IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.25   STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2122	 36.20	0	2171771..2172154	+	127	42527641	-	TDE2138	-	ankyrin repeat-containing protein
2123	 35.11	0	2172172..2172957	+	261	42527642	-	TDE2139	-	hypothetical protein
2124	 40.62	0	2173173..2175230	-	685	42527643	ptrB	TDE2140	-	protease II
2125	 40.86	0	2175673..2175858	-	61	42527644	-	TDE2141	-	hypothetical protein
2126	 42.87	0	2175909..2178047	+	712	42527645	-	TDE2142	-	methyl-accepting chemotaxis protein
2127	 41.17	0	2178247..2180544	+	765	42527646	-	TDE2143	-	penicillin-binding protein
2128	 43.36	+1	2180541..2181836	-	431	42527647	-	TDE2144	-	hypothetical protein
2129	 39.87	0	2181915..2183015	-	366	42527648	-	TDE2145	-	hypothetical protein
2130	 38.91	0	2183200..2184114	+	304	42527649	-	TDE2146	-	alpha/beta fold family hydrolase
2131	 37.45	0	2184126..2184587	-	153	42527650	-	TDE2147	-	putative lipoprotein
2132	 38.30	0	2184687..2186036	-	449	42527651	-	TDE2148	-	OmpA family protein
2133	 37.10	0	2186055..2187383	-	442	42527652	-	TDE2149	-	Slt family transglycosylase
2134	 35.48	0	2187344..2188366	-	340	42527653	-	TDE2150	-	hypothetical protein
2135	 43.38	+1	2188430..2188897	-	155	42527654	-	TDE2151	-	hypothetical protein
2136	 36.00	0	2188894..2189193	-	99	42527655	-	TDE2152	-	hypothetical protein
2137	 41.51	0	2189199..2189663	-	154	42527656	-	TDE2153	-	hypothetical protein
2138	 44.17	+1	2189665..2190024	-	119	42527657	rplT	TDE2154	-	50S ribosomal protein L20
2139	 39.30	0	2190055..2190255	-	66	42527658	rpmI	TDE2155	-	50S ribosomal protein L35
2140	 42.23	0	2190282..2190809	-	175	42527659	infC	TDE2156	-	translation initiation factor IF-3
2141	 38.10	0	2191079..2191792	+	237	42527660	-	TDE2157	-	ABC transporter, permease protein, putative
2142	 36.65	0	2191804..2193312	+	502	42527661	-	TDE2158	-	ABC transporter, ATP-binding protein
2143	 39.44	0	2193329..2193934	+	201	42527662	-	TDE2159	-	hypothetical protein
2144	 34.38	0	2193963..2194058	-	31	42527663	-	TDE2160	-	hypothetical protein
2145	 37.66	0	2194230..2194784	+	184	42527664	-	TDE2161	-	acetyltransferase
2146	 43.43	+1	2194829..2195620	+	263	42527665	-	TDE2162	-	NOL1/NOP2/sun family protein
2147	 42.58	0	2195623..2196303	-	226	42527666	-	TDE2163	-	hypothetical protein
2148	 38.98	0	2196338..2197045	-	235	42527667	-	TDE2164	-	hypothetical protein
2149	 39.97	0	2197143..2197805	-	220	42527668	hypB	TDE2165	-	hydrogenase accessory protein HypB
2150	 41.81	0	2197833..2198174	-	113	42527669	hypA	TDE2166	-	hydrogenase nickel insertion protein HypA
2151	 44.23	+1	2198193..2200937	-	914	42527670	-	TDE2167	-	pyridine nucleotide-disulphide oxidoreductase family protein
2152	 26.36	-1	2200965..2201093	-	42	42527671	-	TDE2168	-	hypothetical protein
2153	 29.52	-1	2201177..2201569	+	130	42527672	-	TDE2169	-	hypothetical protein
2154	 34.72	0	2201696..2201839	-	47	42527673	-	TDE2170	-	hypothetical protein
2155	 30.85	-1	2201867..2202631	-	254	42527674	-	TDE2171	-	hypothetical protein
2156	 29.91	-1	2202742..2202858	-	38	42527675	-	TDE2172	-	hypothetical protein
2157	 28.57	-1	2202827..2203078	-	83	42527676	-	TDE2173	-	hypothetical protein
2158	 45.73	+1	2203189..2204124	-	311	42527677	-	TDE2174	-	hypothetical protein
2159	 28.42	-1	2204228..2204410	-	60	42527678	-	TDE2175	-	hypothetical protein
2160	 36.43	0	2204491..2206329	-	612	42527679	-	TDE2176	-	site-specific recombinase, putative
2161	 42.67	0	2206390..2206614	-	74	42527680	-	TDE2177	-	hypothetical protein
2162	 40.61	0	2206773..2208848	-	691	42527681	-	TDE2178	-	hypothetical protein
2163	 42.41	0	2209088..2210674	+	528	42527682	-	TDE2179	-	voltage-gated chloride channel
2164	 45.67	+1	2210680..2212098	-	472	42527683	trmE	TDE2180	-	tRNA modification GTPase TrmE
2165	 38.52	0	2212085..2213125	-	346	42527684	-	TDE2181	-	PAP2 family protein
2166	 36.18	0	2213125..2215125	-	666	42527685	-	TDE2182	-	hypothetical protein
2167	 36.83	0	2215339..2215995	+	218	42527686	-	TDE2183	-	hypothetical protein
2168	 40.17	0	2216002..2218182	+	726	42527687	-	TDE2184	-	hypothetical protein
2169	 36.55	0	2218192..2219436	+	414	42527688	-	TDE2185	-	putative lipoprotein
2170	 39.67	0	2219488..2221143	+	551	42527689	-	TDE2186	-	AMP-binding enzyme family protein
2171	 39.80	0	2221237..2221638	-	133	42527690	-	TDE2187	-	ParB-like nuclease domain-containing protein
2172	 33.14	0	2221664..2223211	-	515	42527691	-	TDE2188	-	hypothetical protein
2173	 38.38	0	2223288..2224238	-	316	42527692	-	TDE2189	-	M23/M37 peptidase domain-containing protein
2174	 42.33	0	2224251..2226383	-	710	42527693	recJ	TDE2190	-	single-stranded-DNA-specific exonuclease RecJ
2175	 45.12	+1	2226410..2227741	-	443	42527694	pdp	TDE2191	-	pyrimidine-nucleoside phosphorylase
2176	 39.96	0	2227901..2229319	+	472	42527695	-	TDE2192	-	threonine synthase
2177	 46.99	+1	2229353..2229850	-	165	42527696	-	TDE2193	-	deoxycytidylate deaminase, putative
2178	 44.02	+1	2229935..2231122	-	395	42527697	-	TDE2194	-	8-amino-7-oxononanoate synthase, putative
2179	 38.96	0	2231261..2231971	+	236	42527698	-	TDE2195	-	RNA pseudouridylate synthase family protein
2180	 32.55	0	2231973..2232737	-	254	42527699	-	TDE2196	-	hypothetical protein
2181	 36.27	0	2232837..2232938	-	33	42527700	-	TDE2197	-	hypothetical protein
2182	 45.76	+1	2232992..2236597	-	1201	42527701	-	TDE2198	-	pyruvate-ferredoxin oxidoreductase
2183	 33.48	0	2236566..2237240	-	224	42527702	-	TDE2199	-	racemase
2184	 42.54	0	2237340..2238545	-	401	42527703	megL	TDE2200	-	methionine gamma-lyase
2185	 20.45	-2	2238582..2238713	-	43	42527704	-	TDE2201	-	hypothetical protein
2186	 35.58	0	2238774..2239664	+	296	42527705	-	TDE2202	-	membrane protein
2187	 43.16	+1	2241309..2242610	+	433	42527706	-	TDE2204	-	Na+/H+ antiporter family protein
2188	 42.50	0	2242665..2244845	-	726	42527707	-	TDE2205	-	enoate reductase, putative
2189	 43.69	+1	2245011..2245454	-	147	42527708	-	TDE2206	-	hypothetical protein
2190	 41.77	0	2245456..2246724	-	422	42527709	-	TDE2207	-	hypothetical protein
2191	 42.18	0	2246873..2247652	+	259	42527710	-	TDE2208	-	hypothetical protein
2192	 44.49	+1	2247729..2249360	+	543	42527711	-	TDE2209	-	CarB family protein
2193	 41.97	0	2249484..2250791	-	435	42527712	-	TDE2210	-	hypothetical protein
2194	 47.50	+1	2250807..2251406	-	199	42527713	-	TDE2211	-	hypothetical protein
2195	 39.17	0	2251572..2252771	-	399	42527714	galK	TDE2212	-	galactokinase
2196	 35.66	0	2252940..2253197	+	85	42527715	-	TDE2213	-	hypothetical protein
2197	 33.04	0	2253190..2253525	+	111	42527716	-	TDE2214	-	hypothetical protein
2198	 39.76	0	2253531..2255225	-	564	42527717	-	TDE2215	-	galactoside ABC transporter, permease protein, putative
2199	 41.57	0	2255250..2256743	-	497	42527718	mglA	TDE2216	-	galactoside ABC transporter, ATP-binding protein
2200	 43.98	+1	2256854..2258065	-	403	42527719	mglB	TDE2217	-	galactose/glucose-binding lipoprotein
2201	 38.65	0	2258160..2259062	+	300	42527720	-	TDE2218	-	hypothetical protein
2202	 39.68	0	2259051..2260736	-	561	42527721	-	TDE2219	-	hypothetical protein
2203	 43.62	+1	2261025..2262812	+	595	42527722	proS	TDE2220	-	prolyl-tRNA synthetase
2204	 35.56	0	2262824..2263858	+	344	42527723	-	TDE2221	-	hypothetical protein
2205	 41.02	0	2263878..2264762	+	294	42527724	-	TDE2222	-	hypothetical protein
2206	 41.90	0	2264782..2264886	+	34	42527725	-	TDE2223	-	hypothetical protein
2207	 37.98	0	2264883..2265011	+	42	42527726	-	TDE2224	-	hypothetical protein
2208	 40.20	0	2265008..2265415	+	135	42527727	-	TDE2225	-	thioesterase family protein
2209	 40.12	0	2265501..2266472	+	323	42527728	-	TDE2226	-	ABC transporter, substrate-binding protein, putative
2210	 31.36	-1	2266535..2267194	+	219	42527729	-	TDE2227	-	hypothetical protein
2211	 40.18	0	2267377..2268822	-	481	42527730	-	TDE2228	-	aminoacyl-histidine dipeptidase, putative
2212	 32.52	0	2268922..2269167	-	81	42527731	-	TDE2229	-	hypothetical protein
2213	 34.44	0	2269151..2269513	+	120	42527732	-	TDE2230	-	hypothetical protein
2214	 34.55	0	2269778..2270599	+	273	42527733	-	TDE2231	-	internalin-related protein
2215	 37.95	0	2270596..2271375	-	259	42527734	-	TDE2232	-	iron compound ABC transporter, ATP-binding protein, putative
2216	 43.82	+1	2271381..2272400	-	339	42527735	-	TDE2233	-	iron compound ABC transporter, permease protein, putative
2217	 39.42	0	2272400..2273335	-	311	42527736	-	TDE2234	-	iron compound ABC transporter, periplasmic iron compound-binding protein, putative
2218	 44.47	+1	2273440..2274678	-	412	42527737	-	TDE2235	-	methylaspartate ammonia-lyase
2219	 46.78	+1	2274750..2276207	-	485	42527738	glmE	TDE2236	-	methylaspartate mutase, E subunit
2220	 29.52	-1	2276388..2276492	-	34	42527739	-	TDE2237	-	hypothetical protein
2221	 42.64	0	2276477..2276605	+	42	42527740	-	TDE2238	-	hypothetical protein
37.25	MEAN

5.76	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.