IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.25   STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2549	 43.73	+1	2595282..2596445	+	387	42528068	thiI	TDE2568	-	thiamine biosynthesis protein ThiI
2550	 42.95	0	2596448..2597518	+	356	42528069	aroF	TDE2569	-	phospho-2-dehydro-3-deoxyheptonate aldolase
2551	 44.72	+1	2597515..2597997	+	160	42528070	rnhA	TDE2570	-	ribonuclease HI
2552	 44.16	+1	2598012..2598242	-	76	42528071	-	TDE2571	-	hypothetical protein
2553	 37.71	0	2598235..2598828	-	197	42528072	pgsA	TDE2572	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
2554	 42.65	0	2598942..2600519	+	525	42528073	pgi	TDE2573	-	glucose-6-phosphate isomerase
2555	 41.16	0	2600516..2601154	+	212	42528074	-	TDE2574	-	hypothetical protein
2556	 38.70	0	2601158..2601772	+	204	42528075	-	TDE2575	-	hypothetical protein
2557	 41.63	0	2601812..2602546	+	244	42528076	-	TDE2576	-	RNA pseudouridylate synthase family protein
2558	 30.68	-1	2602580..2602993	-	137	42528077	-	TDE2577	-	hypothetical protein
2559	 32.94	0	2602990..2603244	-	84	42528078	-	TDE2578	-	hypothetical protein
2560	 45.95	+1	2603378..2605414	-	678	42528079	recG	TDE2579	-	ATP-dependent DNA helicase RecG
2561	 29.69	-1	2605586..2610910	+	1774	42528080	-	TDE2580	-	GGDEF domain-containing protein
2562	 24.64	-2	2610922..2611692	+	256	42528081	-	TDE2581	-	hypothetical protein
2563	 29.21	-1	2611929..2616224	+	1431	42528082	-	TDE2582	-	GGDEF domain-containing protein
2564	 18.18	-2	2616462..2616560	+	32	42528083	-	TDE2583	-	hypothetical protein
2565	 39.53	0	2616553..2618004	+	483	42528084	-	TDE2584	-	dipeptidase
2566	 35.27	0	2618066..2620393	-	775	42528085	-	TDE2585	-	methyl-accepting chemotaxis domain/unknown domain-containing protein
2567	 43.07	+1	2620341..2622179	-	612	42528086	-	TDE2586	-	DNA polymerase III subunits gamma and tau
2568	 40.10	0	2622331..2623350	+	339	42528087	-	TDE2587	-	endonuclease/exonuclease/phosphatase family protein
2569	 39.07	0	2623636..2624838	+	400	42528088	-	TDE2588	-	integrase domain-containing protein
2570	 39.30	0	2625090..2626496	-	468	42528089	-	TDE2589	-	putative aminopeptidase 1
2571	 23.68	-2	2626622..2626735	+	37	42528090	-	TDE2590	-	hypothetical protein
2572	 37.78	0	2626710..2627069	+	119	42528091	-	TDE2591	-	rhodanese-like domain-containing protein
2573	 37.48	0	2627166..2627792	+	208	42528092	-	TDE2592	-	DbpA RNA-binding domain-containing protein
2574	 37.73	0	2627887..2629023	+	378	42528093	-	TDE2593	-	sigma-54-binding protein
2575	 36.51	0	2629020..2630120	-	366	42528094	-	TDE2594	-	hypothetical protein
2576	 33.43	0	2630124..2631170	-	348	42528095	-	TDE2595	-	hypothetical protein
2577	 38.32	0	2631167..2632129	-	320	42528096	-	TDE2596	-	hypothetical protein
2578	 42.38	0	2632126..2632755	-	209	42528097	rpe	TDE2597	-	ribulose-phosphate 3-epimerase
2579	 36.44	0	2632809..2633420	-	203	42528098	-	TDE2598	-	hypothetical protein
2580	 40.32	0	2633424..2634053	-	209	42528099	tmk	TDE2599	-	thymidylate kinase
2581	 34.48	0	2634098..2638615	+	1505	42528100	-	TDE2600	-	hypothetical protein
2582	 35.08	0	2638630..2641086	+	818	42528101	-	TDE2601	-	surface antigen, putative
2583	 37.31	0	2641096..2641623	+	175	42528102	-	TDE2602	-	outer membrane protein, putative
2584	 43.31	+1	2641616..2644291	+	891	42528103	mutS	TDE2603	-	DNA mismatch repair protein
2585	 27.27	-1	2644314..2645864	-	516	42528104	-	TDE2604	-	hypothetical protein
2586	 37.02	0	2645958..2646500	+	180	42528105	-	TDE2605	-	phosphoglycerate mutase family protein
2587	 47.06	+1	2646587..2648611	+	674	42528106	hutU	TDE2606	-	urocanate hydratase
2588	 38.12	0	2648726..2649394	+	222	42528107	-	TDE2607	-	hypothetical protein
2589	 38.61	0	2649415..2650533	+	372	42528108	-	TDE2608	-	hypothetical protein
2590	 40.17	0	2650561..2651964	+	467	42528109	-	TDE2609	-	putative tRNA modifying protein
2591	 33.33	0	2651944..2652060	-	38	42528110	-	TDE2610	-	hypothetical protein
2592	 38.69	0	2652120..2654339	+	739	42528111	-	TDE2611	-	hypothetical protein
2593	 35.81	0	2654347..2655519	+	390	42528112	-	TDE2612	-	hypothetical protein
2594	 35.56	0	2655512..2655916	+	134	42528113	-	TDE2613	-	hypothetical protein
2595	 37.46	0	2656108..2657223	-	371	42528114	-	TDE2614	-	ApbE family protein
2596	 37.93	0	2657236..2657757	-	173	42528115	lspA	TDE2615	-	signal peptidase II
2597	 40.00	0	2657770..2658429	-	219	42528116	-	TDE2616	-	cyclic nucleotide-binding protein
2598	 41.82	0	2658433..2659434	-	333	42528117	-	TDE2617	-	cyclic nucleotide-binding protein
2599	 45.21	+1	2659532..2660407	+	291	42528118	-	TDE2618	-	phosphotransferase domain-containing protein
2600	 38.11	0	2660420..2661634	+	404	42528119	-	TDE2619	-	RNA methyltransferase
2601	 35.48	0	2661678..2662097	+	139	42528120	-	TDE2620	-	hypothetical protein
2602	 36.05	0	2662111..2662257	+	48	42528121	-	TDE2621	-	hypothetical protein
2603	 48.27	+1	2662268..2663680	-	470	42528122	-	TDE2622	-	ABC transporter, ATP-binding protein
2604	 48.72	+1	2663674..2664414	-	246	42528123	-	TDE2623	-	hypothetical protein
2605	 43.76	+1	2664411..2664995	-	194	42528124	-	TDE2624	-	hypothetical protein
2606	 48.97	+2	2665015..2666754	-	579	42528125	-	TDE2625	-	ABC transporter, ATP-binding/permease protein
2607	 48.34	+1	2666747..2668492	-	581	42528126	-	TDE2626	-	ABC transporter, ATP-binding/permease protein
2608	 44.99	+1	2668622..2669230	-	202	42528127	-	TDE2627	-	TetR family transcriptional regulator
2609	 41.03	0	2669208..2669402	+	64	42528128	-	TDE2628	-	hypothetical protein
2610	 47.23	+1	2669469..2671022	+	517	42528129	-	TDE2629	-	peptide ABC transporter, periplasmic peptide-binding protein, putative
2611	 44.34	+1	2671019..2671972	+	317	42528130	-	TDE2630	-	peptide ABC transporter, permease protein, putative
2612	 48.12	+1	2671969..2672793	+	274	42528131	-	TDE2631	-	peptide ABC transporter, permease protein, putative
2613	 49.32	+2	2672790..2674484	+	564	42528132	-	TDE2632	-	peptide ABC transporter, ATP-binding protein, putative
2614	 37.12	0	2674499..2674762	+	87	42528133	-	TDE2633	-	hypothetical protein
2615	 40.89	0	2674765..2675571	+	268	42528134	-	TDE2634	-	hypothetical protein
2616	 34.33	0	2675593..2676093	+	166	42528135	-	TDE2635	-	acetyltransferase
2617	 44.50	+1	2676210..2676809	+	199	42528136	-	TDE2636	-	hypothetical protein
2618	 43.05	+1	2676882..2677406	-	174	42528137	-	TDE2637	-	hypothetical protein
2619	 36.84	0	2677633..2678259	+	208	42528138	-	TDE2638	-	hypothetical protein
2620	 42.49	0	2678260..2680149	+	629	42528139	pepF	TDE2639	-	oligoendopeptidase F
2621	 42.59	0	2680174..2681091	+	305	42528140	-	TDE2640	-	hypothetical protein
2622	 34.35	0	2681142..2682128	+	328	42528141	-	TDE2641	-	Fic family protein
2623	 28.47	-1	2682201..2682344	-	47	42528142	-	TDE2642	-	hypothetical protein
2624	 44.42	+1	2682325..2683794	+	489	42528143	-	TDE2643	-	oxidoreductase, FAD-dependent
2625	 43.87	+1	2683791..2685119	+	442	42528144	-	TDE2644	-	pyridine nucleotide-disulphide oxidoreductase family protein
2626	 40.97	0	2685112..2685504	+	130	42528145	-	TDE2645	-	hypothetical protein
2627	 39.47	0	2685488..2686090	+	200	42528146	-	TDE2646	-	ABC transporter, ATP-binding protein, putative
2628	 38.45	0	2686092..2687087	-	331	42528147	-	TDE2647	-	lipoyltransferase and lipoate-protein ligase family protein
2629	 26.15	-1	2687172..2687867	-	231	42528148	-	TDE2648	-	hypothetical protein
2630	 32.18	0	2687869..2688738	-	289	42528149	-	TDE2649	-	ABC transporter, ATP-binding protein
2631	 35.25	0	2688756..2689121	-	121	42528150	-	TDE2650	-	transcriptional regulator, putative
2632	 26.87	-1	2689289..2690278	+	329	42528151	-	TDE2651	-	ABC transporter, ATP-binding protein
2633	 25.79	-1	2690275..2691030	+	251	42528152	-	TDE2652	-	hypothetical protein
2634	 26.23	-1	2691031..2691804	+	257	42528153	-	TDE2653	-	hypothetical protein
2635	 36.63	0	2691815..2693059	+	414	42528154	-	TDE2654	-	macrolide efflux protein, putative
2636	 31.48	-1	2693053..2693160	-	35	42528155	-	TDE2655	-	hypothetical protein
2637	 37.04	0	2693205..2693960	+	251	42528156	cbiK	TDE2656	-	cobalt chelatase
2638	 31.54	0	2693962..2694630	+	222	42528157	-	TDE2657	-	precorrin-2 C20-methyltransferase, putative
2639	 35.04	0	2694634..2695923	+	429	42528158	-	TDE2658	-	cobyrinic acid a,c-diamide synthase, putative
2640	 39.55	0	2695990..2697243	+	417	42528159	-	TDE2659	-	GAF domain/HD domain-containing protein
2641	 37.78	0	2697248..2697607	-	119	42528160	-	TDE2660	-	hypothetical protein
2642	 44.98	+1	2697614..2697862	-	82	42528161	-	TDE2661	-	hypothetical protein
2643	 36.69	0	2697877..2698740	-	287	42528162	-	TDE2662	-	putative lipoprotein
2644	 42.36	0	2698706..2702008	-	1100	42528163	ileS	TDE2663	-	isoleucyl-tRNA synthetase
2645	 26.13	-1	2702063..2702173	+	36	42528164	-	TDE2664	-	hypothetical protein
2646	 43.56	+1	2702157..2703671	+	504	42528165	guaB	TDE2665	-	inositol-5-monophosphate dehydrogenase
2647	 37.98	0	2703753..2704484	-	243	42528166	-	TDE2666	-	carbon-nitrogen family hydrolase
2648	 40.48	0	2704514..2704639	+	41	42528167	-	TDE2667	-	hypothetical protein
37.25	MEAN

5.76	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.