IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.25   STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
386	 39.63	0	440148..441386	+	412	42525905	-	TDE0389	-	(R)-2-hydroxyglutaryl-CoA dehydratase, beta subunit, putative
387	 32.56	0	441386..441643	+	85	42525906	-	TDE0390	-	hypothetical protein
388	 36.55	0	441691..441939	-	82	42525907	-	TDE0391	-	hypothetical protein
389	 40.29	0	441936..443114	-	392	42525908	-	TDE0392	-	(R)-2-hydroxyglutaryl-CoA dehydratase, beta subunit, putative
390	 30.25	-1	443272..443919	-	215	42525909	-	TDE0393	-	TetR family transcriptional regulator
391	 32.71	0	444121..445083	+	320	42525910	-	TDE0394	-	oligopeptide/dipeptide ABC transporter, permease protein
392	 38.13	0	445095..445949	+	284	42525911	-	TDE0395	-	oligopeptide/dipeptide ABC transporter, permease protein
393	 37.46	0	445952..446920	+	322	42525912	-	TDE0396	-	oligopeptide/dipeptide ABC transporter, ATP-binding protein
394	 34.46	0	446917..447894	+	325	42525913	-	TDE0397	-	oligopeptide/dipeptide ABC transporter, ATP-binding protein
395	 37.44	0	447913..449496	+	527	42525914	-	TDE0398	-	oligopeptide/dipeptide ABC transporter, periplasmic peptide-binding protein
396	 38.42	0	449568..450905	+	445	42525915	-	TDE0399	-	zinc carboxypeptidase family protein
397	 37.02	0	450973..451893	-	306	42525916	-	TDE0400	-	LysR family transcriptional regulator
398	 35.71	0	451927..454320	-	797	42525917	-	TDE0401	-	adenylate/guanylate cyclase catalytic domain-containing protein
399	 49.52	+2	454338..454442	-	34	42525918	-	TDE0402	-	hypothetical protein
400	 34.97	0	454573..455427	+	284	42525919	-	TDE0403	-	hypothetical protein
401	 25.53	-2	455449..455589	-	46	42525920	-	TDE0404	-	hypothetical protein
402	 42.03	0	455610..457241	+	543	42525921	-	TDE0405	-	major outer sheath protein
403	 37.47	0	457370..458989	+	539	42525922	-	TDE0406	-	hypothetical protein
404	 46.69	+1	459101..460612	-	503	42525923	gltA	TDE0407	-	putative oxidoreductase
405	 45.04	+1	460626..461462	-	278	42525924	-	TDE0408	-	ferredoxin--NADP(+) reductase subunit alpha
406	 37.74	0	461717..462193	+	158	42525925	-	TDE0409	-	hypothetical protein
407	 41.52	0	462193..463059	+	288	42525926	-	TDE0410	-	M48 family peptidase
408	 41.68	0	463071..465155	+	694	42525927	-	TDE0411	-	adenylate/guanylate cyclase catalytic domain-containing protein
409	 31.61	0	465076..466467	+	463	42525928	-	TDE0412	-	hypothetical protein
410	 29.34	-1	466478..467428	+	316	42525929	-	TDE0413	-	putative lipoprotein
411	 32.67	0	467400..467702	+	100	42525930	-	TDE0414	-	hypothetical protein
412	 30.97	-1	467807..469075	+	422	42525931	-	TDE0415	-	putative lipoprotein
413	 34.33	0	469079..469582	+	167	42525932	-	TDE0416	-	bacteriocin-type signal sequence domain-containing protein
414	 35.83	0	469579..469698	-	39	42525933	-	TDE0417	-	hypothetical protein
415	 31.60	0	469742..470953	+	403	42525934	-	TDE0418	-	putative lipoprotein
416	 28.89	-1	471063..472346	+	427	42525935	-	TDE0419	-	hypothetical protein
417	 31.90	0	472358..473545	+	395	42525936	-	TDE0420	-	hypothetical protein
418	 31.08	-1	473556..474842	+	428	42525937	-	TDE0421	-	putative lipoprotein
419	 35.34	0	474826..476670	+	614	42525938	-	TDE0422	-	bacteriocin-type signal sequence domain-containing protein
420	 31.28	-1	476741..478006	+	421	42525939	-	TDE0423	-	hypothetical protein
421	 36.35	0	478010..479833	+	607	42525940	-	TDE0424	-	bacteriocin-type signal sequence domain-containing protein
422	 35.36	0	479840..482005	+	721	42525941	-	TDE0425	-	bacteriocin ABC transporter, ATP-binding/permease, putative
423	 31.08	-1	482021..483172	+	383	42525942	-	TDE0426	-	bacteriocin ABC transporter, bacteriocin-binding protein, putative
424	 28.38	-1	483166..484539	+	457	42525943	-	TDE0427	-	hypothetical protein
425	 28.61	-1	484543..485283	-	246	42525944	-	TDE0428	-	TPR domain-containing protein
426	 34.25	0	485295..485513	-	72	42525945	-	TDE0429	-	hypothetical protein
427	 30.29	-1	485529..486545	-	338	42525946	-	TDE0430	-	TPR domain-containing protein
428	 35.56	0	486560..487684	-	374	42525947	-	TDE0431	-	LysM domain-containing protein
429	 32.49	0	487810..488283	-	157	42525948	-	TDE0432	-	TPR domain-containing protein
430	 32.12	0	488643..488807	-	54	42525949	-	TDE0433	-	hypothetical protein
431	 44.62	+1	489049..489624	+	191	42525950	-	TDE0434	-	rubrerythrin
432	 44.13	+1	489648..491351	-	567	42525951	-	TDE0435	-	ATP-dependent DNA helicase RecQ
433	 43.21	+1	491414..492223	-	269	42525952	recO	TDE0436	-	recombination protein O
434	 39.46	0	492226..493695	-	489	42525953	-	TDE0437	-	HEAT repeat-containing PBS lyase
435	 40.70	0	493762..494901	-	379	42525954	tgt	TDE0438	-	queuine tRNA-ribosyltransferase
436	 35.14	0	495194..495913	-	239	42525955	-	TDE0439	-	hypothetical protein
437	 34.78	0	496091..496366	+	91	42525956	-	TDE0440	-	DNA-binding protein
438	 24.81	-2	496466..496735	-	89	42525957	-	TDE0441	-	hypothetical protein
439	 28.89	-1	496779..497813	-	344	42525958	-	TDE0442	-	hypothetical protein
440	 28.00	-1	498078..499052	+	324	42525959	-	TDE0443	-	hypothetical protein
441	 41.32	0	499106..499831	+	241	42525960	-	TDE0444	-	glutamine amidotransferase class I
442	 39.81	0	499884..501164	+	426	42525961	-	TDE0445	-	amino acid permease
443	 37.40	0	501409..502908	+	499	42525962	-	TDE0446	-	fibronectin type III domain-containing protein
444	 35.92	0	502898..505876	+	992	42525963	-	TDE0447	-	TPR domain-containing protein
445	 39.48	0	505936..506586	+	216	42525964	deoC	TDE0448	-	deoxyribose-phosphate aldolase
446	 37.47	0	506639..507121	-	160	42525965	-	TDE0449	-	ferritin, putative
447	 42.33	0	507186..508619	-	477	42525966	-	TDE0450	-	hypothetical protein
448	 41.44	0	508793..510025	+	410	42525967	arcA	TDE0451	-	arginine deiminase
449	 40.00	0	510039..510233	-	64	42525968	-	TDE0452	-	hypothetical protein
450	 41.44	0	510233..510454	-	73	42525969	-	TDE0453	-	hypothetical protein
451	 40.91	0	510503..511333	-	276	42525970	-	TDE0454	-	hypothetical protein
452	 37.06	0	511332..512537	+	401	42525971	-	TDE0455	-	GHMP family kinase
453	 46.88	+1	512626..513474	-	282	42525972	-	TDE0456	-	pyridoxine biosynthesis protein
454	 34.10	0	513665..514189	+	174	42525973	-	TDE0457	-	hypothetical protein
455	 20.18	-2	514167..514280	+	37	42525974	-	TDE0458	-	hypothetical protein
456	 32.82	0	514522..515301	+	259	42525975	-	TDE0459	-	hypothetical protein
457	 35.28	0	515364..516032	-	222	42525976	-	TDE0460	-	transporter, putative
458	 32.79	0	516003..516185	+	60	42525977	-	TDE0461	-	hypothetical protein
459	 37.90	0	516268..517077	-	269	42525978	-	TDE0462	-	metallo-beta-lactamase family protein
460	 44.87	+1	517323..518024	+	233	42525979	deoD	TDE0463	-	purine nucleoside phosphorylase
461	 42.54	0	518038..518265	-	75	42525980	-	TDE0464	-	NifU domain-containing protein
462	 28.04	-1	518358..518735	-	125	42525981	-	TDE0465	-	PilT domain-containing protein
463	 30.48	-1	518735..518944	-	69	42525982	-	TDE0466	-	hypothetical protein
464	 42.74	0	519096..520520	-	474	42525983	-	TDE0467	-	hypothetical protein
465	 34.63	0	520590..521363	-	257	42525984	-	TDE0468	-	hypothetical protein
466	 37.05	0	521360..524077	-	905	42525985	-	TDE0469	-	hypothetical protein
467	 43.40	+1	524641..526617	+	658	42525986	ftsH	TDE0470	-	cell division protein FtsH
468	 47.24	+1	526747..528378	-	543	42525987	-	TDE0471	-	BNR domain-containing protein
469	 45.21	+1	528516..528734	+	72	42525988	-	TDE0472	-	hypothetical protein
470	 45.24	+1	528761..530860	+	699	42525989	-	TDE0473	-	heavy metal translocating P-type ATPase
471	 37.46	0	530880..531194	+	104	42525990	-	TDE0474	-	hypothetical protein
472	 38.16	0	531243..532298	-	351	42525991	-	TDE0475	-	ABC transporter, ATP-binding protein
473	 44.21	+1	532288..533004	-	238	42525992	-	TDE0476	-	hypothetical protein
474	 37.84	0	533060..534367	-	435	42525993	-	TDE0477	-	hypothetical protein
475	 38.86	0	534423..535073	+	216	42525994	-	TDE0478	-	cyclic nucleotide binding domain-containing protein
476	 39.25	0	535119..536741	-	540	161579584	-	TDE0479	-	hydroxylamine reductase
477	 36.60	0	536829..538265	+	478	42525996	-	TDE0480	-	alpha-L-fucosidase family protein
478	 31.87	0	538287..538628	-	113	42525997	-	TDE0481	-	hypothetical protein
479	 32.88	0	538638..538856	-	72	42525998	-	TDE0482	-	hypothetical protein
480	 31.84	0	538945..539745	+	266	42525999	-	TDE0483	-	hypothetical protein
481	 39.13	0	539786..541906	-	706	42526000	-	TDE0484	-	methyl-accepting chemotaxis protein
482	 35.75	0	542096..542881	-	261	42526001	-	TDE0485	-	hypothetical protein
483	 35.96	0	542902..543702	-	266	42526002	-	TDE0486	-	hypothetical protein
484	 36.51	0	543718..544503	-	261	42526003	-	TDE0487	-	ABC transporter, ATP-binding protein
485	 41.58	0	544600..545205	+	201	42526004	-	TDE0488	-	putative lipoprotein
37.25	MEAN

5.76	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.