IslandPathversion 1.0

IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.25 STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2325	 37.18	0	2380473..2381330	-	285	42527844	cdsA	TDE2343	-	phosphatidate cytidylyltransferase
2326	 39.04	0	2381352..2382035	-	227	42527845	uppS	TDE2344	-	undecaprenyl diphosphate synthase
2327	 39.96	0	2382036..2382593	-	185	42527846	frr	TDE2345	-	ribosome recycling factor
2328	 40.93	0	2382677..2383519	-	280	42527847	tsf	TDE2346	-	elongation factor Ts
2329	 40.75	0	2383593..2384468	-	291	42527848	rpsB	TDE2347	-	30S ribosomal protein S2
2330	 39.22	0	2384698..2385309	-	203	42527849	maf	TDE2348	-	maf protein
2331	 38.16	0	2385326..2386030	-	234	42527850	-	TDE2349	-	hypothetical protein
2332	 37.11	0	2386143..2386751	-	202	42527851	-	TDE2350	-	putative lipoprotein
2333	 33.74	0	2386873..2387364	+	163	42527852	-	TDE2351	-	hypothetical protein
2334	 43.43	+1	2387375..2389246	+	623	42527853	flgK	TDE2352	-	flagellar hook-associated protein FlgK
2335	 45.43	+1	2389269..2390516	+	415	42527854	-	TDE2353	-	flagellar hook-associated protein FlgL
2336	 40.99	0	2390535..2390978	+	147	42527855	-	TDE2354	-	flagellar assembly protein FliW
2337	 39.47	0	2390978..2391205	+	75	42527856	csrA	TDE2355	-	carbon storage regulator
2338	 38.49	0	2391229..2392158	+	309	42527857	-	TDE2356	-	iron compound ABC transporter, periplasmic iron compound-binding protein, putative
2339	 46.04	+1	2392178..2393161	+	327	42527858	-	TDE2357	-	iron compound ABC transporter, permease protein
2340	 33.33	0	2393219..2394226	-	335	42527859	-	TDE2358	-	hypothetical protein
2341	 36.35	0	2394243..2394872	-	209	42527860	-	TDE2359	-	DAK2 domain-containing protein
2342	 38.00	0	2394882..2395889	-	335	42527861	-	TDE2360	-	dihydroxyacetone kinase family protein
2343	 35.06	0	2395899..2397056	-	385	42527862	-	TDE2361	-	high-affinity branched chain amino acid ABC transporter, amino acid-binding protein
2344	 35.10	0	2397053..2397562	-	169	42527863	-	TDE2362	-	hypothetical protein
2345	 35.31	0	2397562..2398269	-	235	42527864	-	TDE2363	-	high-affinity branched chain amino acid ABC transporter, ATP-binding protein
2346	 33.33	0	2398269..2399039	-	256	42527865	-	TDE2364	-	high-affinity branched-chain amino acid ABC transporter, ATP-binding protein
2347	 34.90	0	2399020..2400039	-	339	42527866	-	TDE2365	-	high-affinity branched-chain amino acid ABC transporter, permease protein
2348	 35.33	0	2400049..2400948	-	299	42527867	-	TDE2366	-	high-affinity branched-chain amino acid ABC transporter, permease protein
2349	 32.40	0	2401220..2401864	+	214	42527868	-	TDE2367	-	transcriptional regulator, putative
2350	 43.07	+1	2401870..2402331	+	153	42527869	-	TDE2368	-	YbaK/prolyl-tRNA synthetase domain-containing protein
2351	 38.98	0	2402432..2403529	+	365	42527870	-	TDE2369	-	hypothetical protein
2352	 34.06	0	2403530..2403667	+	45	42527871	-	TDE2370	-	hypothetical protein
2353	 39.81	0	2403723..2404556	+	277	42527872	-	TDE2371	-	iron-sulfur cluster-binding protein
2354	 39.74	0	2404651..2405259	+	202	42527873	-	TDE2372	-	hypothetical protein
2355	 36.33	0	2405263..2405862	+	199	42527874	-	TDE2373	-	precorrin-6Y C5,15-methyltransferase, putative
2356	 37.06	0	2405849..2406412	+	187	42527875	-	TDE2374	-	precorrin-8W decarboxylase, putative
2357	 29.87	-1	2406434..2406751	-	105	42527876	-	TDE2375	-	hypothetical protein
2358	 34.14	0	2406751..2407617	-	288	42527877	-	TDE2376	-	hypothetical protein
2359	 28.26	-1	2407620..2407757	-	45	42527878	-	TDE2377	-	hypothetical protein
2360	 38.23	0	2407859..2408797	+	312	42527879	-	TDE2378	-	ABC transporter, ATP-binding protein, putative
2361	 29.65	-1	2408809..2409948	+	379	42527880	-	TDE2379	-	hypothetical protein
2362	 31.53	0	2409959..2411122	+	387	42527881	-	TDE2380	-	hypothetical protein
2363	 29.94	-1	2411209..2412357	+	382	42527882	-	TDE2381	-	histidine kinase-related ATPase, putative
2364	 36.78	0	2412418..2412969	+	183	42527883	cobU	TDE2382	-	cobinamide kinase/cobinamide phosphate guanyltransferase
2365	 34.99	0	2412966..2413748	+	260	42527884	cobS	TDE2383	-	cobalamin 5'-phosphate synthase
2366	 33.67	0	2413766..2414356	+	196	42527885	-	TDE2384	-	phosphoglycerate mutase family protein
2367	 41.37	0	2414439..2415545	+	368	42527886	-	TDE2385	-	D-alanine--D-alanine ligase
2368	 21.80	-2	2415551..2416183	+	210	42527887	-	TDE2386	-	hypothetical protein
2369	 38.32	0	2416180..2417802	+	540	42527888	malQ	TDE2387	-	4-alpha-glucanotransferase
2370	 39.64	0	2417877..2418479	+	200	42527889	clpP	TDE2388	-	ATP-dependent Clp protease proteolytic subunit
2371	 37.43	0	2418438..2419511	-	357	42527890	cobD	TDE2389	-	cobalamin biosynthesis protein CobD
2372	 36.69	0	2419605..2420648	-	347	42527891	-	TDE2390	-	hypothetical protein
2373	 39.83	0	2420672..2421640	-	322	42527892	-	TDE2391	-	peptidyl-prolyl cis-trans isomerase
2374	 35.69	0	2421763..2422440	-	225	42527893	-	TDE2392	-	hypothetical protein
2375	 33.33	0	2422538..2422648	+	36	42527894	-	TDE2393	-	hypothetical protein
2376	 26.04	-1	2422607..2422702	-	31	42527895	-	TDE2394	-	hypothetical protein
2377	 37.69	0	2422834..2423544	-	236	42527896	-	TDE2395	-	Jag protein, putative
2378	 39.45	0	2423740..2425488	-	582	42527897	-	TDE2396	-	putative inner membrane protein translocase component YidC
2379	 32.58	0	2425523..2425654	-	43	42527898	-	TDE2397	-	hypothetical protein
2380	 37.84	0	2425676..2425897	-	73	42527899	-	TDE2398	-	hypothetical protein
2381	 37.82	0	2425894..2426250	-	118	42527900	rnpA	TDE2399	-	ribonuclease P protein component
2382	 48.08	+1	2426262..2426417	-	51	42527901	rpmH	TDE2400	-	50S ribosomal protein L34
2383	 43.98	+1	2426646..2427782	+	378	42527902	-	TDE2401	-	hypothetical protein
2384	 40.94	0	2427831..2428724	+	297	42527903	-	TDE2402	-	radical SAM domain-containing protein
2385	 43.30	+1	2428731..2429372	-	213	42527904	-	TDE2403	-	metallo-beta-lactamase family protein
2386	 39.80	0	2429403..2430794	-	463	42527905	-	TDE2404	-	RNA polymerase sigma-54 factor, putative
2387	 43.30	+1	2430806..2432140	-	444	42527906	-	TDE2405	-	hypothetical protein
2388	 45.33	+1	2432137..2433603	-	488	42527907	-	TDE2406	-	TldD/PmbA family protein
2389	 47.40	+1	2433734..2435197	-	487	42527908	purF	TDE2407	-	amidophosphoribosyltransferase
2390	 36.84	0	2435307..2435477	-	56	42527909	-	TDE2408	-	hypothetical protein
2391	 38.51	0	2435575..2436096	-	173	42527910	-	TDE2409	-	hypothetical protein
2392	 36.05	0	2436123..2437337	-	404	42527911	-	TDE2410	-	hemolysin
2393	 42.14	0	2437324..2439777	-	817	42527912	glgP	TDE2411	-	glycogen phosphorylase
2394	 31.41	-1	2439885..2440352	-	155	42527913	-	TDE2412	-	acetyltransferase
2395	 34.23	0	2440413..2441078	-	221	42527914	-	TDE2413	-	hypothetical protein
2396	 26.67	-1	2441111..2441710	-	199	42527915	-	TDE2414	-	hypothetical protein
2397	 39.65	0	2441803..2442435	-	210	42527916	-	TDE2415	-	hypothetical protein
2398	 36.94	0	2442446..2442889	-	147	42527917	-	TDE2416	-	hypothetical protein
2399	 39.83	0	2442902..2443378	-	158	42527918	-	TDE2417	-	nitroimidazole resistance protein, putative
2400	 44.84	+1	2443420..2443923	-	167	42527919	-	TDE2418	-	hypothetical protein
2401	 40.43	0	2444113..2444859	-	248	42527920	-	TDE2419	-	hypothetical protein
2402	 44.82	+1	2445050..2449324	-	1424	42527921	-	TDE2420	-	DNA-directed RNA polymerase subunit beta'
2403	 43.29	+1	2449349..2452852	-	1167	42527922	rpoB	TDE2421	-	DNA-directed RNA polymerase subunit beta
2404	 44.87	+1	2453001..2453390	-	129	42527923	rplL	TDE2422	-	50S ribosomal protein L7/L12
2405	 45.47	+1	2453507..2454124	-	205	42527924	rplJ	TDE2423	-	50S ribosomal protein L10
2406	 45.96	+1	2454127..2454807	-	226	42527925	rplA	TDE2424	-	50S ribosomal protein L1
2407	 46.30	+1	2454809..2455240	-	143	42527926	rplK	TDE2425	-	50S ribosomal protein L11
2408	 40.14	0	2455332..2455889	-	185	42527927	nusG	TDE2426	-	transcription antitermination protein NusG
2409	 38.33	0	2455893..2456072	-	59	42527928	secE	TDE2427	-	preprotein translocase subunit SecE
2410	 34.50	0	2456212..2456382	-	56	42527929	rpmG	TDE2428	-	50S ribosomal protein L33
2411	 33.55	0	2456718..2458127	-	469	42527930	-	TDE2429	-	hypothetical protein
2412	 37.28	0	2458124..2459263	-	379	42527931	-	TDE2430	-	bacteriocin ABC transporter, bacteriocin-binding protein, putative
2413	 39.78	0	2459260..2461539	-	759	42527932	-	TDE2431	-	bacteriocin ABC transporter, ATP-binding/permease protein, putative
2414	 42.02	0	2461554..2462624	+	356	42527933	-	TDE2432	-	treponemal membrane protein, putative
2415	 40.46	0	2462624..2463325	+	233	42527934	-	TDE2433	-	treponemal membrane protein, putative
2416	 38.17	0	2463390..2465747	-	785	42527935	-	TDE2434	-	polysaccharide deacetylase family protein
2417	 43.72	+1	2465956..2466552	-	198	42527936	-	TDE2435	-	hypothetical protein
2418	 30.07	-1	2466742..2467506	+	254	42527937	-	TDE2436	-	hypothetical protein
2419	 41.30	0	2467508..2468047	-	179	42527938	-	TDE2437	-	cyclic nucleotide binding domain-containing protein
2420	 40.45	0	2468055..2469347	-	430	42527939	-	TDE2438	-	hypothetical protein
2421	 46.15	+1	2469360..2470451	-	363	42527940	-	TDE2439	-	hypothetical protein
2422	 35.03	0	2470538..2472133	-	531	42527941	-	TDE2440	-	ABC transporter, ATP-binding/permease protein, putative
2423	 36.88	0	2472446..2472586	-	46	42527942	-	TDE2441	-	hypothetical protein
2424	 27.16	-1	2472561..2473256	-	231	42527943	-	TDE2442	-	surface protein, putative
37.25	MEAN

5.76	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.