IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.25   STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1898	 40.28	0	1929316..1929948	+	210	42527417	-	TDE1912	-	redox-sensing transcriptional repressor Rex
1899	 35.81	0	1929950..1930957	+	335	42527418	-	TDE1913	-	hypothetical protein
1900	 51.65	+2	1930979..1932010	-	343	42527419	ruvB	TDE1914	-	Holliday junction DNA helicase B
1901	 43.71	+1	1932018..1933193	-	391	42527420	-	TDE1915	-	alcohol dehydrogenase, iron-containing
1902	 44.74	+1	1933367..1934857	-	496	42527421	glpK	TDE1916	-	glycerol kinase
1903	 39.72	0	1934854..1937484	-	876	42527422	-	TDE1917	-	cytidyltransferase-like protein
1904	 35.95	0	1937481..1938434	-	317	42527423	-	TDE1918	-	hypothetical protein
1905	 37.02	0	1938409..1939980	-	523	42527424	-	TDE1919	-	hypothetical protein
1906	 37.50	0	1940008..1940367	-	119	42527425	-	TDE1920	-	putative lipoprotein
1907	 34.31	0	1940409..1940819	-	136	42527426	-	TDE1921	-	hypothetical protein
1908	 33.86	0	1941003..1941575	-	190	42527427	-	TDE1922	-	hypothetical protein
1909	 33.89	0	1941603..1941782	-	59	42527428	-	TDE1923	-	hypothetical protein
1910	 27.23	-1	1941764..1941976	-	70	42527429	-	TDE1924	-	hypothetical protein
1911	 44.32	+1	1942120..1942665	+	181	42527430	-	TDE1925	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
1912	 37.37	0	1942635..1943723	+	362	42527431	-	TDE1926	-	hypothetical protein
1913	 42.62	0	1944124..1945878	+	584	42527432	pheT	TDE1927	-	phenylalanyl-tRNA synthetase subunit beta
1914	 36.77	0	1945888..1946643	+	251	42527433	-	TDE1928	-	hypothetical protein
1915	 35.31	0	1946664..1947521	-	285	42527434	-	TDE1929	-	hypothetical protein
1916	 38.22	0	1947522..1948646	-	374	42527435	-	TDE1930	-	hypothetical protein
1917	 45.50	+1	1948670..1949080	+	136	42527436	cdd	TDE1931	-	cytidine deaminase
1918	 48.03	+1	1949221..1949499	-	92	42527437	-	TDE1932	-	hypothetical protein
1919	 46.61	+1	1949690..1952701	-	1003	42527438	-	TDE1933	-	hypothetical protein
1920	 38.74	0	1952754..1952864	+	36	42527439	-	TDE1934	-	hypothetical protein
1921	 34.41	0	1953134..1953226	+	30	42527440	-	TDE1935	-	hypothetical protein
1922	 37.04	0	1953226..1953414	+	62	42527441	-	TDE1936	-	hypothetical protein
1923	 35.24	0	1953404..1953508	+	34	42527442	-	TDE1937	-	hypothetical protein
1924	 37.25	0	1953780..1954646	+	288	42527443	-	TDE1938	-	hypothetical protein
1925	 40.60	0	1954767..1955495	+	242	42527444	-	TDE1939	-	hypothetical protein
1926	 39.72	0	1955534..1956598	-	354	42527445	-	TDE1940	-	hypothetical protein
1927	 37.83	0	1956595..1959375	-	926	42527446	-	TDE1941	-	hypothetical protein
1928	 33.33	0	1959397..1959498	+	33	42527447	-	TDE1942	-	hypothetical protein
1929	 39.77	0	1959526..1960146	-	206	42527448	rpsD	TDE1943	-	30S ribosomal protein S4
1930	 34.77	0	1960574..1961131	+	185	42527449	-	TDE1944	-	hypothetical protein
1931	 35.47	0	1961209..1961535	-	108	42527450	-	TDE1945	-	hypothetical protein
1932	 38.45	0	1961550..1962584	-	344	42527451	-	TDE1946	-	hypothetical protein
1933	 44.69	+1	1962607..1963539	-	310	42527452	-	TDE1947	-	ABC transporter, permease protein
1934	 41.07	0	1963544..1964641	-	365	42527453	-	TDE1948	-	ABC transporter, permease protein
1935	 41.08	0	1964634..1966157	-	507	42527454	-	TDE1949	-	ABC transporter, ATP-binding protein
1936	 40.22	0	1966281..1967354	-	357	42527455	-	TDE1950	-	membrane lipoprotein TmpC, putative
1937	 43.47	+1	1967493..1968419	-	308	42527456	-	TDE1951	-	ribonuclease Z
1938	 43.93	+1	1968486..1969136	-	216	42527457	-	TDE1952	-	hypothetical protein
1939	 39.41	0	1969120..1969761	-	213	42527458	-	TDE1953	-	TetR family transcriptional regulator
1940	 32.94	0	1969926..1970180	+	84	42527459	-	TDE1954	-	prevent-host-death family protein
1941	 29.82	-1	1970280..1970990	-	236	42527460	-	TDE1955	-	hypothetical protein
1942	 28.04	-1	1971254..1971442	+	62	42527461	-	TDE1956	-	hypothetical protein
1943	 26.81	-1	1971589..1972293	+	234	42527462	-	TDE1957	-	hypothetical protein
1944	 37.33	0	1972399..1973775	-	458	42527463	-	TDE1958	-	surface protein, putative
1945	 37.40	0	1973895..1974287	-	130	42527464	-	TDE1959	-	hypothetical protein
1946	 33.85	0	1974438..1974629	+	63	42527465	-	TDE1960	-	hypothetical protein
1947	 30.52	-1	1974640..1975065	-	141	42527466	-	TDE1961	-	PilT domain-containing protein
1948	 33.73	0	1975043..1975294	-	83	42527467	-	TDE1962	-	hypothetical protein
1949	 42.30	0	1975429..1977201	+	590	42527468	selB	TDE1963	-	selenocysteine-specific translation elongation factor
1950	 41.03	0	1977221..1978870	-	549	42527469	-	TDE1964	-	Na/Pi cotransporter family protein
1951	 43.44	+1	1978985..1980241	-	418	42527470	-	TDE1965	-	sodium/hydrogen exchanger family protein
1952	 41.94	0	1980413..1981690	+	425	42527471	htrA-1	TDE1966	-	trypsin domain/PDZ domain-containing protein
1953	 36.23	0	1981697..1982593	+	298	42527472	-	TDE1967	-	hypothetical protein
1954	 40.67	0	1982583..1983182	-	199	42527473	ftsJ	TDE1968	-	cell division protein FtsJ
1955	 40.44	0	1983169..1984590	-	473	42527474	-	TDE1969	-	sigma-54 dependent transcriptional regulator/response regulator
1956	 36.70	0	1984587..1985834	-	415	42527475	-	TDE1970	-	sensory box histidine kinase
1957	 39.15	0	1985831..1987120	-	429	42527476	-	TDE1971	-	DNA polymerase III domain-containing protein
1958	 35.77	0	1987192..1987314	-	40	42527477	-	TDE1972	-	hypothetical protein
1959	 33.12	0	1987329..1987796	-	155	42527478	-	TDE1973	-	CvpA family protein
1960	 41.58	0	1987825..1989000	-	391	42527479	murG	TDE1974	-	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
1961	 27.78	-1	1989009..1989116	+	35	42527480	-	TDE1975	-	hypothetical protein
1962	 34.61	0	1989255..1990118	+	287	42527481	-	TDE1976	-	hypothetical protein
1963	 39.29	0	1990218..1991408	+	396	42527482	-	TDE1977	-	hypothetical protein
1964	 39.15	0	1991591..1991848	-	85	42527483	-	TDE1978	-	hypothetical protein
1965	 45.45	+1	1991845..1992075	-	76	42527484	-	TDE1979	-	hypothetical protein
1966	 35.29	0	1992050..1992151	-	33	42527485	-	TDE1980	-	hypothetical protein
1967	 33.92	0	1992156..1992497	+	113	42527486	-	TDE1981	-	hypothetical protein
1968	 39.45	0	1992601..1993074	-	157	42527487	-	TDE1982	-	hypothetical protein
1969	 42.31	0	1993466..1996429	-	987	42527488	-	TDE1983	-	hypothetical protein
1970	 35.73	0	1996444..1997655	-	403	42527489	-	TDE1984	-	hypothetical protein
1971	 39.46	0	1997645..2000419	-	924	42527490	-	TDE1985	-	hypothetical protein
1972	 41.81	0	2000373..2002283	-	636	42527491	-	TDE1986	-	adenylate cyclase, putative
1973	 43.31	+1	2002452..2002862	+	136	42527492	-	TDE1987	-	hypothetical protein
1974	 36.80	0	2002879..2005650	+	923	42527493	-	TDE1988	-	hypothetical protein
1975	 42.82	0	2005675..2006433	-	252	42527494	-	TDE1989	-	acyltransferase family protein
1976	 39.95	0	2006457..2008586	-	709	42527495	-	TDE1990	-	ATP-dependent helicase DinG
1977	 29.28	-1	2008724..2009488	-	254	42527496	-	TDE1991	-	hypothetical protein
1978	 39.74	0	2009604..2010962	+	452	42527497	-	TDE1992	-	OmpA family protein
1979	 42.82	0	2011007..2012398	-	463	42527498	aspA	TDE1993	-	aspartate ammonia-lyase
1980	 25.00	-2	2012432..2012539	-	35	42527499	-	TDE1994	-	hypothetical protein
1981	 47.38	+1	2012604..2014304	+	566	42527500	-	TDE1995	-	magnesium chelatase family protein
1982	 37.08	0	2014383..2014943	+	186	42527501	-	TDE1996	-	hypothetical protein
1983	 34.12	0	2014936..2015316	+	126	42527502	-	TDE1997	-	hypothetical protein
1984	 42.86	0	2015440..2017203	+	587	42527503	-	TDE1998	-	phosphohexose mutase family protein
1985	 43.73	+1	2017203..2017856	+	217	42527504	-	TDE1999	-	DNA polymerase III domain-containing protein
1986	 33.39	0	2017999..2019699	+	566	42527505	-	TDE2000	-	ABC transporter ATP-binding protein/peptidase
1987	 40.36	0	2019865..2021658	-	597	42527506	-	TDE2001	-	oligoendopeptidase F, putative
1988	 34.17	0	2021689..2022285	-	198	42527507	-	TDE2002	-	hypothetical protein
1989	 50.82	+2	2022417..2023691	+	424	42527508	-	TDE2003	-	internalin-related protein
1990	 34.72	0	2023762..2023905	+	47	42527509	-	TDE2004	-	hypothetical protein
1991	 38.92	0	2023916..2024470	+	184	42527510	-	TDE2005	-	hypothetical protein
1992	 37.89	0	2024561..2026930	+	789	42527511	-	TDE2006	-	hypothetical protein
1993	 46.53	+1	2026959..2028701	+	580	42527512	-	TDE2007	-	ABC transporter, ATP-binding/permease protein
1994	 43.52	+1	2028718..2030475	+	585	42527513	-	TDE2008	-	ABC transporter, ATP-binding/permease protein
1995	 36.64	0	2030522..2031307	+	261	42527514	-	TDE2009	-	hypothetical protein
1996	 39.15	0	2031458..2031973	+	171	42527515	-	TDE2010	-	hypothetical protein
1997	 43.11	+1	2032070..2033542	+	490	42527516	-	TDE2011	-	hypothetical protein
37.25	MEAN

5.76	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.