IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.25   STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2207	 37.98	0	2264883..2265011	+	42	42527726	-	TDE2224	-	hypothetical protein
2208	 40.20	0	2265008..2265415	+	135	42527727	-	TDE2225	-	thioesterase family protein
2209	 40.12	0	2265501..2266472	+	323	42527728	-	TDE2226	-	ABC transporter, substrate-binding protein, putative
2210	 31.36	-1	2266535..2267194	+	219	42527729	-	TDE2227	-	hypothetical protein
2211	 40.18	0	2267377..2268822	-	481	42527730	-	TDE2228	-	aminoacyl-histidine dipeptidase, putative
2212	 32.52	0	2268922..2269167	-	81	42527731	-	TDE2229	-	hypothetical protein
2213	 34.44	0	2269151..2269513	+	120	42527732	-	TDE2230	-	hypothetical protein
2214	 34.55	0	2269778..2270599	+	273	42527733	-	TDE2231	-	internalin-related protein
2215	 37.95	0	2270596..2271375	-	259	42527734	-	TDE2232	-	iron compound ABC transporter, ATP-binding protein, putative
2216	 43.82	+1	2271381..2272400	-	339	42527735	-	TDE2233	-	iron compound ABC transporter, permease protein, putative
2217	 39.42	0	2272400..2273335	-	311	42527736	-	TDE2234	-	iron compound ABC transporter, periplasmic iron compound-binding protein, putative
2218	 44.47	+1	2273440..2274678	-	412	42527737	-	TDE2235	-	methylaspartate ammonia-lyase
2219	 46.78	+1	2274750..2276207	-	485	42527738	glmE	TDE2236	-	methylaspartate mutase, E subunit
2220	 29.52	-1	2276388..2276492	-	34	42527739	-	TDE2237	-	hypothetical protein
2221	 42.64	0	2276477..2276605	+	42	42527740	-	TDE2238	-	hypothetical protein
2222	 50.05	+2	2276644..2277636	-	330	42527741	-	TDE2239	-	hypothetical protein
2223	 42.73	0	2277715..2278512	-	265	42527742	-	TDE2240	-	hypothetical protein
2224	 38.57	0	2278596..2279741	-	381	42527743	-	TDE2241	-	glycosyl transferase, group 2 family protein
2225	 40.92	0	2279659..2282124	-	821	42527744	-	TDE2242	-	antigen, putative
2226	 42.11	0	2282304..2283044	-	246	42527745	-	TDE2243	-	CutC family protein
2227	 35.38	0	2283160..2284380	+	406	42527746	-	TDE2244	-	hypothetical protein
2228	 42.85	0	2284380..2286197	+	605	42527747	-	TDE2245	-	DNA topoisomerase IV subunit B
2229	 39.92	0	2286272..2286514	+	80	42527748	-	TDE2246	-	hypothetical protein
2230	 36.97	0	2286502..2286831	+	109	42527749	-	TDE2247	-	PemK family protein
2231	 42.32	0	2286846..2287568	-	240	42527750	-	TDE2248	-	HesA/MoeB/ThiF family protein
2232	 39.85	0	2287588..2288646	-	352	42527751	mraY	TDE2249	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
2233	 40.03	0	2288708..2289469	+	253	42527752	-	TDE2250	-	hypothetical protein
2234	 42.28	0	2289580..2290842	+	420	42527753	uraA	TDE2251	-	uracil transporter
2235	 32.32	0	2290936..2291133	+	65	42527754	-	TDE2252	-	hypothetical protein
2236	 37.41	0	2291143..2291559	+	138	42527755	-	TDE2253	-	hypothetical protein
2237	 32.83	0	2291535..2291732	-	65	42527756	-	TDE2254	-	hypothetical protein
2238	 32.94	0	2291731..2292243	+	170	42527757	-	TDE2255	-	hypothetical protein
2239	 37.65	0	2292296..2293477	-	393	42527758	-	TDE2256	-	hypothetical protein
2240	 43.70	+1	2293593..2295194	-	533	42527759	-	TDE2257	-	5'-nucleotidase family protein
2241	 45.13	+1	2295424..2296491	-	355	42527760	-	TDE2258	-	surface antigen BspA, putative
2242	 47.12	+1	2296617..2297327	-	236	42527761	-	TDE2259	-	hypothetical protein
2243	 41.03	0	2297478..2297633	+	51	42527762	-	TDE2260	-	hypothetical protein
2244	 39.39	0	2298005..2298103	-	32	42527763	-	TDE2261	-	hypothetical protein
2245	 40.72	0	2298123..2299367	-	414	42527764	-	TDE2262	-	U32 family peptidase
2246	 41.42	0	2299367..2300281	-	304	42527765	-	TDE2263	-	acetyl hydrolase, putative
2247	 37.91	0	2300333..2302123	-	596	42527766	-	TDE2264	-	ABC transporter, ATP-binding/permease protein
2248	 35.90	0	2302305..2302694	+	129	42527767	-	TDE2265	-	hypothetical protein
2249	 32.12	0	2303132..2304118	-	328	42527768	-	TDE2266	-	reverse transcriptase family protein
2250	 32.51	0	2304072..2304554	-	160	42527769	-	TDE2267	-	HRDC domain-containing protein
2251	 56.52	+2	2304912..2305049	-	45	42527770	-	TDE2268	-	hypothetical protein
2252	 46.46	+1	2305021..2306010	-	329	42527771	-	TDE2269	-	hypothetical protein
2253	 41.33	0	2306370..2308469	-	699	42527772	-	TDE2270	-	methyl-accepting chemotaxis protein
2254	 41.71	0	2308571..2309155	-	194	42527773	-	TDE2271	-	HAM1 protein
2255	 32.07	0	2309070..2310098	-	342	42527774	-	TDE2272	-	hypothetical protein
2256	 25.81	-1	2310120..2310212	+	30	42527775	-	TDE2273	-	hypothetical protein
2257	 39.95	0	2310341..2311216	+	291	42527776	-	TDE2274	-	hypothetical protein
2258	 42.50	0	2311216..2312022	+	268	42527777	truA	TDE2275	-	tRNA pseudouridine synthase A
2259	 32.38	0	2312035..2312766	-	243	42527778	-	TDE2276	-	hypothetical protein
2260	 41.27	0	2312820..2313575	+	251	42527779	-	TDE2277	-	Sir2 family transcriptional regulator
2261	 29.17	-1	2313638..2313901	+	87	42527780	-	TDE2278	-	hypothetical protein
2262	 36.75	0	2313871..2315361	+	496	42527781	-	TDE2279	-	HD domain-containing protein
2263	 40.11	0	2315382..2317448	-	688	42527782	-	TDE2280	-	Slt family transglycosylase
2264	 37.99	0	2317510..2318583	-	357	42527783	-	TDE2281	-	LysM domain-containing protein
2265	 39.88	0	2318718..2319755	-	345	42527784	-	TDE2282	-	tRNA synthetase, class II family protein
2266	 42.86	0	2319769..2321007	-	412	42527785	-	TDE2283	-	permease, putative
2267	 39.92	0	2321015..2321986	-	323	42527786	-	TDE2284	-	RND family efflux transporter MFP subunit
2268	 36.66	0	2321987..2323399	-	470	42527787	-	TDE2285	-	hypothetical protein
2269	 41.37	0	2323494..2324339	+	281	42527788	-	TDE2286	-	MazG family protein
2270	 39.87	0	2324399..2325148	-	249	42527789	-	TDE2287	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
2271	 30.43	-1	2325252..2325734	-	160	42527790	-	TDE2288	-	hypothetical protein
2272	 41.38	0	2325904..2327556	+	550	42527791	-	TDE2289	-	phosphoribulokinase/uridine kinase family protein
2273	 42.26	0	2327617..2328243	+	208	42527792	-	TDE2290	-	transcriptional regulator, putative
2274	 39.48	0	2328230..2328961	+	243	42527793	ispD	TDE2291	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2275	 41.15	0	2328958..2329443	+	161	42527794	ispF	TDE2292	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
2276	 39.00	0	2329415..2332660	-	1081	42527795	-	TDE2293	-	hypothetical protein
2277	 37.18	0	2332699..2333400	-	233	42527796	-	TDE2294	-	HAD superfamily hydrolase
2278	 37.93	0	2333474..2334343	+	289	42527797	-	TDE2295	-	mechanosensitive ion channel family protein
2279	 42.00	0	2334373..2336427	-	684	42527798	-	TDE2296	-	hypothetical protein
2280	 38.47	0	2336429..2337109	-	226	42527799	-	TDE2297	-	TPR domain-containing protein
2281	 41.04	0	2337203..2338357	-	384	42527800	-	TDE2298	-	galactokinase, putative
2282	 38.15	0	2338420..2339997	+	525	42527801	lnt	TDE2299	-	apolipoprotein N-acyltransferase
2283	 40.69	0	2340043..2341524	-	493	42527802	-	TDE2300	-	trypsin domain/PDZ domain-containing protein
2284	 38.26	0	2341649..2341912	+	87	42527803	-	TDE2301	-	FlhB domain-containing protein
2285	 39.26	0	2341930..2343195	+	421	42527804	-	TDE2302	-	HD domain-containing protein
2286	 34.35	0	2343195..2343587	+	130	42527805	-	TDE2303	-	hypothetical protein
2287	 37.04	0	2343580..2343795	+	71	42527806	-	TDE2304	-	hypothetical protein
2288	 36.64	0	2343792..2344244	+	150	42527807	-	TDE2305	-	hypothetical protein
2289	 35.09	0	2344228..2344341	-	37	42527808	-	TDE2306	-	hypothetical protein
2290	 44.13	+1	2344325..2345593	-	422	42527809	serS	TDE2307	-	seryl-tRNA synthetase
2291	 37.78	0	2345744..2346373	+	209	42527810	-	TDE2308	-	hypothetical protein
2292	 45.78	+1	2346648..2348189	-	513	42527811	-	TDE2309	-	sigma-54 dependent transcriptional regulator, putative
2293	 51.11	+2	2348182..2348316	+	44	42527812	-	TDE2310	-	hypothetical protein
2294	 28.33	-1	2348378..2348497	+	39	42527813	-	TDE2311	-	hypothetical protein
2295	 36.42	0	2348591..2349109	+	172	42527814	-	TDE2312	-	hypothetical protein
2296	 44.71	+1	2349596..2352100	-	834	42527815	-	TDE2313	-	hypothetical protein
2297	 35.77	0	2352194..2352439	+	81	42527816	-	TDE2314	-	hypothetical protein
2298	 38.29	0	2352412..2353239	+	275	42527817	-	TDE2315	-	hypothetical protein
2299	 39.19	0	2353220..2354038	+	272	42527818	-	TDE2316	-	hypothetical protein
2300	 42.66	0	2354208..2354861	-	217	42527819	hlyIII	TDE2317	-	hemolysin III
2301	 43.72	+1	2355005..2355928	+	307	42527820	-	TDE2318	-	LysM/M23/M37 peptidase
2302	 39.09	0	2355925..2356410	-	161	42527821	-	TDE2319	-	hypothetical protein
2303	 38.01	0	2356400..2357041	-	213	42527822	-	TDE2320	-	RNA polymerase sigma-24 factor, putative
2304	 38.14	0	2357038..2357391	-	117	42527823	-	TDE2321	-	hypothetical protein
2305	 35.64	0	2357424..2357900	-	158	42527824	-	TDE2322	-	flagellar protein FliL-related protein
2306	 40.79	0	2357954..2359174	-	406	42527825	-	TDE2323	-	mechanosensitive ion channel family protein
37.25	MEAN

5.76	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.