IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.25   STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2464	 35.77	0	2505970..2506749	-	259	42527983	-	TDE2483	-	hypothetical protein
2465	 38.86	0	2506743..2507810	-	355	42527984	-	TDE2484	-	hypothetical protein
2466	 46.36	+1	2507993..2509213	-	406	42527985	-	TDE2485	-	hypothetical protein
2467	 25.95	-1	2509377..2509931	+	184	42527986	-	TDE2486	-	hypothetical protein
2468	 36.09	0	2509947..2510453	+	168	42527987	-	TDE2487	-	acetyltransferase
2469	 41.82	0	2510485..2511474	-	329	42527988	-	TDE2488	-	HemK family modification methylase
2470	 45.95	+1	2511481..2512566	-	361	42527989	prfA	TDE2489	-	peptide chain release factor 1
2471	 45.03	+1	2512793..2514775	-	660	42527990	priA	TDE2490	-	primosomal protein N'
2472	 46.67	+1	2514795..2515589	-	264	42527991	-	TDE2491	-	DNA polymerase domain-containing protein
2473	 40.18	0	2515599..2516504	-	301	42527992	-	TDE2492	-	hypothetical protein
2474	 49.26	+2	2516835..2518454	-	539	42527993	-	TDE2493	-	hypothetical protein
2475	 55.80	+2	2518637..2518774	+	45	42527994	-	TDE2494	-	hypothetical protein
2476	 48.94	+2	2518825..2521143	-	772	42527995	-	TDE2495	-	hypothetical protein
2477	 39.09	0	2521260..2521988	-	242	42527996	-	TDE2496	-	methyl-accepting chemotaxis protein
2478	 32.35	0	2522072..2522173	-	33	42527997	-	TDE2497	-	hypothetical protein
2479	 39.84	0	2522284..2523051	-	255	42527998	-	TDE2498	-	metallo-beta-lactamase family protein
2480	 46.85	+1	2523281..2524042	-	253	42527999	-	TDE2499	-	hypothetical protein
2481	 47.21	+1	2524042..2524596	-	184	42528000	-	TDE2500	-	DJ-1 family protein
2482	 36.00	0	2524913..2525887	+	324	42528001	-	TDE2501	-	response regulator
2483	 36.34	0	2525874..2527904	+	676	42528002	-	TDE2502	-	sensor histidine kinase/response regulator
2484	 38.87	0	2527967..2529139	+	390	42528003	-	TDE2503	-	hypothetical protein
2485	 46.21	+1	2529141..2530157	+	338	42528004	gcp	TDE2504	-	O-sialoglycoprotein endopeptidase
2486	 41.01	0	2530265..2530681	+	138	42528005	-	TDE2505	-	hypothetical protein
2487	 44.28	+1	2530721..2531716	+	331	42528006	-	TDE2506	-	radical SAM domain-containing protein
2488	 33.33	0	2531733..2531825	-	30	42528007	-	TDE2507	-	hypothetical protein
2489	 37.94	0	2531814..2533181	+	455	42528008	-	TDE2508	-	hypothetical protein
2490	 26.33	-1	2533328..2534212	+	294	42528009	-	TDE2509	-	AraC family transcriptional regulator
2491	 36.10	0	2534322..2536055	+	577	42528010	-	TDE2510	-	ABC transporter, ATP-binding/permease protein
2492	 36.99	0	2536057..2537724	+	555	42528011	-	TDE2511	-	ABC transporter, ATP-binding/permease protein
2493	 38.72	0	2537793..2539166	+	457	42528012	-	TDE2512	-	aldehyde dehydrogenase (NADP) family protein
2494	 34.90	0	2539184..2539948	+	254	42528013	gidB	TDE2513	-	glucose-inhibited division protein B
2495	 42.04	0	2539945..2540622	-	225	42528014	-	TDE2514	-	serine/threonine protein phosphatase family protein
2496	 49.54	+2	2541062..2542147	-	361	42528015	-	TDE2515	-	hypothetical protein
2497	 38.71	0	2542161..2542253	+	30	42528016	-	TDE2516	-	hypothetical protein
2498	 47.44	+1	2542544..2543932	-	462	42528017	radA	TDE2517	-	DNA repair protein RadA
2499	 39.35	0	2543965..2544795	-	276	42528018	-	TDE2518	-	nucleotide-binding protein
2500	 38.49	0	2544929..2546539	-	536	42528019	-	TDE2519	-	hypothetical protein
2501	 33.65	0	2546608..2547888	-	426	42528020	-	TDE2520	-	hypothetical protein
2502	 39.17	0	2548045..2548164	-	39	42528021	-	TDE2521	-	hypothetical protein
2503	 35.41	0	2548238..2550064	+	608	42528022	-	TDE2522	-	ABC transporter, ATP-binding protein
2504	 31.43	-1	2550051..2550575	+	174	42528023	-	TDE2523	-	hypothetical protein
2505	 34.75	0	2550596..2551867	+	423	42528024	-	TDE2524	-	ABC transporter, ATP-binding protein
2506	 32.25	0	2551925..2553673	-	582	42528025	-	TDE2525	-	hypothetical protein
2507	 36.71	0	2553676..2555124	-	482	42528026	-	TDE2526	-	hypothetical protein
2508	 40.73	0	2555539..2556309	-	256	42528027	-	TDE2527	-	hypothetical protein
2509	 36.22	0	2556310..2557002	-	230	42528028	-	TDE2528	-	hypothetical protein
2510	 41.38	0	2557068..2557328	-	86	42528029	-	TDE2529	-	hypothetical protein
2511	 35.99	0	2557502..2558329	+	275	42528030	-	TDE2530	-	radical SAM domain-containing protein
2512	 30.67	-1	2558381..2558605	+	74	42528031	-	TDE2531	-	hypothetical protein
2513	 28.01	-1	2558586..2559017	+	143	42528032	-	TDE2532	-	PilT domain-containing protein
2514	 39.10	0	2559104..2560300	+	398	42528033	-	TDE2533	-	hypothetical protein
2515	 40.76	0	2560284..2560916	+	210	42528034	nth	TDE2534	-	endonuclease III
2516	 41.31	0	2561032..2562447	+	471	42528035	pyk	TDE2535	-	pyruvate kinase
2517	 40.87	0	2562460..2563401	+	313	42528036	-	TDE2536	-	hypothetical protein
2518	 35.28	0	2563406..2563918	+	170	42528037	-	TDE2537	-	hypothetical protein
2519	 30.39	-1	2563925..2564332	+	135	42528038	-	TDE2538	-	hypothetical protein
2520	 37.97	0	2564364..2565248	-	294	42528039	-	TDE2539	-	hypothetical protein
2521	 38.21	0	2565285..2568071	-	928	42528040	-	TDE2540	-	putative lipoprotein
2522	 40.95	0	2568305..2569249	+	314	42528041	-	TDE2541	-	hypothetical protein
2523	 48.20	+1	2569531..2570916	-	461	42528042	-	TDE2542	-	antigen, putative
2524	 43.94	+1	2570843..2571040	-	65	42528043	-	TDE2543	-	hypothetical protein
2525	 39.22	0	2571025..2571126	-	33	42528044	-	TDE2544	-	hypothetical protein
2526	 41.71	0	2571260..2571904	-	214	42528045	-	TDE2545	-	hypothetical protein
2527	 40.00	0	2571967..2572851	-	294	42528046	-	TDE2546	-	hypothetical protein
2528	 35.96	0	2573017..2573244	+	75	42528047	-	TDE2547	-	hypothetical protein
2529	 37.04	0	2573154..2573288	-	44	42528048	-	TDE2548	-	hypothetical protein
2530	 43.19	+1	2573425..2575524	+	699	42528049	-	TDE2549	-	methyl-accepting chemotaxis protein
2531	 38.07	0	2575610..2576305	-	231	42528050	-	TDE2550	-	hypothetical protein
2532	 42.48	0	2576302..2577372	-	356	42528051	-	TDE2551	-	hypothetical protein
2533	 38.98	0	2577460..2579034	-	524	42528052	-	TDE2552	-	ABC transporter, ATP-binding/permease protein
2534	 44.74	+1	2579137..2580723	-	528	42528053	lysK	TDE2553	-	lysyl-tRNA synthetase
2535	 45.62	+1	2580885..2581763	+	292	42528054	-	TDE2554	-	heat shock protein 34
2536	 43.59	+1	2581753..2582376	+	207	42528055	cobH	TDE2555	-	precorrin-8X methylmutase
2537	 33.69	0	2582406..2583251	-	281	42528056	-	TDE2556	-	hypothetical protein
2538	 34.06	0	2583336..2583473	-	45	42528057	-	TDE2557	-	hypothetical protein
2539	 41.71	0	2583819..2585477	-	552	42528058	-	TDE2558	-	ABC transporter, ATP-binding/permease protein
2540	 40.64	0	2585474..2587294	-	606	42528059	-	TDE2559	-	ABC transporter, ATP-binding/permease protein
2541	 32.04	0	2587451..2588299	+	282	42528060	-	TDE2560	-	hypothetical protein
2542	 33.19	0	2588354..2589037	+	227	42528061	-	TDE2561	-	ABC transporter, ATP-binding protein
2543	 40.62	0	2589039..2589848	+	269	42528062	-	TDE2562	-	cation ABC transporter, permease protein, putative
2544	 33.85	0	2589934..2590128	+	64	42528063	-	TDE2563	-	hypothetical protein
2545	 34.22	0	2590115..2590453	+	112	42528064	-	TDE2564	-	PemK family protein
2546	 39.00	0	2590482..2591363	-	293	42528065	-	TDE2565	-	hypothetical protein
2547	 41.70	0	2591422..2594277	-	951	42528066	-	TDE2566	-	hypothetical protein
2548	 39.82	0	2594288..2595166	-	292	42528067	-	TDE2567	-	hypothetical protein
2549	 43.73	+1	2595282..2596445	+	387	42528068	thiI	TDE2568	-	thiamine biosynthesis protein ThiI
2550	 42.95	0	2596448..2597518	+	356	42528069	aroF	TDE2569	-	phospho-2-dehydro-3-deoxyheptonate aldolase
2551	 44.72	+1	2597515..2597997	+	160	42528070	rnhA	TDE2570	-	ribonuclease HI
2552	 44.16	+1	2598012..2598242	-	76	42528071	-	TDE2571	-	hypothetical protein
2553	 37.71	0	2598235..2598828	-	197	42528072	pgsA	TDE2572	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
2554	 42.65	0	2598942..2600519	+	525	42528073	pgi	TDE2573	-	glucose-6-phosphate isomerase
2555	 41.16	0	2600516..2601154	+	212	42528074	-	TDE2574	-	hypothetical protein
2556	 38.70	0	2601158..2601772	+	204	42528075	-	TDE2575	-	hypothetical protein
2557	 41.63	0	2601812..2602546	+	244	42528076	-	TDE2576	-	RNA pseudouridylate synthase family protein
2558	 30.68	-1	2602580..2602993	-	137	42528077	-	TDE2577	-	hypothetical protein
2559	 32.94	0	2602990..2603244	-	84	42528078	-	TDE2578	-	hypothetical protein
2560	 45.95	+1	2603378..2605414	-	678	42528079	recG	TDE2579	-	ATP-dependent DNA helicase RecG
2561	 29.69	-1	2605586..2610910	+	1774	42528080	-	TDE2580	-	GGDEF domain-containing protein
2562	 24.64	-2	2610922..2611692	+	256	42528081	-	TDE2581	-	hypothetical protein
2563	 29.21	-1	2611929..2616224	+	1431	42528082	-	TDE2582	-	GGDEF domain-containing protein
37.25	MEAN

5.76	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.