IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.25   STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
343	 40.48	0	387163..387987	-	274	42525862	prtB	TDE0346	-	protease PrtB
344	 40.96	0	388140..390329	-	729	42525863	dmcA	TDE0347	-	methyl-accepting chemotaxis protein DmcA
345	 34.67	0	390597..391193	+	198	42525864	-	TDE0348	-	TetR family transcriptional regulator
346	 38.58	0	391233..393710	+	825	42525865	-	TDE0349	-	phosphoenolpyruvate synthase, putative
347	 40.64	0	393712..395079	+	455	42525866	-	TDE0350	-	MATE efflux family protein
348	 50.53	+2	395141..396088	-	315	42525867	ldh	TDE0351	-	L-lactate dehydrogenase
349	 50.77	+2	396347..396799	+	150	42525868	rpiB	TDE0352	-	ribose 5-phosphate isomerase B
350	 44.80	+1	396833..398428	-	531	42525869	-	TDE0353	-	GDSL family lipase/acylhydrolase
351	 49.73	+2	398507..399061	+	184	42525870	-	TDE0354	-	general stress protein 14
352	 43.98	+1	399145..399717	+	190	42525871	-	TDE0355	-	hypothetical protein
353	 41.18	0	399822..400178	-	118	42525872	-	TDE0356	-	hypothetical protein
354	 33.49	0	400198..400833	-	211	42525873	-	TDE0357	-	hypothetical protein
355	 45.04	+1	400883..401728	-	281	42525874	cinI	TDE0358	-	cinnamoyl ester hydrolase
356	 46.70	+1	402283..404190	-	635	42525875	-	TDE0359	-	ABC transporter, ATP-binding/permease protein
357	 43.26	+1	404192..405934	-	580	42525876	-	TDE0360	-	ABC transporter, ATP-binding/permease protein
358	 42.07	0	406129..407502	+	457	42525877	-	TDE0361	-	transporter, putative
359	 39.15	0	407591..409534	-	647	42525878	-	TDE0362	-	Ig-like domain-containing protein
360	 26.80	-1	409626..410069	-	147	42525879	-	TDE0363	-	hypothetical protein
361	 29.29	-1	410139..411695	-	518	42525880	-	TDE0364	-	ABC transporter, ATP-binding protein
362	 33.05	0	411813..412511	-	232	42525881	-	TDE0365	-	hypothetical protein
363	 34.13	0	412512..415631	-	1039	42525882	hsdR-1	TDE0366	-	type I restriction-modification system, R subunit
364	 39.02	0	415624..416643	-	339	42525883	-	TDE0367	-	hypothetical protein
365	 32.92	0	416647..418335	-	562	42525884	-	TDE0368	-	type I restriction-modification system, S subunit, putative
366	 35.63	0	418446..421061	-	871	42525885	hsdM-1	TDE0369	-	type I restriction-modification system, M subunit
367	 37.60	0	421224..422654	+	476	42525886	murD	TDE0370	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
368	 29.38	-1	422827..424674	+	615	42525887	-	TDE0371	-	hypothetical protein
369	 29.39	-1	424722..426266	-	514	42525888	-	TDE0372	-	ABC transporter, ATP-binding/permease protein
370	 29.83	-1	426241..427812	-	523	42525889	-	TDE0373	-	ABC transporter, ATP-binding/permease protein
371	 35.98	0	428004..429290	-	428	42525890	-	TDE0374	-	glycosyl transferase, group 1 family protein
372	 31.86	0	429287..430237	-	316	42525891	-	TDE0375	-	ABC transporter, ATP-binding protein
373	 32.84	0	430260..431879	-	539	42525892	-	TDE0376	-	ABC transporter, permease protein, putative
374	 26.88	-1	431975..432067	-	30	42525893	-	TDE0377	-	hypothetical protein
375	 37.73	0	432304..432576	+	90	42525894	-	TDE0378	-	hypothetical protein
376	 33.81	0	432598..433437	+	279	42525895	-	TDE0379	-	hypothetical protein
377	 31.70	0	433491..434042	+	183	42525896	-	TDE0380	-	hypothetical protein
378	 31.56	0	434072..434521	+	149	42525897	-	TDE0381	-	hypothetical protein
379	 28.64	-1	434533..434745	+	70	42525898	-	TDE0382	-	hypothetical protein
380	 27.81	-1	434749..435219	+	156	42525899	-	TDE0383	-	hypothetical protein
381	 28.67	-1	435188..435745	+	185	42525900	-	TDE0384	-	hypothetical protein
382	 25.49	-2	435779..437347	+	522	42525901	-	TDE0385	-	ABC transporter, ATP-binding/permease protein
383	 41.99	0	437395..438411	-	338	42525902	-	TDE0386	-	ABC transporter, periplasmic substrate-binding protein
384	 42.67	0	438567..439316	+	249	42525903	hgdC	TDE0387	-	(R)-hydroxyglutaryl-CoA dehydratase activator
385	 31.08	-1	439313..440110	+	265	42525904	-	TDE0388	-	hypothetical protein
386	 39.63	0	440148..441386	+	412	42525905	-	TDE0389	-	(R)-2-hydroxyglutaryl-CoA dehydratase, beta subunit, putative
387	 32.56	0	441386..441643	+	85	42525906	-	TDE0390	-	hypothetical protein
388	 36.55	0	441691..441939	-	82	42525907	-	TDE0391	-	hypothetical protein
389	 40.29	0	441936..443114	-	392	42525908	-	TDE0392	-	(R)-2-hydroxyglutaryl-CoA dehydratase, beta subunit, putative
390	 30.25	-1	443272..443919	-	215	42525909	-	TDE0393	-	TetR family transcriptional regulator
391	 32.71	0	444121..445083	+	320	42525910	-	TDE0394	-	oligopeptide/dipeptide ABC transporter, permease protein
392	 38.13	0	445095..445949	+	284	42525911	-	TDE0395	-	oligopeptide/dipeptide ABC transporter, permease protein
393	 37.46	0	445952..446920	+	322	42525912	-	TDE0396	-	oligopeptide/dipeptide ABC transporter, ATP-binding protein
394	 34.46	0	446917..447894	+	325	42525913	-	TDE0397	-	oligopeptide/dipeptide ABC transporter, ATP-binding protein
395	 37.44	0	447913..449496	+	527	42525914	-	TDE0398	-	oligopeptide/dipeptide ABC transporter, periplasmic peptide-binding protein
396	 38.42	0	449568..450905	+	445	42525915	-	TDE0399	-	zinc carboxypeptidase family protein
397	 37.02	0	450973..451893	-	306	42525916	-	TDE0400	-	LysR family transcriptional regulator
398	 35.71	0	451927..454320	-	797	42525917	-	TDE0401	-	adenylate/guanylate cyclase catalytic domain-containing protein
399	 49.52	+2	454338..454442	-	34	42525918	-	TDE0402	-	hypothetical protein
400	 34.97	0	454573..455427	+	284	42525919	-	TDE0403	-	hypothetical protein
401	 25.53	-2	455449..455589	-	46	42525920	-	TDE0404	-	hypothetical protein
402	 42.03	0	455610..457241	+	543	42525921	-	TDE0405	-	major outer sheath protein
403	 37.47	0	457370..458989	+	539	42525922	-	TDE0406	-	hypothetical protein
404	 46.69	+1	459101..460612	-	503	42525923	gltA	TDE0407	-	putative oxidoreductase
405	 45.04	+1	460626..461462	-	278	42525924	-	TDE0408	-	ferredoxin--NADP(+) reductase subunit alpha
406	 37.74	0	461717..462193	+	158	42525925	-	TDE0409	-	hypothetical protein
407	 41.52	0	462193..463059	+	288	42525926	-	TDE0410	-	M48 family peptidase
408	 41.68	0	463071..465155	+	694	42525927	-	TDE0411	-	adenylate/guanylate cyclase catalytic domain-containing protein
409	 31.61	0	465076..466467	+	463	42525928	-	TDE0412	-	hypothetical protein
410	 29.34	-1	466478..467428	+	316	42525929	-	TDE0413	-	putative lipoprotein
411	 32.67	0	467400..467702	+	100	42525930	-	TDE0414	-	hypothetical protein
412	 30.97	-1	467807..469075	+	422	42525931	-	TDE0415	-	putative lipoprotein
413	 34.33	0	469079..469582	+	167	42525932	-	TDE0416	-	bacteriocin-type signal sequence domain-containing protein
414	 35.83	0	469579..469698	-	39	42525933	-	TDE0417	-	hypothetical protein
415	 31.60	0	469742..470953	+	403	42525934	-	TDE0418	-	putative lipoprotein
416	 28.89	-1	471063..472346	+	427	42525935	-	TDE0419	-	hypothetical protein
417	 31.90	0	472358..473545	+	395	42525936	-	TDE0420	-	hypothetical protein
418	 31.08	-1	473556..474842	+	428	42525937	-	TDE0421	-	putative lipoprotein
419	 35.34	0	474826..476670	+	614	42525938	-	TDE0422	-	bacteriocin-type signal sequence domain-containing protein
420	 31.28	-1	476741..478006	+	421	42525939	-	TDE0423	-	hypothetical protein
421	 36.35	0	478010..479833	+	607	42525940	-	TDE0424	-	bacteriocin-type signal sequence domain-containing protein
422	 35.36	0	479840..482005	+	721	42525941	-	TDE0425	-	bacteriocin ABC transporter, ATP-binding/permease, putative
423	 31.08	-1	482021..483172	+	383	42525942	-	TDE0426	-	bacteriocin ABC transporter, bacteriocin-binding protein, putative
424	 28.38	-1	483166..484539	+	457	42525943	-	TDE0427	-	hypothetical protein
425	 28.61	-1	484543..485283	-	246	42525944	-	TDE0428	-	TPR domain-containing protein
426	 34.25	0	485295..485513	-	72	42525945	-	TDE0429	-	hypothetical protein
427	 30.29	-1	485529..486545	-	338	42525946	-	TDE0430	-	TPR domain-containing protein
428	 35.56	0	486560..487684	-	374	42525947	-	TDE0431	-	LysM domain-containing protein
429	 32.49	0	487810..488283	-	157	42525948	-	TDE0432	-	TPR domain-containing protein
430	 32.12	0	488643..488807	-	54	42525949	-	TDE0433	-	hypothetical protein
431	 44.62	+1	489049..489624	+	191	42525950	-	TDE0434	-	rubrerythrin
432	 44.13	+1	489648..491351	-	567	42525951	-	TDE0435	-	ATP-dependent DNA helicase RecQ
433	 43.21	+1	491414..492223	-	269	42525952	recO	TDE0436	-	recombination protein O
434	 39.46	0	492226..493695	-	489	42525953	-	TDE0437	-	HEAT repeat-containing PBS lyase
435	 40.70	0	493762..494901	-	379	42525954	tgt	TDE0438	-	queuine tRNA-ribosyltransferase
436	 35.14	0	495194..495913	-	239	42525955	-	TDE0439	-	hypothetical protein
437	 34.78	0	496091..496366	+	91	42525956	-	TDE0440	-	DNA-binding protein
438	 24.81	-2	496466..496735	-	89	42525957	-	TDE0441	-	hypothetical protein
439	 28.89	-1	496779..497813	-	344	42525958	-	TDE0442	-	hypothetical protein
440	 28.00	-1	498078..499052	+	324	42525959	-	TDE0443	-	hypothetical protein
441	 41.32	0	499106..499831	+	241	42525960	-	TDE0444	-	glutamine amidotransferase class I
442	 39.81	0	499884..501164	+	426	42525961	-	TDE0445	-	amino acid permease
37.25	MEAN

5.76	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.