IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.25   STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2507	 36.71	0	2553676..2555124	-	482	42528026	-	TDE2526	-	hypothetical protein
2508	 40.73	0	2555539..2556309	-	256	42528027	-	TDE2527	-	hypothetical protein
2509	 36.22	0	2556310..2557002	-	230	42528028	-	TDE2528	-	hypothetical protein
2510	 41.38	0	2557068..2557328	-	86	42528029	-	TDE2529	-	hypothetical protein
2511	 35.99	0	2557502..2558329	+	275	42528030	-	TDE2530	-	radical SAM domain-containing protein
2512	 30.67	-1	2558381..2558605	+	74	42528031	-	TDE2531	-	hypothetical protein
2513	 28.01	-1	2558586..2559017	+	143	42528032	-	TDE2532	-	PilT domain-containing protein
2514	 39.10	0	2559104..2560300	+	398	42528033	-	TDE2533	-	hypothetical protein
2515	 40.76	0	2560284..2560916	+	210	42528034	nth	TDE2534	-	endonuclease III
2516	 41.31	0	2561032..2562447	+	471	42528035	pyk	TDE2535	-	pyruvate kinase
2517	 40.87	0	2562460..2563401	+	313	42528036	-	TDE2536	-	hypothetical protein
2518	 35.28	0	2563406..2563918	+	170	42528037	-	TDE2537	-	hypothetical protein
2519	 30.39	-1	2563925..2564332	+	135	42528038	-	TDE2538	-	hypothetical protein
2520	 37.97	0	2564364..2565248	-	294	42528039	-	TDE2539	-	hypothetical protein
2521	 38.21	0	2565285..2568071	-	928	42528040	-	TDE2540	-	putative lipoprotein
2522	 40.95	0	2568305..2569249	+	314	42528041	-	TDE2541	-	hypothetical protein
2523	 48.20	+1	2569531..2570916	-	461	42528042	-	TDE2542	-	antigen, putative
2524	 43.94	+1	2570843..2571040	-	65	42528043	-	TDE2543	-	hypothetical protein
2525	 39.22	0	2571025..2571126	-	33	42528044	-	TDE2544	-	hypothetical protein
2526	 41.71	0	2571260..2571904	-	214	42528045	-	TDE2545	-	hypothetical protein
2527	 40.00	0	2571967..2572851	-	294	42528046	-	TDE2546	-	hypothetical protein
2528	 35.96	0	2573017..2573244	+	75	42528047	-	TDE2547	-	hypothetical protein
2529	 37.04	0	2573154..2573288	-	44	42528048	-	TDE2548	-	hypothetical protein
2530	 43.19	+1	2573425..2575524	+	699	42528049	-	TDE2549	-	methyl-accepting chemotaxis protein
2531	 38.07	0	2575610..2576305	-	231	42528050	-	TDE2550	-	hypothetical protein
2532	 42.48	0	2576302..2577372	-	356	42528051	-	TDE2551	-	hypothetical protein
2533	 38.98	0	2577460..2579034	-	524	42528052	-	TDE2552	-	ABC transporter, ATP-binding/permease protein
2534	 44.74	+1	2579137..2580723	-	528	42528053	lysK	TDE2553	-	lysyl-tRNA synthetase
2535	 45.62	+1	2580885..2581763	+	292	42528054	-	TDE2554	-	heat shock protein 34
2536	 43.59	+1	2581753..2582376	+	207	42528055	cobH	TDE2555	-	precorrin-8X methylmutase
2537	 33.69	0	2582406..2583251	-	281	42528056	-	TDE2556	-	hypothetical protein
2538	 34.06	0	2583336..2583473	-	45	42528057	-	TDE2557	-	hypothetical protein
2539	 41.71	0	2583819..2585477	-	552	42528058	-	TDE2558	-	ABC transporter, ATP-binding/permease protein
2540	 40.64	0	2585474..2587294	-	606	42528059	-	TDE2559	-	ABC transporter, ATP-binding/permease protein
2541	 32.04	0	2587451..2588299	+	282	42528060	-	TDE2560	-	hypothetical protein
2542	 33.19	0	2588354..2589037	+	227	42528061	-	TDE2561	-	ABC transporter, ATP-binding protein
2543	 40.62	0	2589039..2589848	+	269	42528062	-	TDE2562	-	cation ABC transporter, permease protein, putative
2544	 33.85	0	2589934..2590128	+	64	42528063	-	TDE2563	-	hypothetical protein
2545	 34.22	0	2590115..2590453	+	112	42528064	-	TDE2564	-	PemK family protein
2546	 39.00	0	2590482..2591363	-	293	42528065	-	TDE2565	-	hypothetical protein
2547	 41.70	0	2591422..2594277	-	951	42528066	-	TDE2566	-	hypothetical protein
2548	 39.82	0	2594288..2595166	-	292	42528067	-	TDE2567	-	hypothetical protein
2549	 43.73	+1	2595282..2596445	+	387	42528068	thiI	TDE2568	-	thiamine biosynthesis protein ThiI
2550	 42.95	0	2596448..2597518	+	356	42528069	aroF	TDE2569	-	phospho-2-dehydro-3-deoxyheptonate aldolase
2551	 44.72	+1	2597515..2597997	+	160	42528070	rnhA	TDE2570	-	ribonuclease HI
2552	 44.16	+1	2598012..2598242	-	76	42528071	-	TDE2571	-	hypothetical protein
2553	 37.71	0	2598235..2598828	-	197	42528072	pgsA	TDE2572	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
2554	 42.65	0	2598942..2600519	+	525	42528073	pgi	TDE2573	-	glucose-6-phosphate isomerase
2555	 41.16	0	2600516..2601154	+	212	42528074	-	TDE2574	-	hypothetical protein
2556	 38.70	0	2601158..2601772	+	204	42528075	-	TDE2575	-	hypothetical protein
2557	 41.63	0	2601812..2602546	+	244	42528076	-	TDE2576	-	RNA pseudouridylate synthase family protein
2558	 30.68	-1	2602580..2602993	-	137	42528077	-	TDE2577	-	hypothetical protein
2559	 32.94	0	2602990..2603244	-	84	42528078	-	TDE2578	-	hypothetical protein
2560	 45.95	+1	2603378..2605414	-	678	42528079	recG	TDE2579	-	ATP-dependent DNA helicase RecG
2561	 29.69	-1	2605586..2610910	+	1774	42528080	-	TDE2580	-	GGDEF domain-containing protein
2562	 24.64	-2	2610922..2611692	+	256	42528081	-	TDE2581	-	hypothetical protein
2563	 29.21	-1	2611929..2616224	+	1431	42528082	-	TDE2582	-	GGDEF domain-containing protein
2564	 18.18	-2	2616462..2616560	+	32	42528083	-	TDE2583	-	hypothetical protein
2565	 39.53	0	2616553..2618004	+	483	42528084	-	TDE2584	-	dipeptidase
2566	 35.27	0	2618066..2620393	-	775	42528085	-	TDE2585	-	methyl-accepting chemotaxis domain/unknown domain-containing protein
2567	 43.07	+1	2620341..2622179	-	612	42528086	-	TDE2586	-	DNA polymerase III subunits gamma and tau
2568	 40.10	0	2622331..2623350	+	339	42528087	-	TDE2587	-	endonuclease/exonuclease/phosphatase family protein
2569	 39.07	0	2623636..2624838	+	400	42528088	-	TDE2588	-	integrase domain-containing protein
2570	 39.30	0	2625090..2626496	-	468	42528089	-	TDE2589	-	putative aminopeptidase 1
2571	 23.68	-2	2626622..2626735	+	37	42528090	-	TDE2590	-	hypothetical protein
2572	 37.78	0	2626710..2627069	+	119	42528091	-	TDE2591	-	rhodanese-like domain-containing protein
2573	 37.48	0	2627166..2627792	+	208	42528092	-	TDE2592	-	DbpA RNA-binding domain-containing protein
2574	 37.73	0	2627887..2629023	+	378	42528093	-	TDE2593	-	sigma-54-binding protein
2575	 36.51	0	2629020..2630120	-	366	42528094	-	TDE2594	-	hypothetical protein
2576	 33.43	0	2630124..2631170	-	348	42528095	-	TDE2595	-	hypothetical protein
2577	 38.32	0	2631167..2632129	-	320	42528096	-	TDE2596	-	hypothetical protein
2578	 42.38	0	2632126..2632755	-	209	42528097	rpe	TDE2597	-	ribulose-phosphate 3-epimerase
2579	 36.44	0	2632809..2633420	-	203	42528098	-	TDE2598	-	hypothetical protein
2580	 40.32	0	2633424..2634053	-	209	42528099	tmk	TDE2599	-	thymidylate kinase
2581	 34.48	0	2634098..2638615	+	1505	42528100	-	TDE2600	-	hypothetical protein
2582	 35.08	0	2638630..2641086	+	818	42528101	-	TDE2601	-	surface antigen, putative
2583	 37.31	0	2641096..2641623	+	175	42528102	-	TDE2602	-	outer membrane protein, putative
2584	 43.31	+1	2641616..2644291	+	891	42528103	mutS	TDE2603	-	DNA mismatch repair protein
2585	 27.27	-1	2644314..2645864	-	516	42528104	-	TDE2604	-	hypothetical protein
2586	 37.02	0	2645958..2646500	+	180	42528105	-	TDE2605	-	phosphoglycerate mutase family protein
2587	 47.06	+1	2646587..2648611	+	674	42528106	hutU	TDE2606	-	urocanate hydratase
2588	 38.12	0	2648726..2649394	+	222	42528107	-	TDE2607	-	hypothetical protein
2589	 38.61	0	2649415..2650533	+	372	42528108	-	TDE2608	-	hypothetical protein
2590	 40.17	0	2650561..2651964	+	467	42528109	-	TDE2609	-	putative tRNA modifying protein
2591	 33.33	0	2651944..2652060	-	38	42528110	-	TDE2610	-	hypothetical protein
2592	 38.69	0	2652120..2654339	+	739	42528111	-	TDE2611	-	hypothetical protein
2593	 35.81	0	2654347..2655519	+	390	42528112	-	TDE2612	-	hypothetical protein
2594	 35.56	0	2655512..2655916	+	134	42528113	-	TDE2613	-	hypothetical protein
2595	 37.46	0	2656108..2657223	-	371	42528114	-	TDE2614	-	ApbE family protein
2596	 37.93	0	2657236..2657757	-	173	42528115	lspA	TDE2615	-	signal peptidase II
2597	 40.00	0	2657770..2658429	-	219	42528116	-	TDE2616	-	cyclic nucleotide-binding protein
2598	 41.82	0	2658433..2659434	-	333	42528117	-	TDE2617	-	cyclic nucleotide-binding protein
2599	 45.21	+1	2659532..2660407	+	291	42528118	-	TDE2618	-	phosphotransferase domain-containing protein
2600	 38.11	0	2660420..2661634	+	404	42528119	-	TDE2619	-	RNA methyltransferase
2601	 35.48	0	2661678..2662097	+	139	42528120	-	TDE2620	-	hypothetical protein
2602	 36.05	0	2662111..2662257	+	48	42528121	-	TDE2621	-	hypothetical protein
2603	 48.27	+1	2662268..2663680	-	470	42528122	-	TDE2622	-	ABC transporter, ATP-binding protein
2604	 48.72	+1	2663674..2664414	-	246	42528123	-	TDE2623	-	hypothetical protein
2605	 43.76	+1	2664411..2664995	-	194	42528124	-	TDE2624	-	hypothetical protein
2606	 48.97	+2	2665015..2666754	-	579	42528125	-	TDE2625	-	ABC transporter, ATP-binding/permease protein
37.25	MEAN

5.76	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.