IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.25   STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
243	 40.93	0	277579..279303	-	574	42525762	-	TDE0244	-	ABC transporter, ATP-binding/permease protein
244	 40.95	0	279315..281033	-	572	42525763	-	TDE0245	-	ABC transporter, ATP-binding/permease protein
245	 36.49	0	281186..281755	-	189	42525764	-	TDE0246	-	TetR family transcriptional regulator
246	 43.36	+1	282208..282576	+	122	42525765	-	TDE0248	-	hypothetical protein
247	 39.54	0	282679..283242	+	187	42525766	-	TDE0249	-	flavoredoxin, putative
248	 42.23	0	283400..284725	-	441	42525767	-	TDE0250	-	sodium-dependent transporter, putative
249	 40.58	0	284807..286186	-	459	42525768	tnaA	TDE0251	-	tryptophanase
250	 38.22	0	286403..287221	+	272	42525769	-	TDE0252	-	hypothetical protein
251	 39.09	0	287292..288785	+	497	42525770	-	TDE0253	-	hypothetical protein
252	 30.22	-1	288794..289372	+	192	42525771	-	TDE0254	-	hypothetical protein
253	 46.81	+1	289408..290832	-	474	42525772	-	TDE0255	-	ABC transporter, ATP-binding protein
254	 43.35	+1	290832..291530	-	232	42525773	-	TDE0256	-	hypothetical protein
255	 39.64	0	291586..292188	-	200	42525774	-	TDE0257	-	hypothetical protein
256	 38.65	0	292222..292974	-	250	42525775	-	TDE0258	-	UbiE/COQ5 family methlytransferase
257	 37.75	0	293397..293849	+	150	42525776	-	TDE0259	-	MarR family transcriptional regulator
258	 37.17	0	293874..294785	+	303	42525777	-	TDE0260	-	iron-sulfur cluster-binding protein
259	 36.82	0	294782..295240	+	152	42525778	-	TDE0261	-	flavodoxin
260	 27.56	-1	295317..296390	-	357	42525779	-	TDE0262	-	hypothetical protein
261	 32.23	0	296490..297032	-	180	42525780	-	TDE0263	-	spermidine N1-acetyltransferase, putative
262	 31.09	-1	297111..297377	-	88	42525781	-	TDE0264	-	CopG family protein
263	 31.06	-1	297857..298648	-	263	42525782	-	TDE0266	-	hypothetical protein
264	 28.57	-1	298653..299198	-	181	42525783	-	TDE0267	-	HAM1 protein
265	 26.11	-1	299309..300139	-	276	42525784	-	TDE0268	-	hypothetical protein
266	 32.52	0	300286..300777	-	163	42525785	-	TDE0269	-	hypothetical protein
267	 28.27	-1	300935..301960	-	341	42525786	-	TDE0270	-	hypothetical protein
268	 34.03	0	302116..302259	+	47	42525787	-	TDE0271	-	hypothetical protein
269	 35.45	0	302346..302960	-	204	42525788	-	TDE0272	-	hypothetical protein
270	 43.63	+1	302957..304723	-	588	42525789	-	TDE0273	-	ABC transporter, ATP-binding/permease protein
271	 45.71	+1	304720..306513	-	597	42525790	-	TDE0274	-	ABC transporter, ATP-binding/permease protein
272	 31.08	-1	306773..307438	+	221	42525791	-	TDE0275	-	CAAX amino terminal protease family protein
273	 26.79	-1	307493..308119	-	208	42525792	-	TDE0276	-	HD domain-containing protein
274	 25.25	-2	308199..308594	-	131	42525793	-	TDE0277	-	hypothetical protein
275	 31.56	0	308591..308872	-	93	42525794	-	TDE0278	-	hypothetical protein
276	 31.08	-1	308898..309872	-	324	42525795	-	TDE0279	-	hypothetical protein
277	 31.84	0	309985..310386	-	133	42525796	-	TDE0280	-	PilT domain-containing protein
278	 35.35	0	310383..310580	-	65	42525797	-	TDE0281	-	hypothetical protein
279	 41.16	0	310745..312214	-	489	42525798	-	TDE0282	-	ABC transporter, ATP-binding protein
280	 45.67	+1	312211..312915	-	234	42525799	-	TDE0283	-	transporter, putative
281	 41.79	0	312916..313518	-	200	42525800	-	TDE0284	-	hypothetical protein
282	 46.39	+1	313762..315813	+	683	42525801	fusA-1	TDE0285	-	elongation factor G
283	 31.60	0	315858..317468	-	536	42525802	-	TDE0286	-	ABC transporter, ATP-binding protein
284	 32.03	0	317465..319150	-	561	42525803	-	TDE0287	-	ABC transporter, ATP-binding protein, putative
285	 31.92	0	319214..320134	-	306	42525804	-	TDE0288	-	hypothetical protein
286	 29.34	-1	320161..320736	-	191	42525805	-	TDE0289	-	hypothetical protein
287	 21.88	-2	320789..320884	-	31	42525806	-	TDE0290	-	hypothetical protein
288	 31.46	-1	320884..321150	-	88	42525807	-	TDE0291	-	hypothetical protein
289	 38.33	0	321265..322104	-	279	42525808	-	TDE0292	-	hypothetical protein
290	 38.53	0	322108..323511	-	467	42525809	-	TDE0293	-	MATE efflux family protein
291	 38.08	0	323563..324300	-	245	42525810	-	TDE0294	-	TrkA domain-containing protein
292	 45.10	+1	324310..326757	-	815	42525811	gyrA	TDE0295	-	DNA gyrase, A subunit
293	 43.44	+1	326932..327831	-	299	42525812	-	TDE0296	-	formiminotransferase, putative
294	 22.40	-2	327886..328068	-	60	42525813	-	TDE0297	-	hypothetical protein
295	 31.24	-1	328103..330061	+	652	42525814	-	TDE0298	-	hypothetical protein
296	 36.67	0	330220..330639	+	139	42525815	mutT	TDE0299	-	mutator mutT protein
297	 42.00	0	330983..332413	+	476	42525816	-	TDE0300	-	leucyl aminopeptidase
298	 30.22	-1	332487..333290	+	267	42525817	-	TDE0301	-	tetracenomycin polyketide synthesis O-methyltransferase TcmP, putative
299	 33.33	0	333363..333641	+	92	42525818	-	TDE0302	-	hypothetical protein
300	 30.14	-1	333638..333919	+	93	42525819	-	TDE0303	-	hypothetical protein
301	 41.50	0	334023..335552	+	509	42525820	-	TDE0304	-	hypothetical protein
302	 44.26	+1	335735..336841	-	368	42525821	ychF	TDE0305	-	translation-associated GTPase
303	 40.11	0	336880..338709	-	609	42525822	sppA	TDE0306	-	signal peptide peptidase SppA
304	 29.91	-1	338795..339700	+	301	42525823	-	TDE0307	-	hypothetical protein
305	 35.33	0	339727..340776	+	349	42525824	-	TDE0308	-	hypothetical protein
306	 26.29	-1	340806..341756	+	316	42525825	-	TDE0309	-	putative lipoprotein
307	 29.83	-1	341760..342872	+	370	42525826	-	TDE0310	-	hypothetical protein
308	 40.70	0	342956..343756	+	266	42525827	thyX	TDE0311	-	FAD-dependent thymidylate synthase
309	 31.88	0	343775..345499	+	574	42525828	-	TDE0312	-	TrkH family potassium uptake protein
310	 37.66	0	345514..346206	+	230	42525829	-	TDE0313	-	TrkA domain-containing protein
311	 30.15	-1	346217..346969	+	250	42525830	-	TDE0314	-	hypothetical protein
312	 36.08	0	347078..348862	+	594	42525831	-	TDE0315	-	ABC transporter ATP-binding protein/peptidase
313	 33.90	0	348960..350549	-	529	42525832	-	TDE0316	-	ABC transporter, ATP-binding/permease protein
314	 41.73	0	350796..351176	+	126	42525833	-	TDE0317	-	hypothetical protein
315	 31.75	0	351222..351536	+	104	42525834	-	TDE0318	-	hypothetical protein
316	 42.26	0	351600..352607	+	335	42525835	-	TDE0319	-	hypothetical protein
317	 34.33	0	352570..353868	-	432	42525836	-	TDE0320	-	CBS domain-containing protein
318	 34.24	0	353865..355184	-	439	42525837	-	TDE0321	-	CBS domain-containing protein
319	 37.33	0	355196..355495	-	99	42525838	-	TDE0322	-	P-II family regulatory protein
320	 37.76	0	355840..357285	-	481	42525839	-	TDE0323	-	hypothetical protein
321	 33.66	0	357584..358204	+	206	42525840	-	TDE0324	-	hypothetical protein
322	 30.85	-1	358191..358793	+	200	42525841	-	TDE0325	-	hypothetical protein
323	 39.77	0	358838..360718	-	626	42525842	recQ	TDE0326	-	ATP-dependent DNA helicase RecQ
324	 31.35	-1	361021..365208	+	1395	42525843	-	TDE0327	-	CRISPR-associated Cas5e family protein
325	 32.76	0	365205..366077	+	290	42525844	cas1	TDE0328	-	CRISPR-associated Cas1 family protein
326	 31.05	-1	366082..366387	+	101	42525845	-	TDE0329	-	CRISPR-associated Cas2 family protein
327	 25.78	-1	366384..367058	+	224	42525846	-	TDE0330	-	CRISPR-associated Csn2 family protein
328	 30.39	-1	370932..371033	-	33	42525847	-	TDE0331	-	hypothetical protein
329	 33.33	0	371080..371706	+	208	42525848	-	TDE0332	-	TetR family transcriptional regulator
330	 37.46	0	371788..373143	+	451	42525849	-	TDE0333	-	MATE efflux family protein
331	 32.40	0	373386..374138	-	250	42525850	-	TDE0334	-	hypothetical protein
332	 39.30	0	374210..375265	-	351	42525851	nrdF	TDE0335	-	ribonucleotide-diphosphate reductase subunit beta
333	 34.32	0	375283..376401	-	372	42525852	-	TDE0336	-	hypothetical protein
334	 36.53	0	376385..377197	-	270	42525853	nagB	TDE0337	-	glucosamine-6-phosphate deaminase
335	 35.47	0	377457..377924	+	155	42525854	-	TDE0338	-	methyl-accepting chemotaxis protein-like protein
336	 44.50	+1	378011..378628	+	205	42525855	-	TDE0339	-	TetR family transcriptional regulator
337	 39.41	0	378779..379666	+	295	42525856	-	TDE0340	-	fructose-1,6-bisphosphate aldolase
338	 42.24	0	379679..382216	-	845	42525857	nrdA	TDE0341	-	ribonucleotide-diphosphate reductase subunit alpha
339	 37.86	0	382218..383831	-	537	42525858	mviN	TDE0342	-	integral membrane protein MviN
340	 37.18	0	384337..385455	-	372	42525859	-	TDE0343	-	alpha/beta fold family hydrolase
341	 38.74	0	385457..385678	-	73	42525860	-	TDE0344	-	AbrB family transcriptional regulator
342	 41.20	0	385834..387066	-	410	42525861	dmcB	TDE0345	-	methyl-accepting chemotaxis protein DmcB
37.25	MEAN

5.76	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.