IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.25   STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
280	 45.67	+1	312211..312915	-	234	42525799	-	TDE0283	-	transporter, putative
281	 41.79	0	312916..313518	-	200	42525800	-	TDE0284	-	hypothetical protein
282	 46.39	+1	313762..315813	+	683	42525801	fusA-1	TDE0285	-	elongation factor G
283	 31.60	0	315858..317468	-	536	42525802	-	TDE0286	-	ABC transporter, ATP-binding protein
284	 32.03	0	317465..319150	-	561	42525803	-	TDE0287	-	ABC transporter, ATP-binding protein, putative
285	 31.92	0	319214..320134	-	306	42525804	-	TDE0288	-	hypothetical protein
286	 29.34	-1	320161..320736	-	191	42525805	-	TDE0289	-	hypothetical protein
287	 21.88	-2	320789..320884	-	31	42525806	-	TDE0290	-	hypothetical protein
288	 31.46	-1	320884..321150	-	88	42525807	-	TDE0291	-	hypothetical protein
289	 38.33	0	321265..322104	-	279	42525808	-	TDE0292	-	hypothetical protein
290	 38.53	0	322108..323511	-	467	42525809	-	TDE0293	-	MATE efflux family protein
291	 38.08	0	323563..324300	-	245	42525810	-	TDE0294	-	TrkA domain-containing protein
292	 45.10	+1	324310..326757	-	815	42525811	gyrA	TDE0295	-	DNA gyrase, A subunit
293	 43.44	+1	326932..327831	-	299	42525812	-	TDE0296	-	formiminotransferase, putative
294	 22.40	-2	327886..328068	-	60	42525813	-	TDE0297	-	hypothetical protein
295	 31.24	-1	328103..330061	+	652	42525814	-	TDE0298	-	hypothetical protein
296	 36.67	0	330220..330639	+	139	42525815	mutT	TDE0299	-	mutator mutT protein
297	 42.00	0	330983..332413	+	476	42525816	-	TDE0300	-	leucyl aminopeptidase
298	 30.22	-1	332487..333290	+	267	42525817	-	TDE0301	-	tetracenomycin polyketide synthesis O-methyltransferase TcmP, putative
299	 33.33	0	333363..333641	+	92	42525818	-	TDE0302	-	hypothetical protein
300	 30.14	-1	333638..333919	+	93	42525819	-	TDE0303	-	hypothetical protein
301	 41.50	0	334023..335552	+	509	42525820	-	TDE0304	-	hypothetical protein
302	 44.26	+1	335735..336841	-	368	42525821	ychF	TDE0305	-	translation-associated GTPase
303	 40.11	0	336880..338709	-	609	42525822	sppA	TDE0306	-	signal peptide peptidase SppA
304	 29.91	-1	338795..339700	+	301	42525823	-	TDE0307	-	hypothetical protein
305	 35.33	0	339727..340776	+	349	42525824	-	TDE0308	-	hypothetical protein
306	 26.29	-1	340806..341756	+	316	42525825	-	TDE0309	-	putative lipoprotein
307	 29.83	-1	341760..342872	+	370	42525826	-	TDE0310	-	hypothetical protein
308	 40.70	0	342956..343756	+	266	42525827	thyX	TDE0311	-	FAD-dependent thymidylate synthase
309	 31.88	0	343775..345499	+	574	42525828	-	TDE0312	-	TrkH family potassium uptake protein
310	 37.66	0	345514..346206	+	230	42525829	-	TDE0313	-	TrkA domain-containing protein
311	 30.15	-1	346217..346969	+	250	42525830	-	TDE0314	-	hypothetical protein
312	 36.08	0	347078..348862	+	594	42525831	-	TDE0315	-	ABC transporter ATP-binding protein/peptidase
313	 33.90	0	348960..350549	-	529	42525832	-	TDE0316	-	ABC transporter, ATP-binding/permease protein
314	 41.73	0	350796..351176	+	126	42525833	-	TDE0317	-	hypothetical protein
315	 31.75	0	351222..351536	+	104	42525834	-	TDE0318	-	hypothetical protein
316	 42.26	0	351600..352607	+	335	42525835	-	TDE0319	-	hypothetical protein
317	 34.33	0	352570..353868	-	432	42525836	-	TDE0320	-	CBS domain-containing protein
318	 34.24	0	353865..355184	-	439	42525837	-	TDE0321	-	CBS domain-containing protein
319	 37.33	0	355196..355495	-	99	42525838	-	TDE0322	-	P-II family regulatory protein
320	 37.76	0	355840..357285	-	481	42525839	-	TDE0323	-	hypothetical protein
321	 33.66	0	357584..358204	+	206	42525840	-	TDE0324	-	hypothetical protein
322	 30.85	-1	358191..358793	+	200	42525841	-	TDE0325	-	hypothetical protein
323	 39.77	0	358838..360718	-	626	42525842	recQ	TDE0326	-	ATP-dependent DNA helicase RecQ
324	 31.35	-1	361021..365208	+	1395	42525843	-	TDE0327	-	CRISPR-associated Cas5e family protein
325	 32.76	0	365205..366077	+	290	42525844	cas1	TDE0328	-	CRISPR-associated Cas1 family protein
326	 31.05	-1	366082..366387	+	101	42525845	-	TDE0329	-	CRISPR-associated Cas2 family protein
327	 25.78	-1	366384..367058	+	224	42525846	-	TDE0330	-	CRISPR-associated Csn2 family protein
328	 30.39	-1	370932..371033	-	33	42525847	-	TDE0331	-	hypothetical protein
329	 33.33	0	371080..371706	+	208	42525848	-	TDE0332	-	TetR family transcriptional regulator
330	 37.46	0	371788..373143	+	451	42525849	-	TDE0333	-	MATE efflux family protein
331	 32.40	0	373386..374138	-	250	42525850	-	TDE0334	-	hypothetical protein
332	 39.30	0	374210..375265	-	351	42525851	nrdF	TDE0335	-	ribonucleotide-diphosphate reductase subunit beta
333	 34.32	0	375283..376401	-	372	42525852	-	TDE0336	-	hypothetical protein
334	 36.53	0	376385..377197	-	270	42525853	nagB	TDE0337	-	glucosamine-6-phosphate deaminase
335	 35.47	0	377457..377924	+	155	42525854	-	TDE0338	-	methyl-accepting chemotaxis protein-like protein
336	 44.50	+1	378011..378628	+	205	42525855	-	TDE0339	-	TetR family transcriptional regulator
337	 39.41	0	378779..379666	+	295	42525856	-	TDE0340	-	fructose-1,6-bisphosphate aldolase
338	 42.24	0	379679..382216	-	845	42525857	nrdA	TDE0341	-	ribonucleotide-diphosphate reductase subunit alpha
339	 37.86	0	382218..383831	-	537	42525858	mviN	TDE0342	-	integral membrane protein MviN
340	 37.18	0	384337..385455	-	372	42525859	-	TDE0343	-	alpha/beta fold family hydrolase
341	 38.74	0	385457..385678	-	73	42525860	-	TDE0344	-	AbrB family transcriptional regulator
342	 41.20	0	385834..387066	-	410	42525861	dmcB	TDE0345	-	methyl-accepting chemotaxis protein DmcB
343	 40.48	0	387163..387987	-	274	42525862	prtB	TDE0346	-	protease PrtB
344	 40.96	0	388140..390329	-	729	42525863	dmcA	TDE0347	-	methyl-accepting chemotaxis protein DmcA
345	 34.67	0	390597..391193	+	198	42525864	-	TDE0348	-	TetR family transcriptional regulator
346	 38.58	0	391233..393710	+	825	42525865	-	TDE0349	-	phosphoenolpyruvate synthase, putative
347	 40.64	0	393712..395079	+	455	42525866	-	TDE0350	-	MATE efflux family protein
348	 50.53	+2	395141..396088	-	315	42525867	ldh	TDE0351	-	L-lactate dehydrogenase
349	 50.77	+2	396347..396799	+	150	42525868	rpiB	TDE0352	-	ribose 5-phosphate isomerase B
350	 44.80	+1	396833..398428	-	531	42525869	-	TDE0353	-	GDSL family lipase/acylhydrolase
351	 49.73	+2	398507..399061	+	184	42525870	-	TDE0354	-	general stress protein 14
352	 43.98	+1	399145..399717	+	190	42525871	-	TDE0355	-	hypothetical protein
353	 41.18	0	399822..400178	-	118	42525872	-	TDE0356	-	hypothetical protein
354	 33.49	0	400198..400833	-	211	42525873	-	TDE0357	-	hypothetical protein
355	 45.04	+1	400883..401728	-	281	42525874	cinI	TDE0358	-	cinnamoyl ester hydrolase
356	 46.70	+1	402283..404190	-	635	42525875	-	TDE0359	-	ABC transporter, ATP-binding/permease protein
357	 43.26	+1	404192..405934	-	580	42525876	-	TDE0360	-	ABC transporter, ATP-binding/permease protein
358	 42.07	0	406129..407502	+	457	42525877	-	TDE0361	-	transporter, putative
359	 39.15	0	407591..409534	-	647	42525878	-	TDE0362	-	Ig-like domain-containing protein
360	 26.80	-1	409626..410069	-	147	42525879	-	TDE0363	-	hypothetical protein
361	 29.29	-1	410139..411695	-	518	42525880	-	TDE0364	-	ABC transporter, ATP-binding protein
362	 33.05	0	411813..412511	-	232	42525881	-	TDE0365	-	hypothetical protein
363	 34.13	0	412512..415631	-	1039	42525882	hsdR-1	TDE0366	-	type I restriction-modification system, R subunit
364	 39.02	0	415624..416643	-	339	42525883	-	TDE0367	-	hypothetical protein
365	 32.92	0	416647..418335	-	562	42525884	-	TDE0368	-	type I restriction-modification system, S subunit, putative
366	 35.63	0	418446..421061	-	871	42525885	hsdM-1	TDE0369	-	type I restriction-modification system, M subunit
367	 37.60	0	421224..422654	+	476	42525886	murD	TDE0370	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
368	 29.38	-1	422827..424674	+	615	42525887	-	TDE0371	-	hypothetical protein
369	 29.39	-1	424722..426266	-	514	42525888	-	TDE0372	-	ABC transporter, ATP-binding/permease protein
370	 29.83	-1	426241..427812	-	523	42525889	-	TDE0373	-	ABC transporter, ATP-binding/permease protein
371	 35.98	0	428004..429290	-	428	42525890	-	TDE0374	-	glycosyl transferase, group 1 family protein
372	 31.86	0	429287..430237	-	316	42525891	-	TDE0375	-	ABC transporter, ATP-binding protein
373	 32.84	0	430260..431879	-	539	42525892	-	TDE0376	-	ABC transporter, permease protein, putative
374	 26.88	-1	431975..432067	-	30	42525893	-	TDE0377	-	hypothetical protein
375	 37.73	0	432304..432576	+	90	42525894	-	TDE0378	-	hypothetical protein
376	 33.81	0	432598..433437	+	279	42525895	-	TDE0379	-	hypothetical protein
377	 31.70	0	433491..434042	+	183	42525896	-	TDE0380	-	hypothetical protein
378	 31.56	0	434072..434521	+	149	42525897	-	TDE0381	-	hypothetical protein
379	 28.64	-1	434533..434745	+	70	42525898	-	TDE0382	-	hypothetical protein
37.25	MEAN

5.76	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.