IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.25   STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
195	 27.18	-1	232711..232905	+	64	42525714	-	TDE0196	-	hypothetical protein
196	 27.82	-1	232905..233285	+	126	42525715	-	TDE0197	-	PilT domain-containing protein
197	 41.01	0	233295..234284	+	329	42525716	-	TDE0198	-	hypothetical protein
198	 39.02	0	234289..234798	-	169	42525717	-	TDE0199	-	hypothetical protein
199	 42.56	0	234761..235432	+	223	42525718	-	TDE0200	-	tetrapyrrole methylase family protein
200	 35.11	0	235503..235784	+	93	42525719	-	TDE0201	-	hypothetical protein
201	 37.15	0	235960..236982	-	340	42525720	-	TDE0202	-	hypothetical protein
202	 34.30	0	236810..237118	+	102	42525721	-	TDE0203	-	hypothetical protein
203	 42.93	0	237108..238628	+	506	42525722	gltX	TDE0204	-	glutamyl-tRNA synthetase
204	 37.09	0	238684..239748	+	354	42525723	-	TDE0205	-	adenylate/guanylate cyclase catalytic domain-containing protein
205	 29.19	-1	239761..241617	-	618	42525724	-	TDE0206	-	surface antigen, putative
206	 42.77	0	241742..243097	+	451	42525725	-	TDE0207	-	GntP family permease
207	 44.64	+1	243122..244288	+	388	42525726	glxK	TDE0208	-	glycerate kinase
208	 38.85	0	244335..245621	+	428	42525727	-	TDE0209	-	arsenical pump membrane protein, putative
209	 39.53	0	245691..246206	+	171	42525728	cobO	TDE0210	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
210	 33.88	0	246645..247376	-	243	42525729	-	TDE0211	-	ABC transporter permease
211	 39.57	0	247348..248325	-	325	42525730	-	TDE0212	-	hypothetical protein
212	 35.35	0	248408..249550	-	380	42525731	-	TDE0213	-	TPR domain-containing protein
213	 38.62	0	249595..250539	-	314	42525732	-	TDE0214	-	hypothetical protein
214	 26.85	-1	251353..251460	-	35	42525733	-	TDE0215	-	hypothetical protein
215	 31.07	-1	251445..252680	+	411	42525734	-	TDE0216	-	hypothetical protein
216	 34.10	0	252688..253206	+	172	42525735	ogt	TDE0217	-	methylated-DNA--protein-cysteine methyltransferase
217	 20.16	-2	253299..253427	+	42	42525736	-	TDE0218	-	hypothetical protein
218	 31.08	-1	253446..253934	-	162	42525737	-	TDE0219	-	hypothetical protein
219	 31.21	-1	253955..254095	-	46	42525738	-	TDE0220	-	hypothetical protein
220	 32.72	0	254136..254786	-	216	42525739	-	TDE0221	-	hypothetical protein
221	 28.00	-1	254786..255310	-	174	42525740	-	TDE0222	-	acetyltransferase
222	 26.82	-1	255335..255994	-	219	42525741	-	TDE0223	-	hypothetical protein
223	 28.33	-1	256088..256207	-	39	42525742	-	TDE0224	-	hypothetical protein
224	 29.67	-1	256195..256467	-	90	42525743	-	TDE0225	-	prevent-host-death family protein
225	 31.67	0	256484..256783	-	99	42525744	-	TDE0226	-	hypothetical protein
226	 25.09	-2	257076..259709	+	877	42525745	-	TDE0227	-	adenine-specific DNA modification methyltransferase
227	 28.60	-1	259701..260693	-	330	42525746	-	TDE0228	-	hypothetical protein
228	 24.67	-2	260956..262836	-	626	42525747	-	TDE0229	-	ATPase family protein
229	 35.46	0	262889..263971	-	360	42525748	recF	TDE0230	-	DNA replication and repair protein RecF
230	 31.97	0	263980..265083	-	367	42525749	dnaN	TDE0231	-	DNA polymerase III, beta subunit
231	 34.46	0	265354..265884	+	176	42525750	-	TDE0232	-	appr-1-p processing domain-containing protein
232	 33.16	0	265877..267010	-	377	42525751	-	TDE0233	-	fic family protein
233	 38.58	0	267193..269004	+	603	42525752	-	TDE0234	-	ABC transporter ATP-binding protein
234	 26.59	-1	269062..269313	+	83	42525753	-	TDE0235	-	hypothetical protein
235	 30.17	-1	269297..269707	+	136	42525754	-	TDE0236	-	PilT domain-containing protein
236	 45.10	+1	269751..271280	-	509	42525755	-	TDE0237	-	hypothetical protein
237	 43.52	+1	271520..271843	+	107	42525756	trx	TDE0238	-	thioredoxin, selenocysteine-containing
238	 49.35	+2	271918..273072	-	384	42525757	grdD	TDE0239	-	glycine reductase complex protein GrdD
239	 45.87	+1	273085..274623	-	512	42525758	grdC	TDE0240	-	glycine reductase complex protein GrdC
240	 40.80	0	274791..275393	-	200	42525759	-	TDE0241	-	hypothetical protein
241	 34.18	0	275404..276114	-	236	42525760	-	TDE0242	-	hypothetical protein
242	 37.74	0	276116..277591	-	491	42525761	-	TDE0243	-	ABC transporter, ATP-binding protein
243	 40.93	0	277579..279303	-	574	42525762	-	TDE0244	-	ABC transporter, ATP-binding/permease protein
244	 40.95	0	279315..281033	-	572	42525763	-	TDE0245	-	ABC transporter, ATP-binding/permease protein
245	 36.49	0	281186..281755	-	189	42525764	-	TDE0246	-	TetR family transcriptional regulator
246	 43.36	+1	282208..282576	+	122	42525765	-	TDE0248	-	hypothetical protein
247	 39.54	0	282679..283242	+	187	42525766	-	TDE0249	-	flavoredoxin, putative
248	 42.23	0	283400..284725	-	441	42525767	-	TDE0250	-	sodium-dependent transporter, putative
249	 40.58	0	284807..286186	-	459	42525768	tnaA	TDE0251	-	tryptophanase
250	 38.22	0	286403..287221	+	272	42525769	-	TDE0252	-	hypothetical protein
251	 39.09	0	287292..288785	+	497	42525770	-	TDE0253	-	hypothetical protein
252	 30.22	-1	288794..289372	+	192	42525771	-	TDE0254	-	hypothetical protein
253	 46.81	+1	289408..290832	-	474	42525772	-	TDE0255	-	ABC transporter, ATP-binding protein
254	 43.35	+1	290832..291530	-	232	42525773	-	TDE0256	-	hypothetical protein
255	 39.64	0	291586..292188	-	200	42525774	-	TDE0257	-	hypothetical protein
256	 38.65	0	292222..292974	-	250	42525775	-	TDE0258	-	UbiE/COQ5 family methlytransferase
257	 37.75	0	293397..293849	+	150	42525776	-	TDE0259	-	MarR family transcriptional regulator
258	 37.17	0	293874..294785	+	303	42525777	-	TDE0260	-	iron-sulfur cluster-binding protein
259	 36.82	0	294782..295240	+	152	42525778	-	TDE0261	-	flavodoxin
260	 27.56	-1	295317..296390	-	357	42525779	-	TDE0262	-	hypothetical protein
261	 32.23	0	296490..297032	-	180	42525780	-	TDE0263	-	spermidine N1-acetyltransferase, putative
262	 31.09	-1	297111..297377	-	88	42525781	-	TDE0264	-	CopG family protein
263	 31.06	-1	297857..298648	-	263	42525782	-	TDE0266	-	hypothetical protein
264	 28.57	-1	298653..299198	-	181	42525783	-	TDE0267	-	HAM1 protein
265	 26.11	-1	299309..300139	-	276	42525784	-	TDE0268	-	hypothetical protein
266	 32.52	0	300286..300777	-	163	42525785	-	TDE0269	-	hypothetical protein
267	 28.27	-1	300935..301960	-	341	42525786	-	TDE0270	-	hypothetical protein
268	 34.03	0	302116..302259	+	47	42525787	-	TDE0271	-	hypothetical protein
269	 35.45	0	302346..302960	-	204	42525788	-	TDE0272	-	hypothetical protein
270	 43.63	+1	302957..304723	-	588	42525789	-	TDE0273	-	ABC transporter, ATP-binding/permease protein
271	 45.71	+1	304720..306513	-	597	42525790	-	TDE0274	-	ABC transporter, ATP-binding/permease protein
272	 31.08	-1	306773..307438	+	221	42525791	-	TDE0275	-	CAAX amino terminal protease family protein
273	 26.79	-1	307493..308119	-	208	42525792	-	TDE0276	-	HD domain-containing protein
274	 25.25	-2	308199..308594	-	131	42525793	-	TDE0277	-	hypothetical protein
275	 31.56	0	308591..308872	-	93	42525794	-	TDE0278	-	hypothetical protein
276	 31.08	-1	308898..309872	-	324	42525795	-	TDE0279	-	hypothetical protein
277	 31.84	0	309985..310386	-	133	42525796	-	TDE0280	-	PilT domain-containing protein
278	 35.35	0	310383..310580	-	65	42525797	-	TDE0281	-	hypothetical protein
279	 41.16	0	310745..312214	-	489	42525798	-	TDE0282	-	ABC transporter, ATP-binding protein
280	 45.67	+1	312211..312915	-	234	42525799	-	TDE0283	-	transporter, putative
281	 41.79	0	312916..313518	-	200	42525800	-	TDE0284	-	hypothetical protein
282	 46.39	+1	313762..315813	+	683	42525801	fusA-1	TDE0285	-	elongation factor G
283	 31.60	0	315858..317468	-	536	42525802	-	TDE0286	-	ABC transporter, ATP-binding protein
284	 32.03	0	317465..319150	-	561	42525803	-	TDE0287	-	ABC transporter, ATP-binding protein, putative
285	 31.92	0	319214..320134	-	306	42525804	-	TDE0288	-	hypothetical protein
286	 29.34	-1	320161..320736	-	191	42525805	-	TDE0289	-	hypothetical protein
287	 21.88	-2	320789..320884	-	31	42525806	-	TDE0290	-	hypothetical protein
288	 31.46	-1	320884..321150	-	88	42525807	-	TDE0291	-	hypothetical protein
289	 38.33	0	321265..322104	-	279	42525808	-	TDE0292	-	hypothetical protein
290	 38.53	0	322108..323511	-	467	42525809	-	TDE0293	-	MATE efflux family protein
291	 38.08	0	323563..324300	-	245	42525810	-	TDE0294	-	TrkA domain-containing protein
292	 45.10	+1	324310..326757	-	815	42525811	gyrA	TDE0295	-	DNA gyrase, A subunit
293	 43.44	+1	326932..327831	-	299	42525812	-	TDE0296	-	formiminotransferase, putative
294	 22.40	-2	327886..328068	-	60	42525813	-	TDE0297	-	hypothetical protein
37.25	MEAN

5.76	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.