IslandPathversion 1.0

IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.25 STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2066	 27.27	-1	2112579..2112677	-	32	42527585	-	TDE2082	-	hypothetical protein
2067	 34.24	0	2112702..2113253	-	183	42527586	-	TDE2083	-	anti-anti-sigma factor
2068	 38.89	0	2113534..2114289	+	251	42527587	-	TDE2084	-	RNA methyltransferase
2069	 42.24	0	2114322..2115017	+	231	42527588	pyrH	TDE2085	-	uridylate kinase
2070	 40.08	0	2115017..2115535	+	172	42527589	-	TDE2086	-	DnaJ domain-containing protein
2071	 40.64	0	2115558..2115776	-	72	42527590	infA	TDE2087	-	translation initiation factor IF-1
2072	 37.78	0	2115884..2116243	+	119	42527591	-	TDE2088	-	C4 zinc finger domain-containing protein
2073	 44.82	+1	2116322..2117653	-	443	42527592	ffh	TDE2089	-	signal recognition particle protein
2074	 43.58	+1	2117653..2118726	-	357	42527593	gpsA	TDE2090	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
2075	 34.65	0	2118853..2119686	+	277	42527594	-	TDE2091	-	amino acid ABC transporter, amino acid-binding protein, putative
2076	 33.69	0	2119703..2120542	+	279	42527595	-	TDE2092	-	amino acid ABC transporter, amino acid-binding protein, putative
2077	 39.51	0	2120560..2121093	-	177	42527596	-	TDE2093	-	hypothetical protein
2078	 33.74	0	2121167..2121409	-	80	42527597	-	TDE2094	-	hypothetical protein
2079	 38.56	0	2121889..2123343	+	484	42527598	-	TDE2095	-	hypothetical protein
2080	 39.44	0	2123340..2124551	+	403	42527599	-	TDE2096	-	hypothetical protein
2081	 40.15	0	2124568..2124831	-	87	42527600	-	TDE2097	-	hypothetical protein
2082	 34.81	0	2125041..2125175	-	44	42527601	-	TDE2098	-	hypothetical protein
2083	 21.14	-2	2125167..2125289	+	40	42527602	-	TDE2099	-	hypothetical protein
2084	 39.02	0	2125510..2125632	+	40	42527603	-	TDE2100	-	hypothetical protein
2085	 46.50	+1	2125639..2126709	-	356	42527604	-	TDE2101	-	hypothetical protein
2086	 42.90	0	2126706..2127437	-	243	42527605	-	TDE2102	-	hypothetical protein
2087	 49.48	+2	2127617..2128483	-	288	42527606	-	TDE2103	-	glycosyl transferase, group 2 family protein
2088	 42.75	0	2128615..2131173	-	852	42527607	-	TDE2104	-	hypothetical protein
2089	 34.05	0	2131296..2131574	-	92	42527608	-	TDE2105	-	hypothetical protein
2090	 33.68	0	2131543..2131830	-	95	42527609	-	TDE2106	-	hypothetical protein
2091	 41.31	0	2131849..2132964	-	371	42527610	-	TDE2107	-	dihydroorotase, putative
2092	 34.85	0	2132992..2133585	-	197	42527611	-	TDE2108	-	hypothetical protein
2093	 44.60	+1	2133665..2135377	-	570	42527612	-	TDE2109	-	DEAD-box ATP dependent DNA helicase
2094	 40.97	0	2135469..2136371	+	300	42527613	pyrF	TDE2110	-	orotidine 5'-phosphate decarboxylase
2095	 31.69	0	2136361..2137275	-	304	42527614	-	TDE2111	-	hypothetical protein
2096	 33.53	0	2137272..2138759	-	495	42527615	-	TDE2112	-	hypothetical protein
2097	 31.59	0	2138756..2139502	-	248	42527616	-	TDE2113	-	hypothetical protein
2098	 32.82	0	2139480..2140265	-	261	42527617	-	TDE2114	-	ABC transporter, ATP-binding protein
2099	 35.80	0	2140270..2144850	-	1526	42527618	-	TDE2115	-	HAMP domain-containing protein
2100	 35.59	0	2144868..2147798	-	976	42527619	-	TDE2116	-	hypothetical protein
2101	 38.60	0	2147946..2149235	+	429	42527620	-	TDE2117	-	hypothetical protein
2102	 43.66	+1	2149244..2151355	-	703	42527621	-	TDE2118	-	DNA topoisomerase IV subunit A
2103	 44.98	+1	2151488..2152783	-	431	42527622	grdB-2	TDE2119	-	glycine reductase complex selenoprotein GrdB2
2104	 45.74	+1	2152795..2154084	-	429	42527623	grdE-2	TDE2120	-	glycine reductase complex proprotein GrdE2
2105	 38.67	0	2154202..2154819	-	205	42527624	-	TDE2121	-	hypothetical protein
2106	 36.62	0	2154816..2156000	-	394	42527625	-	TDE2122	-	DHH superfamily protein
2107	 36.27	0	2156164..2156469	+	101	42527626	-	TDE2123	-	hypothetical protein
2108	 43.47	+1	2156466..2158823	+	785	42527627	clpA	TDE2124	-	ATP-dependent Clp protease, ATP-binding subunit ClpA
2109	 40.62	0	2158851..2159591	+	246	42527628	aat	TDE2125	-	leucyl/phenylalanyl-tRNA--protein transferase
2110	 36.36	0	2159673..2159903	+	76	42527629	-	TDE2126	-	hypothetical protein
2111	 33.08	0	2159903..2160304	+	133	42527630	-	TDE2127	-	vapC protein, putative
2112	 33.18	0	2160329..2161618	+	429	42527631	-	TDE2128	-	hypothetical protein
2113	 32.26	0	2161603..2161695	+	30	42527632	-	TDE2129	-	hypothetical protein
2114	 39.92	0	2161664..2162149	-	161	42527633	-	TDE2130	-	hypothetical protein
2115	 43.10	+1	2162180..2162773	-	197	42527634	-	TDE2131	-	cobalt transport protein CbiM
2116	 41.35	0	2162846..2163631	-	261	42527635	-	TDE2132	-	cobalt ABC transporter, ATP-binding protein, putative
2117	 38.11	0	2163619..2164413	-	264	42527636	-	TDE2133	-	cobalt transport protein, putative
2118	 21.88	-2	2164587..2164682	+	31	42527637	-	TDE2134	-	hypothetical protein
2119	 29.88	-1	2164726..2165478	+	250	42527638	-	TDE2135	-	hypothetical protein
2120	 43.70	+1	2165480..2165749	-	89	42527639	-	TDE2136	-	hypothetical protein
2121	 41.98	0	2166265..2171769	+	1834	42527640	-	TDE2137	-	hypothetical protein
2122	 36.20	0	2171771..2172154	+	127	42527641	-	TDE2138	-	ankyrin repeat-containing protein
2123	 35.11	0	2172172..2172957	+	261	42527642	-	TDE2139	-	hypothetical protein
2124	 40.62	0	2173173..2175230	-	685	42527643	ptrB	TDE2140	-	protease II
2125	 40.86	0	2175673..2175858	-	61	42527644	-	TDE2141	-	hypothetical protein
2126	 42.87	0	2175909..2178047	+	712	42527645	-	TDE2142	-	methyl-accepting chemotaxis protein
2127	 41.17	0	2178247..2180544	+	765	42527646	-	TDE2143	-	penicillin-binding protein
2128	 43.36	+1	2180541..2181836	-	431	42527647	-	TDE2144	-	hypothetical protein
2129	 39.87	0	2181915..2183015	-	366	42527648	-	TDE2145	-	hypothetical protein
2130	 38.91	0	2183200..2184114	+	304	42527649	-	TDE2146	-	alpha/beta fold family hydrolase
2131	 37.45	0	2184126..2184587	-	153	42527650	-	TDE2147	-	putative lipoprotein
2132	 38.30	0	2184687..2186036	-	449	42527651	-	TDE2148	-	OmpA family protein
2133	 37.10	0	2186055..2187383	-	442	42527652	-	TDE2149	-	Slt family transglycosylase
2134	 35.48	0	2187344..2188366	-	340	42527653	-	TDE2150	-	hypothetical protein
2135	 43.38	+1	2188430..2188897	-	155	42527654	-	TDE2151	-	hypothetical protein
2136	 36.00	0	2188894..2189193	-	99	42527655	-	TDE2152	-	hypothetical protein
2137	 41.51	0	2189199..2189663	-	154	42527656	-	TDE2153	-	hypothetical protein
2138	 44.17	+1	2189665..2190024	-	119	42527657	rplT	TDE2154	-	50S ribosomal protein L20
2139	 39.30	0	2190055..2190255	-	66	42527658	rpmI	TDE2155	-	50S ribosomal protein L35
2140	 42.23	0	2190282..2190809	-	175	42527659	infC	TDE2156	-	translation initiation factor IF-3
2141	 38.10	0	2191079..2191792	+	237	42527660	-	TDE2157	-	ABC transporter, permease protein, putative
2142	 36.65	0	2191804..2193312	+	502	42527661	-	TDE2158	-	ABC transporter, ATP-binding protein
2143	 39.44	0	2193329..2193934	+	201	42527662	-	TDE2159	-	hypothetical protein
2144	 34.38	0	2193963..2194058	-	31	42527663	-	TDE2160	-	hypothetical protein
2145	 37.66	0	2194230..2194784	+	184	42527664	-	TDE2161	-	acetyltransferase
2146	 43.43	+1	2194829..2195620	+	263	42527665	-	TDE2162	-	NOL1/NOP2/sun family protein
2147	 42.58	0	2195623..2196303	-	226	42527666	-	TDE2163	-	hypothetical protein
2148	 38.98	0	2196338..2197045	-	235	42527667	-	TDE2164	-	hypothetical protein
2149	 39.97	0	2197143..2197805	-	220	42527668	hypB	TDE2165	-	hydrogenase accessory protein HypB
2150	 41.81	0	2197833..2198174	-	113	42527669	hypA	TDE2166	-	hydrogenase nickel insertion protein HypA
2151	 44.23	+1	2198193..2200937	-	914	42527670	-	TDE2167	-	pyridine nucleotide-disulphide oxidoreductase family protein
2152	 26.36	-1	2200965..2201093	-	42	42527671	-	TDE2168	-	hypothetical protein
2153	 29.52	-1	2201177..2201569	+	130	42527672	-	TDE2169	-	hypothetical protein
2154	 34.72	0	2201696..2201839	-	47	42527673	-	TDE2170	-	hypothetical protein
2155	 30.85	-1	2201867..2202631	-	254	42527674	-	TDE2171	-	hypothetical protein
2156	 29.91	-1	2202742..2202858	-	38	42527675	-	TDE2172	-	hypothetical protein
2157	 28.57	-1	2202827..2203078	-	83	42527676	-	TDE2173	-	hypothetical protein
2158	 45.73	+1	2203189..2204124	-	311	42527677	-	TDE2174	-	hypothetical protein
2159	 28.42	-1	2204228..2204410	-	60	42527678	-	TDE2175	-	hypothetical protein
2160	 36.43	0	2204491..2206329	-	612	42527679	-	TDE2176	-	site-specific recombinase, putative
2161	 42.67	0	2206390..2206614	-	74	42527680	-	TDE2177	-	hypothetical protein
2162	 40.61	0	2206773..2208848	-	691	42527681	-	TDE2178	-	hypothetical protein
2163	 42.41	0	2209088..2210674	+	528	42527682	-	TDE2179	-	voltage-gated chloride channel
2164	 45.67	+1	2210680..2212098	-	472	42527683	trmE	TDE2180	-	tRNA modification GTPase TrmE
2165	 38.52	0	2212085..2213125	-	346	42527684	-	TDE2181	-	PAP2 family protein
37.25	MEAN

5.76	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.