IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.25   STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2581	 34.48	0	2634098..2638615	+	1505	42528100	-	TDE2600	-	hypothetical protein
2582	 35.08	0	2638630..2641086	+	818	42528101	-	TDE2601	-	surface antigen, putative
2583	 37.31	0	2641096..2641623	+	175	42528102	-	TDE2602	-	outer membrane protein, putative
2584	 43.31	+1	2641616..2644291	+	891	42528103	mutS	TDE2603	-	DNA mismatch repair protein
2585	 27.27	-1	2644314..2645864	-	516	42528104	-	TDE2604	-	hypothetical protein
2586	 37.02	0	2645958..2646500	+	180	42528105	-	TDE2605	-	phosphoglycerate mutase family protein
2587	 47.06	+1	2646587..2648611	+	674	42528106	hutU	TDE2606	-	urocanate hydratase
2588	 38.12	0	2648726..2649394	+	222	42528107	-	TDE2607	-	hypothetical protein
2589	 38.61	0	2649415..2650533	+	372	42528108	-	TDE2608	-	hypothetical protein
2590	 40.17	0	2650561..2651964	+	467	42528109	-	TDE2609	-	putative tRNA modifying protein
2591	 33.33	0	2651944..2652060	-	38	42528110	-	TDE2610	-	hypothetical protein
2592	 38.69	0	2652120..2654339	+	739	42528111	-	TDE2611	-	hypothetical protein
2593	 35.81	0	2654347..2655519	+	390	42528112	-	TDE2612	-	hypothetical protein
2594	 35.56	0	2655512..2655916	+	134	42528113	-	TDE2613	-	hypothetical protein
2595	 37.46	0	2656108..2657223	-	371	42528114	-	TDE2614	-	ApbE family protein
2596	 37.93	0	2657236..2657757	-	173	42528115	lspA	TDE2615	-	signal peptidase II
2597	 40.00	0	2657770..2658429	-	219	42528116	-	TDE2616	-	cyclic nucleotide-binding protein
2598	 41.82	0	2658433..2659434	-	333	42528117	-	TDE2617	-	cyclic nucleotide-binding protein
2599	 45.21	+1	2659532..2660407	+	291	42528118	-	TDE2618	-	phosphotransferase domain-containing protein
2600	 38.11	0	2660420..2661634	+	404	42528119	-	TDE2619	-	RNA methyltransferase
2601	 35.48	0	2661678..2662097	+	139	42528120	-	TDE2620	-	hypothetical protein
2602	 36.05	0	2662111..2662257	+	48	42528121	-	TDE2621	-	hypothetical protein
2603	 48.27	+1	2662268..2663680	-	470	42528122	-	TDE2622	-	ABC transporter, ATP-binding protein
2604	 48.72	+1	2663674..2664414	-	246	42528123	-	TDE2623	-	hypothetical protein
2605	 43.76	+1	2664411..2664995	-	194	42528124	-	TDE2624	-	hypothetical protein
2606	 48.97	+2	2665015..2666754	-	579	42528125	-	TDE2625	-	ABC transporter, ATP-binding/permease protein
2607	 48.34	+1	2666747..2668492	-	581	42528126	-	TDE2626	-	ABC transporter, ATP-binding/permease protein
2608	 44.99	+1	2668622..2669230	-	202	42528127	-	TDE2627	-	TetR family transcriptional regulator
2609	 41.03	0	2669208..2669402	+	64	42528128	-	TDE2628	-	hypothetical protein
2610	 47.23	+1	2669469..2671022	+	517	42528129	-	TDE2629	-	peptide ABC transporter, periplasmic peptide-binding protein, putative
2611	 44.34	+1	2671019..2671972	+	317	42528130	-	TDE2630	-	peptide ABC transporter, permease protein, putative
2612	 48.12	+1	2671969..2672793	+	274	42528131	-	TDE2631	-	peptide ABC transporter, permease protein, putative
2613	 49.32	+2	2672790..2674484	+	564	42528132	-	TDE2632	-	peptide ABC transporter, ATP-binding protein, putative
2614	 37.12	0	2674499..2674762	+	87	42528133	-	TDE2633	-	hypothetical protein
2615	 40.89	0	2674765..2675571	+	268	42528134	-	TDE2634	-	hypothetical protein
2616	 34.33	0	2675593..2676093	+	166	42528135	-	TDE2635	-	acetyltransferase
2617	 44.50	+1	2676210..2676809	+	199	42528136	-	TDE2636	-	hypothetical protein
2618	 43.05	+1	2676882..2677406	-	174	42528137	-	TDE2637	-	hypothetical protein
2619	 36.84	0	2677633..2678259	+	208	42528138	-	TDE2638	-	hypothetical protein
2620	 42.49	0	2678260..2680149	+	629	42528139	pepF	TDE2639	-	oligoendopeptidase F
2621	 42.59	0	2680174..2681091	+	305	42528140	-	TDE2640	-	hypothetical protein
2622	 34.35	0	2681142..2682128	+	328	42528141	-	TDE2641	-	Fic family protein
2623	 28.47	-1	2682201..2682344	-	47	42528142	-	TDE2642	-	hypothetical protein
2624	 44.42	+1	2682325..2683794	+	489	42528143	-	TDE2643	-	oxidoreductase, FAD-dependent
2625	 43.87	+1	2683791..2685119	+	442	42528144	-	TDE2644	-	pyridine nucleotide-disulphide oxidoreductase family protein
2626	 40.97	0	2685112..2685504	+	130	42528145	-	TDE2645	-	hypothetical protein
2627	 39.47	0	2685488..2686090	+	200	42528146	-	TDE2646	-	ABC transporter, ATP-binding protein, putative
2628	 38.45	0	2686092..2687087	-	331	42528147	-	TDE2647	-	lipoyltransferase and lipoate-protein ligase family protein
2629	 26.15	-1	2687172..2687867	-	231	42528148	-	TDE2648	-	hypothetical protein
2630	 32.18	0	2687869..2688738	-	289	42528149	-	TDE2649	-	ABC transporter, ATP-binding protein
2631	 35.25	0	2688756..2689121	-	121	42528150	-	TDE2650	-	transcriptional regulator, putative
2632	 26.87	-1	2689289..2690278	+	329	42528151	-	TDE2651	-	ABC transporter, ATP-binding protein
2633	 25.79	-1	2690275..2691030	+	251	42528152	-	TDE2652	-	hypothetical protein
2634	 26.23	-1	2691031..2691804	+	257	42528153	-	TDE2653	-	hypothetical protein
2635	 36.63	0	2691815..2693059	+	414	42528154	-	TDE2654	-	macrolide efflux protein, putative
2636	 31.48	-1	2693053..2693160	-	35	42528155	-	TDE2655	-	hypothetical protein
2637	 37.04	0	2693205..2693960	+	251	42528156	cbiK	TDE2656	-	cobalt chelatase
2638	 31.54	0	2693962..2694630	+	222	42528157	-	TDE2657	-	precorrin-2 C20-methyltransferase, putative
2639	 35.04	0	2694634..2695923	+	429	42528158	-	TDE2658	-	cobyrinic acid a,c-diamide synthase, putative
2640	 39.55	0	2695990..2697243	+	417	42528159	-	TDE2659	-	GAF domain/HD domain-containing protein
2641	 37.78	0	2697248..2697607	-	119	42528160	-	TDE2660	-	hypothetical protein
2642	 44.98	+1	2697614..2697862	-	82	42528161	-	TDE2661	-	hypothetical protein
2643	 36.69	0	2697877..2698740	-	287	42528162	-	TDE2662	-	putative lipoprotein
2644	 42.36	0	2698706..2702008	-	1100	42528163	ileS	TDE2663	-	isoleucyl-tRNA synthetase
2645	 26.13	-1	2702063..2702173	+	36	42528164	-	TDE2664	-	hypothetical protein
2646	 43.56	+1	2702157..2703671	+	504	42528165	guaB	TDE2665	-	inositol-5-monophosphate dehydrogenase
2647	 37.98	0	2703753..2704484	-	243	42528166	-	TDE2666	-	carbon-nitrogen family hydrolase
2648	 40.48	0	2704514..2704639	+	41	42528167	-	TDE2667	-	hypothetical protein
2649	 43.59	+1	2704636..2706156	-	506	42528168	glyA	TDE2668	-	serine hydroxymethyltransferase
2650	 31.29	-1	2706251..2707033	-	260	42528169	-	TDE2669	-	CDP-alcohol phosphatidyltransferase family protein
2651	 36.52	0	2707057..2708124	-	355	42528170	-	TDE2670	-	glycosyl transferase, group 4 family protein
2652	 37.08	0	2708233..2710182	-	649	42528171	-	TDE2671	-	hypothetical protein
2653	 39.30	0	2710350..2711690	+	446	42528172	-	TDE2672	-	TPR domain-containing protein
2654	 35.45	0	2711760..2712467	-	235	42528173	-	TDE2673	-	hypothetical protein
2655	 33.83	0	2712555..2713367	-	270	42528174	-	TDE2674	-	hypothetical protein
2656	 32.44	0	2713514..2714404	+	296	42528175	-	TDE2675	-	hypothetical protein
2657	 40.64	0	2714425..2715738	+	437	42528176	-	TDE2676	-	threonine synthase
2658	 35.56	0	2715744..2715878	+	44	42528177	-	TDE2677	-	hypothetical protein
2659	 37.52	0	2715875..2719480	-	1201	42528178	-	TDE2678	-	alpha-amylase family protein
2660	 31.41	-1	2719658..2720542	+	294	42528179	-	TDE2679	-	hypothetical protein
2661	 36.38	0	2720539..2721162	-	207	42528180	-	TDE2680	-	hypothetical protein
2662	 43.36	+1	2721159..2721497	-	112	42528181	-	TDE2681	-	hypothetical protein
2663	 41.15	0	2721478..2723448	-	656	42528182	-	TDE2682	-	hypothetical protein
2664	 37.39	0	2723457..2724245	-	262	42528183	fliA	TDE2683	-	RNA polymerase sigma factor WhiG
2665	 40.36	0	2724270..2724938	-	222	42528184	-	TDE2684	-	hypothetical protein
2666	 37.61	0	2724986..2725873	-	295	42528185	fleN	TDE2685	-	flagellar synthesis regulator FleN
2667	 37.21	0	2725875..2727215	-	446	42528186	flhF	TDE2686	-	flagellar biosynthetic protein FlhF
2668	 37.02	0	2727286..2728344	-	352	42528187	-	TDE2687	-	L-threonine-O-3-phosphate decarboxylase, putative
2669	 23.02	-2	2728397..2728522	+	41	42528188	-	TDE2688	-	hypothetical protein
2670	 34.61	0	2728516..2728908	+	130	42528189	-	TDE2689	-	hypothetical protein
2671	 42.31	0	2728833..2728988	-	51	42528190	-	TDE2690	-	hypothetical protein
2672	 31.47	-1	2728978..2729406	+	142	42528191	-	TDE2691	-	hypothetical protein
2673	 43.45	+1	2729561..2731171	+	536	42528192	pyrG	TDE2692	-	CTP synthetase
2674	 40.69	0	2731273..2734074	+	933	42528193	-	TDE2693	-	ankyrin repeat-containing protein
2675	 42.33	0	2734169..2736391	-	740	42528194	-	TDE2694	-	hypothetical protein
2676	 36.88	0	2736464..2739169	-	901	42528195	-	TDE2695	-	fused transcript cleavage factor/uncharacterized domain-containing protein
2677	 37.91	0	2739188..2740126	-	312	42528196	-	TDE2696	-	TPR domain-containing protein
2678	 36.95	0	2740400..2741173	+	257	42528197	-	TDE2697	-	3-oxo-5-alpha-steroid 4-dehydrogenase family protein
2679	 39.72	0	2741192..2742835	+	547	42528198	-	TDE2698	-	hypothetical protein
2680	 38.85	0	2742856..2744523	+	555	42528199	-	TDE2699	-	antigen, putative
37.25	MEAN

5.76	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.