IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.25   STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2372	 36.69	0	2419605..2420648	-	347	42527891	-	TDE2390	-	hypothetical protein
2373	 39.83	0	2420672..2421640	-	322	42527892	-	TDE2391	-	peptidyl-prolyl cis-trans isomerase
2374	 35.69	0	2421763..2422440	-	225	42527893	-	TDE2392	-	hypothetical protein
2375	 33.33	0	2422538..2422648	+	36	42527894	-	TDE2393	-	hypothetical protein
2376	 26.04	-1	2422607..2422702	-	31	42527895	-	TDE2394	-	hypothetical protein
2377	 37.69	0	2422834..2423544	-	236	42527896	-	TDE2395	-	Jag protein, putative
2378	 39.45	0	2423740..2425488	-	582	42527897	-	TDE2396	-	putative inner membrane protein translocase component YidC
2379	 32.58	0	2425523..2425654	-	43	42527898	-	TDE2397	-	hypothetical protein
2380	 37.84	0	2425676..2425897	-	73	42527899	-	TDE2398	-	hypothetical protein
2381	 37.82	0	2425894..2426250	-	118	42527900	rnpA	TDE2399	-	ribonuclease P protein component
2382	 48.08	+1	2426262..2426417	-	51	42527901	rpmH	TDE2400	-	50S ribosomal protein L34
2383	 43.98	+1	2426646..2427782	+	378	42527902	-	TDE2401	-	hypothetical protein
2384	 40.94	0	2427831..2428724	+	297	42527903	-	TDE2402	-	radical SAM domain-containing protein
2385	 43.30	+1	2428731..2429372	-	213	42527904	-	TDE2403	-	metallo-beta-lactamase family protein
2386	 39.80	0	2429403..2430794	-	463	42527905	-	TDE2404	-	RNA polymerase sigma-54 factor, putative
2387	 43.30	+1	2430806..2432140	-	444	42527906	-	TDE2405	-	hypothetical protein
2388	 45.33	+1	2432137..2433603	-	488	42527907	-	TDE2406	-	TldD/PmbA family protein
2389	 47.40	+1	2433734..2435197	-	487	42527908	purF	TDE2407	-	amidophosphoribosyltransferase
2390	 36.84	0	2435307..2435477	-	56	42527909	-	TDE2408	-	hypothetical protein
2391	 38.51	0	2435575..2436096	-	173	42527910	-	TDE2409	-	hypothetical protein
2392	 36.05	0	2436123..2437337	-	404	42527911	-	TDE2410	-	hemolysin
2393	 42.14	0	2437324..2439777	-	817	42527912	glgP	TDE2411	-	glycogen phosphorylase
2394	 31.41	-1	2439885..2440352	-	155	42527913	-	TDE2412	-	acetyltransferase
2395	 34.23	0	2440413..2441078	-	221	42527914	-	TDE2413	-	hypothetical protein
2396	 26.67	-1	2441111..2441710	-	199	42527915	-	TDE2414	-	hypothetical protein
2397	 39.65	0	2441803..2442435	-	210	42527916	-	TDE2415	-	hypothetical protein
2398	 36.94	0	2442446..2442889	-	147	42527917	-	TDE2416	-	hypothetical protein
2399	 39.83	0	2442902..2443378	-	158	42527918	-	TDE2417	-	nitroimidazole resistance protein, putative
2400	 44.84	+1	2443420..2443923	-	167	42527919	-	TDE2418	-	hypothetical protein
2401	 40.43	0	2444113..2444859	-	248	42527920	-	TDE2419	-	hypothetical protein
2402	 44.82	+1	2445050..2449324	-	1424	42527921	-	TDE2420	-	DNA-directed RNA polymerase subunit beta'
2403	 43.29	+1	2449349..2452852	-	1167	42527922	rpoB	TDE2421	-	DNA-directed RNA polymerase subunit beta
2404	 44.87	+1	2453001..2453390	-	129	42527923	rplL	TDE2422	-	50S ribosomal protein L7/L12
2405	 45.47	+1	2453507..2454124	-	205	42527924	rplJ	TDE2423	-	50S ribosomal protein L10
2406	 45.96	+1	2454127..2454807	-	226	42527925	rplA	TDE2424	-	50S ribosomal protein L1
2407	 46.30	+1	2454809..2455240	-	143	42527926	rplK	TDE2425	-	50S ribosomal protein L11
2408	 40.14	0	2455332..2455889	-	185	42527927	nusG	TDE2426	-	transcription antitermination protein NusG
2409	 38.33	0	2455893..2456072	-	59	42527928	secE	TDE2427	-	preprotein translocase subunit SecE
2410	 34.50	0	2456212..2456382	-	56	42527929	rpmG	TDE2428	-	50S ribosomal protein L33
2411	 33.55	0	2456718..2458127	-	469	42527930	-	TDE2429	-	hypothetical protein
2412	 37.28	0	2458124..2459263	-	379	42527931	-	TDE2430	-	bacteriocin ABC transporter, bacteriocin-binding protein, putative
2413	 39.78	0	2459260..2461539	-	759	42527932	-	TDE2431	-	bacteriocin ABC transporter, ATP-binding/permease protein, putative
2414	 42.02	0	2461554..2462624	+	356	42527933	-	TDE2432	-	treponemal membrane protein, putative
2415	 40.46	0	2462624..2463325	+	233	42527934	-	TDE2433	-	treponemal membrane protein, putative
2416	 38.17	0	2463390..2465747	-	785	42527935	-	TDE2434	-	polysaccharide deacetylase family protein
2417	 43.72	+1	2465956..2466552	-	198	42527936	-	TDE2435	-	hypothetical protein
2418	 30.07	-1	2466742..2467506	+	254	42527937	-	TDE2436	-	hypothetical protein
2419	 41.30	0	2467508..2468047	-	179	42527938	-	TDE2437	-	cyclic nucleotide binding domain-containing protein
2420	 40.45	0	2468055..2469347	-	430	42527939	-	TDE2438	-	hypothetical protein
2421	 46.15	+1	2469360..2470451	-	363	42527940	-	TDE2439	-	hypothetical protein
2422	 35.03	0	2470538..2472133	-	531	42527941	-	TDE2440	-	ABC transporter, ATP-binding/permease protein, putative
2423	 36.88	0	2472446..2472586	-	46	42527942	-	TDE2441	-	hypothetical protein
2424	 27.16	-1	2472561..2473256	-	231	42527943	-	TDE2442	-	surface protein, putative
2425	 29.78	-1	2473325..2473549	-	74	42527944	-	TDE2443	-	hypothetical protein
2426	 29.75	-1	2473829..2474302	-	157	42527945	-	TDE2444	-	hypothetical protein
2427	 29.74	-1	2474422..2474727	+	101	42527946	-	TDE2445	-	DNA-binding protein
2428	 44.72	+1	2474864..2476339	-	491	42527947	-	TDE2446	-	malate dehydrogenase
2429	 36.95	0	2476410..2477018	-	202	42527948	aroK	TDE2447	-	shikimate kinase
2430	 37.87	0	2477067..2477507	-	146	42527949	-	TDE2448	-	hypothetical protein
2431	 39.73	0	2477550..2478956	-	468	42527950	-	TDE2449	-	hypothetical protein
2432	 39.31	0	2479045..2479947	+	300	42527951	-	TDE2450	-	ankyrin repeat-containing protein
2433	 43.49	+1	2479972..2481015	+	347	42527952	queA	TDE2451	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
2434	 26.94	-1	2481150..2481446	+	98	42527953	-	TDE2452	-	hypothetical protein
2435	 32.82	0	2481577..2482161	+	194	42527954	-	TDE2453	-	hypothetical protein
2436	 33.92	0	2482441..2483466	-	341	42527955	-	TDE2454	-	hypothetical protein
2437	 38.81	0	2484226..2484663	-	145	42527956	-	TDE2456	-	hypothetical protein
2438	 32.65	0	2484788..2485660	-	290	42527957	-	TDE2457	-	hypothetical protein
2439	 43.59	+1	2485754..2485909	+	51	42527958	-	TDE2458	-	hypothetical protein
2440	 38.01	0	2485854..2486024	-	56	42527959	-	TDE2459	-	hypothetical protein
2441	 44.99	+1	2486123..2487289	+	388	42527960	-	TDE2460	-	aminotransferase, class V
2442	 41.69	0	2487286..2488350	-	354	42527961	selD	TDE2461	-	selenide, water dikinase (selenocysteine-containing)
2443	 31.67	0	2488395..2488514	-	39	42527962	-	TDE2462	-	hypothetical protein
2444	 38.14	0	2488630..2489253	+	207	42527963	-	TDE2463	-	hypothetical protein
2445	 34.69	0	2489283..2489429	+	48	42527964	-	TDE2464	-	hypothetical protein
2446	 36.78	0	2489481..2489741	-	86	42527965	-	TDE2465	-	hypothetical protein
2447	 38.10	0	2489741..2489950	-	69	42527966	-	TDE2466	-	hypothetical protein
2448	 42.76	0	2489971..2491020	-	349	42527967	-	TDE2467	-	hypothetical protein
2449	 32.84	0	2491045..2491245	+	66	42527968	-	TDE2468	-	hypothetical protein
2450	 36.23	0	2491326..2492639	-	437	42527969	-	TDE2469	-	hexokinase family protein
2451	 44.70	+1	2492689..2493858	-	389	42527970	metK	TDE2470	-	S-adenosylmethionine synthetase
2452	 36.57	0	2493954..2495036	-	360	42527971	-	TDE2471	-	hypothetical protein
2453	 34.85	0	2495102..2496286	+	394	42527972	-	TDE2472	-	ISTde1, transposase
2454	 36.67	0	2496438..2496647	+	69	42527973	rpsU	TDE2473	-	30S ribosomal protein S21
2455	 39.19	0	2496692..2497186	-	164	42527974	-	TDE2474	-	acetyltransferase
2456	 40.88	0	2497220..2498611	-	463	42527975	-	TDE2475	-	MATE efflux family protein
2457	 44.73	+1	2498611..2499540	-	309	42527976	arcC	TDE2476	-	carbamate kinase
2458	 44.62	+1	2499663..2501009	+	448	42527977	selA	TDE2477	-	selenocysteine synthase
2459	 44.46	+1	2501013..2502971	+	652	42527978	uvrC	TDE2478	-	excinuclease ABC, C subunit
2460	 37.18	0	2502991..2503380	-	129	42527979	-	TDE2479	-	hypothetical protein
2461	 40.82	0	2503456..2505378	-	640	42527980	htpG	TDE2480	-	heat shock protein 90
2462	 23.81	-2	2505442..2505567	-	41	42527981	-	TDE2481	-	hypothetical protein
2463	 24.64	-2	2505676..2505882	+	68	42527982	-	TDE2482	-	hypothetical protein
2464	 35.77	0	2505970..2506749	-	259	42527983	-	TDE2483	-	hypothetical protein
2465	 38.86	0	2506743..2507810	-	355	42527984	-	TDE2484	-	hypothetical protein
2466	 46.36	+1	2507993..2509213	-	406	42527985	-	TDE2485	-	hypothetical protein
2467	 25.95	-1	2509377..2509931	+	184	42527986	-	TDE2486	-	hypothetical protein
2468	 36.09	0	2509947..2510453	+	168	42527987	-	TDE2487	-	acetyltransferase
2469	 41.82	0	2510485..2511474	-	329	42527988	-	TDE2488	-	HemK family modification methylase
2470	 45.95	+1	2511481..2512566	-	361	42527989	prfA	TDE2489	-	peptide chain release factor 1
2471	 45.03	+1	2512793..2514775	-	660	42527990	priA	TDE2490	-	primosomal protein N'
37.25	MEAN

5.76	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.