IslandPathversion 1.0

IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.25 STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1947	 30.52	-1	1974640..1975065	-	141	42527466	-	TDE1961	-	PilT domain-containing protein
1948	 33.73	0	1975043..1975294	-	83	42527467	-	TDE1962	-	hypothetical protein
1949	 42.30	0	1975429..1977201	+	590	42527468	selB	TDE1963	-	selenocysteine-specific translation elongation factor
1950	 41.03	0	1977221..1978870	-	549	42527469	-	TDE1964	-	Na/Pi cotransporter family protein
1951	 43.44	+1	1978985..1980241	-	418	42527470	-	TDE1965	-	sodium/hydrogen exchanger family protein
1952	 41.94	0	1980413..1981690	+	425	42527471	htrA-1	TDE1966	-	trypsin domain/PDZ domain-containing protein
1953	 36.23	0	1981697..1982593	+	298	42527472	-	TDE1967	-	hypothetical protein
1954	 40.67	0	1982583..1983182	-	199	42527473	ftsJ	TDE1968	-	cell division protein FtsJ
1955	 40.44	0	1983169..1984590	-	473	42527474	-	TDE1969	-	sigma-54 dependent transcriptional regulator/response regulator
1956	 36.70	0	1984587..1985834	-	415	42527475	-	TDE1970	-	sensory box histidine kinase
1957	 39.15	0	1985831..1987120	-	429	42527476	-	TDE1971	-	DNA polymerase III domain-containing protein
1958	 35.77	0	1987192..1987314	-	40	42527477	-	TDE1972	-	hypothetical protein
1959	 33.12	0	1987329..1987796	-	155	42527478	-	TDE1973	-	CvpA family protein
1960	 41.58	0	1987825..1989000	-	391	42527479	murG	TDE1974	-	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
1961	 27.78	-1	1989009..1989116	+	35	42527480	-	TDE1975	-	hypothetical protein
1962	 34.61	0	1989255..1990118	+	287	42527481	-	TDE1976	-	hypothetical protein
1963	 39.29	0	1990218..1991408	+	396	42527482	-	TDE1977	-	hypothetical protein
1964	 39.15	0	1991591..1991848	-	85	42527483	-	TDE1978	-	hypothetical protein
1965	 45.45	+1	1991845..1992075	-	76	42527484	-	TDE1979	-	hypothetical protein
1966	 35.29	0	1992050..1992151	-	33	42527485	-	TDE1980	-	hypothetical protein
1967	 33.92	0	1992156..1992497	+	113	42527486	-	TDE1981	-	hypothetical protein
1968	 39.45	0	1992601..1993074	-	157	42527487	-	TDE1982	-	hypothetical protein
1969	 42.31	0	1993466..1996429	-	987	42527488	-	TDE1983	-	hypothetical protein
1970	 35.73	0	1996444..1997655	-	403	42527489	-	TDE1984	-	hypothetical protein
1971	 39.46	0	1997645..2000419	-	924	42527490	-	TDE1985	-	hypothetical protein
1972	 41.81	0	2000373..2002283	-	636	42527491	-	TDE1986	-	adenylate cyclase, putative
1973	 43.31	+1	2002452..2002862	+	136	42527492	-	TDE1987	-	hypothetical protein
1974	 36.80	0	2002879..2005650	+	923	42527493	-	TDE1988	-	hypothetical protein
1975	 42.82	0	2005675..2006433	-	252	42527494	-	TDE1989	-	acyltransferase family protein
1976	 39.95	0	2006457..2008586	-	709	42527495	-	TDE1990	-	ATP-dependent helicase DinG
1977	 29.28	-1	2008724..2009488	-	254	42527496	-	TDE1991	-	hypothetical protein
1978	 39.74	0	2009604..2010962	+	452	42527497	-	TDE1992	-	OmpA family protein
1979	 42.82	0	2011007..2012398	-	463	42527498	aspA	TDE1993	-	aspartate ammonia-lyase
1980	 25.00	-2	2012432..2012539	-	35	42527499	-	TDE1994	-	hypothetical protein
1981	 47.38	+1	2012604..2014304	+	566	42527500	-	TDE1995	-	magnesium chelatase family protein
1982	 37.08	0	2014383..2014943	+	186	42527501	-	TDE1996	-	hypothetical protein
1983	 34.12	0	2014936..2015316	+	126	42527502	-	TDE1997	-	hypothetical protein
1984	 42.86	0	2015440..2017203	+	587	42527503	-	TDE1998	-	phosphohexose mutase family protein
1985	 43.73	+1	2017203..2017856	+	217	42527504	-	TDE1999	-	DNA polymerase III domain-containing protein
1986	 33.39	0	2017999..2019699	+	566	42527505	-	TDE2000	-	ABC transporter ATP-binding protein/peptidase
1987	 40.36	0	2019865..2021658	-	597	42527506	-	TDE2001	-	oligoendopeptidase F, putative
1988	 34.17	0	2021689..2022285	-	198	42527507	-	TDE2002	-	hypothetical protein
1989	 50.82	+2	2022417..2023691	+	424	42527508	-	TDE2003	-	internalin-related protein
1990	 34.72	0	2023762..2023905	+	47	42527509	-	TDE2004	-	hypothetical protein
1991	 38.92	0	2023916..2024470	+	184	42527510	-	TDE2005	-	hypothetical protein
1992	 37.89	0	2024561..2026930	+	789	42527511	-	TDE2006	-	hypothetical protein
1993	 46.53	+1	2026959..2028701	+	580	42527512	-	TDE2007	-	ABC transporter, ATP-binding/permease protein
1994	 43.52	+1	2028718..2030475	+	585	42527513	-	TDE2008	-	ABC transporter, ATP-binding/permease protein
1995	 36.64	0	2030522..2031307	+	261	42527514	-	TDE2009	-	hypothetical protein
1996	 39.15	0	2031458..2031973	+	171	42527515	-	TDE2010	-	hypothetical protein
1997	 43.11	+1	2032070..2033542	+	490	42527516	-	TDE2011	-	hypothetical protein
1998	 23.91	-2	2033890..2034441	-	183	42527517	-	TDE2012	-	hypothetical protein
1999	 30.75	-1	2034449..2034796	-	115	42527518	-	TDE2013	-	hypothetical protein
2000	 32.02	0	2035525..2036511	-	328	42527519	-	TDE2014	-	ankyrin repeat-containing protein
2001	 26.29	-1	2036501..2037622	-	373	42527520	-	TDE2015	-	putative lipoprotein
2002	 29.69	-1	2037914..2038984	-	356	42527521	-	TDE2016	-	hypothetical protein
2003	 23.20	-2	2039113..2039487	-	124	42527522	-	TDE2017	-	hypothetical protein
2004	 25.34	-2	2039678..2040640	-	320	42527523	-	TDE2018	-	putative lipoprotein
2005	 34.55	0	2040564..2040809	-	81	42527524	-	TDE2019	-	hypothetical protein
2006	 38.65	0	2040824..2044246	-	1140	42527525	-	TDE2020	-	YD repeat-containing protein
2007	 25.54	-2	2044247..2044849	-	200	42527526	-	TDE2021	-	hypothetical protein
2008	 38.50	0	2044846..2049312	-	1488	42527527	-	TDE2022	-	YD repeat-containing protein
2009	 26.49	-1	2049595..2050704	-	369	42527528	-	TDE2023	-	TPR domain-containing protein
2010	 27.49	-1	2050701..2051111	-	136	42527529	-	TDE2024	-	hypothetical protein
2011	 42.90	0	2051165..2051530	-	121	42527530	-	TDE2025	-	hypothetical protein
2012	 24.53	-2	2051582..2052592	-	336	42527531	-	TDE2026	-	hypothetical protein
2013	 28.15	-1	2052789..2053058	+	89	42527532	-	TDE2027	-	hypothetical protein
2014	 43.34	+1	2053063..2057079	+	1338	42527533	-	TDE2028	-	OmpA family protein
2015	 42.22	0	2057238..2058092	-	284	42527534	-	TDE2029	-	TatD family hydrolase
2016	 39.57	0	2058394..2059179	+	261	42527535	-	TDE2030	-	RlpA family lipoprotein
2017	 32.26	0	2059159..2059251	-	30	42527536	-	TDE2031	-	hypothetical protein
2018	 36.84	0	2059261..2060259	-	332	42527537	-	TDE2032	-	hypothetical protein
2019	 34.85	0	2060382..2061566	-	394	42527538	-	TDE2033	-	ISTde1, transposase
2020	 31.17	-1	2061726..2062883	+	385	42527539	-	TDE2034	-	glycosyl transferase, group 1 family protein
2021	 39.37	0	2062941..2064215	+	424	42527540	glgC	TDE2035	-	glucose-1-phosphate adenylyltransferase
2022	 38.06	0	2064230..2066728	-	832	42527541	-	TDE2036	-	AAA family ATPase
2023	 36.13	0	2066737..2067810	-	357	42527542	-	TDE2037	-	ATP:guanido phosphotransferase domain-containing protein
2024	 34.34	0	2067794..2068291	-	165	42527543	-	TDE2038	-	UVR domain-containing protein
2025	 38.68	0	2068288..2069634	-	448	42527544	-	TDE2039	-	lipoprotein releasing system, permease protein, putative
2026	 38.18	0	2069631..2070311	-	226	42527545	lolD	TDE2040	-	lipoprotein releasing system, ATP-binding protein
2027	 35.83	0	2070304..2071584	-	426	42527546	-	TDE2041	-	lipoprotein releasing system, permease protein, putative
2028	 30.99	-1	2071586..2072269	-	227	42527547	-	TDE2042	-	hypothetical protein
2029	 39.70	0	2072270..2073148	-	292	42527548	ftsY	TDE2043	-	signal recognition particle-docking protein FtsY
2030	 32.19	0	2073138..2074706	-	522	42527549	-	TDE2044	-	putative lipoprotein
2031	 35.83	0	2074703..2075023	-	106	42527550	-	TDE2045	-	hypothetical protein
2032	 43.20	+1	2076148..2076441	-	97	42527551	-	TDE2047	-	hypothetical protein
2033	 35.19	0	2076551..2077954	+	467	42527552	-	TDE2048	-	hypothetical protein
2034	 38.17	0	2078005..2079597	+	530	42527553	-	TDE2049	-	solute-binding family 5 protein
2035	 42.74	0	2079797..2080030	-	77	42527554	-	TDE2050	-	hypothetical protein
2036	 37.86	0	2080080..2080388	-	102	42527555	-	TDE2051	-	hypothetical protein
2037	 40.15	0	2080542..2081744	+	400	42527556	-	TDE2052	-	aminotransferase, class V
2038	 39.08	0	2081779..2082213	+	144	42527557	-	TDE2053	-	NifU domain-containing protein
2039	 37.17	0	2082276..2082614	-	112	42527558	-	TDE2054	-	hypothetical protein
2040	 38.12	0	2082648..2083859	-	403	42527559	hbpB	TDE2055	-	hemin-binding protein B
2041	 38.61	0	2083949..2085160	-	403	42527560	-	TDE2056	-	outer membrane hemin-binding protein A
2042	 45.16	+1	2085248..2085433	-	61	42527561	-	TDE2057	-	hypothetical protein
2043	 40.90	0	2085444..2086262	-	272	42527562	-	TDE2058	-	hypothetical protein
2044	 33.33	0	2086399..2086599	-	66	42527563	-	TDE2059	-	hypothetical protein
2045	 34.16	0	2086661..2086903	+	80	42527564	-	TDE2060	-	hypothetical protein
2046	 43.10	+1	2086869..2087882	-	337	42527565	-	TDE2061	-	hypothetical protein
37.25	MEAN

5.76	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.