IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.25   STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1853	 35.42	0	1892349..1892444	-	31	42527372	-	TDE1866	-	hypothetical protein
1854	 24.85	-2	1892441..1892605	-	54	42527373	-	TDE1867	-	hypothetical protein
1855	 22.86	-2	1892586..1892690	+	34	42527374	-	TDE1868	-	hypothetical protein
1856	 26.83	-1	1892637..1892759	-	40	42527375	-	TDE1869	-	hypothetical protein
1857	 26.28	-1	1892746..1893582	-	278	42527376	-	TDE1870	-	CAAX amino terminal protease family protein
1858	 18.35	-2	1893752..1894612	-	286	42527377	-	TDE1871	-	hypothetical protein
1859	 22.76	-2	1894659..1894781	-	40	42527378	-	TDE1872	-	hypothetical protein
1860	 19.72	-2	1894819..1895685	-	288	42527379	-	TDE1873	-	hypothetical protein
1861	 20.33	-2	1895730..1895852	-	40	42527380	-	TDE1874	-	hypothetical protein
1862	 33.33	0	1895896..1896996	-	366	42527381	-	TDE1875	-	hypothetical protein
1863	 38.87	0	1897029..1897769	-	246	42527382	-	TDE1876	-	WecB/TagA/CpsF family glycosyl transferase
1864	 40.18	0	1897750..1898523	-	257	42527383	-	TDE1877	-	hypothetical protein
1865	 39.69	0	1900050..1900835	-	261	42527384	-	TDE1878	-	HAD superfamily hydrolase
1866	 31.31	-1	1902675..1903118	+	147	42527385	-	TDE1880	-	hypothetical protein
1867	 39.67	0	1903140..1903691	+	183	42527386	-	TDE1881	-	methyltransferase, putative
1868	 39.49	0	1903684..1904967	+	427	42527387	-	TDE1882	-	glycosy hydrolase family protein
1869	 40.41	0	1905000..1905932	-	310	42527388	-	TDE1883	-	hypothetical protein
1870	 35.98	0	1905964..1906947	-	327	42527389	-	TDE1884	-	hypothetical protein
1871	 34.29	0	1906997..1907206	+	69	42527390	-	TDE1885	-	hypothetical protein
1872	 39.02	0	1907172..1908578	-	468	42527391	-	TDE1886	-	MiaB-like tRNA modifying enzyme
1873	 39.41	0	1908582..1909223	-	213	42527392	-	TDE1887	-	TPR domain-containing protein
1874	 40.74	0	1909213..1909590	-	125	42527393	-	TDE1888	-	hypothetical protein
1875	 38.30	0	1909590..1910978	-	462	42527394	brnQ	TDE1889	-	branched-chain amino acid transport system II carrier protein
1876	 30.43	-1	1911152..1911289	+	45	42527395	-	TDE1890	-	hypothetical protein
1877	 33.07	0	1911346..1912110	+	254	42527396	-	TDE1891	-	hypothetical protein
1878	 55.91	+2	1912205..1912297	+	30	42527397	-	TDE1892	-	hypothetical protein
1879	 44.46	+1	1912302..1914107	-	601	42527398	lepA	TDE1893	-	GTP-binding protein LepA
1880	 46.88	+1	1914253..1915101	+	282	42527399	-	TDE1894	-	ferredoxin
1881	 42.26	0	1915103..1915987	+	294	42527400	era	TDE1895	-	GTP-binding protein Era
1882	 46.19	+1	1915994..1917595	-	533	42527401	purH	TDE1896	-	phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
1883	 42.05	0	1917615..1918199	-	194	42527402	purN	TDE1897	-	phosphoribosylglycinamide formyltransferase
1884	 43.05	+1	1918212..1920980	-	922	42527403	secA	TDE1898	-	preprotein translocase subunit SecA
1885	 27.21	-1	1921032..1921178	-	48	42527404	-	TDE1899	-	hypothetical protein
1886	 36.47	0	1921264..1921518	+	84	42527405	-	TDE1900	-	hypothetical protein
1887	 34.39	0	1921531..1922379	+	282	42527406	-	TDE1901	-	ABC transporter, ATP-binding protein
1888	 25.25	-2	1922467..1922565	-	32	42527407	-	TDE1902	-	hypothetical protein
1889	 26.76	-1	1922557..1923195	+	212	42527408	-	TDE1903	-	hypothetical protein
1890	 36.69	0	1923287..1923703	-	138	42527409	-	TDE1904	-	hypothetical protein
1891	 33.33	0	1923812..1923967	-	51	42527410	-	TDE1905	-	hypothetical protein
1892	 30.98	-1	1924023..1924787	+	254	42527411	-	TDE1906	-	hypothetical protein
1893	 45.70	+1	1924816..1925187	-	123	42527412	acpS	TDE1907	-	holo-(acyl-carrier-protein) synthase
1894	 39.48	0	1925189..1926148	-	319	42527413	-	TDE1908	-	hypothetical protein
1895	 40.12	0	1926138..1926962	-	274	42527414	-	TDE1909	-	hypothetical protein
1896	 42.10	0	1926966..1928927	-	653	42527415	dxs	TDE1910	-	1-deoxy-D-xylulose-5-phosphate synthase
1897	 32.05	0	1929033..1929188	-	51	42527416	-	TDE1911	-	hypothetical protein
1898	 40.28	0	1929316..1929948	+	210	42527417	-	TDE1912	-	redox-sensing transcriptional repressor Rex
1899	 35.81	0	1929950..1930957	+	335	42527418	-	TDE1913	-	hypothetical protein
1900	 51.65	+2	1930979..1932010	-	343	42527419	ruvB	TDE1914	-	Holliday junction DNA helicase B
1901	 43.71	+1	1932018..1933193	-	391	42527420	-	TDE1915	-	alcohol dehydrogenase, iron-containing
1902	 44.74	+1	1933367..1934857	-	496	42527421	glpK	TDE1916	-	glycerol kinase
1903	 39.72	0	1934854..1937484	-	876	42527422	-	TDE1917	-	cytidyltransferase-like protein
1904	 35.95	0	1937481..1938434	-	317	42527423	-	TDE1918	-	hypothetical protein
1905	 37.02	0	1938409..1939980	-	523	42527424	-	TDE1919	-	hypothetical protein
1906	 37.50	0	1940008..1940367	-	119	42527425	-	TDE1920	-	putative lipoprotein
1907	 34.31	0	1940409..1940819	-	136	42527426	-	TDE1921	-	hypothetical protein
1908	 33.86	0	1941003..1941575	-	190	42527427	-	TDE1922	-	hypothetical protein
1909	 33.89	0	1941603..1941782	-	59	42527428	-	TDE1923	-	hypothetical protein
1910	 27.23	-1	1941764..1941976	-	70	42527429	-	TDE1924	-	hypothetical protein
1911	 44.32	+1	1942120..1942665	+	181	42527430	-	TDE1925	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
1912	 37.37	0	1942635..1943723	+	362	42527431	-	TDE1926	-	hypothetical protein
1913	 42.62	0	1944124..1945878	+	584	42527432	pheT	TDE1927	-	phenylalanyl-tRNA synthetase subunit beta
1914	 36.77	0	1945888..1946643	+	251	42527433	-	TDE1928	-	hypothetical protein
1915	 35.31	0	1946664..1947521	-	285	42527434	-	TDE1929	-	hypothetical protein
1916	 38.22	0	1947522..1948646	-	374	42527435	-	TDE1930	-	hypothetical protein
1917	 45.50	+1	1948670..1949080	+	136	42527436	cdd	TDE1931	-	cytidine deaminase
1918	 48.03	+1	1949221..1949499	-	92	42527437	-	TDE1932	-	hypothetical protein
1919	 46.61	+1	1949690..1952701	-	1003	42527438	-	TDE1933	-	hypothetical protein
1920	 38.74	0	1952754..1952864	+	36	42527439	-	TDE1934	-	hypothetical protein
1921	 34.41	0	1953134..1953226	+	30	42527440	-	TDE1935	-	hypothetical protein
1922	 37.04	0	1953226..1953414	+	62	42527441	-	TDE1936	-	hypothetical protein
1923	 35.24	0	1953404..1953508	+	34	42527442	-	TDE1937	-	hypothetical protein
1924	 37.25	0	1953780..1954646	+	288	42527443	-	TDE1938	-	hypothetical protein
1925	 40.60	0	1954767..1955495	+	242	42527444	-	TDE1939	-	hypothetical protein
1926	 39.72	0	1955534..1956598	-	354	42527445	-	TDE1940	-	hypothetical protein
1927	 37.83	0	1956595..1959375	-	926	42527446	-	TDE1941	-	hypothetical protein
1928	 33.33	0	1959397..1959498	+	33	42527447	-	TDE1942	-	hypothetical protein
1929	 39.77	0	1959526..1960146	-	206	42527448	rpsD	TDE1943	-	30S ribosomal protein S4
1930	 34.77	0	1960574..1961131	+	185	42527449	-	TDE1944	-	hypothetical protein
1931	 35.47	0	1961209..1961535	-	108	42527450	-	TDE1945	-	hypothetical protein
1932	 38.45	0	1961550..1962584	-	344	42527451	-	TDE1946	-	hypothetical protein
1933	 44.69	+1	1962607..1963539	-	310	42527452	-	TDE1947	-	ABC transporter, permease protein
1934	 41.07	0	1963544..1964641	-	365	42527453	-	TDE1948	-	ABC transporter, permease protein
1935	 41.08	0	1964634..1966157	-	507	42527454	-	TDE1949	-	ABC transporter, ATP-binding protein
1936	 40.22	0	1966281..1967354	-	357	42527455	-	TDE1950	-	membrane lipoprotein TmpC, putative
1937	 43.47	+1	1967493..1968419	-	308	42527456	-	TDE1951	-	ribonuclease Z
1938	 43.93	+1	1968486..1969136	-	216	42527457	-	TDE1952	-	hypothetical protein
1939	 39.41	0	1969120..1969761	-	213	42527458	-	TDE1953	-	TetR family transcriptional regulator
1940	 32.94	0	1969926..1970180	+	84	42527459	-	TDE1954	-	prevent-host-death family protein
1941	 29.82	-1	1970280..1970990	-	236	42527460	-	TDE1955	-	hypothetical protein
1942	 28.04	-1	1971254..1971442	+	62	42527461	-	TDE1956	-	hypothetical protein
1943	 26.81	-1	1971589..1972293	+	234	42527462	-	TDE1957	-	hypothetical protein
1944	 37.33	0	1972399..1973775	-	458	42527463	-	TDE1958	-	surface protein, putative
1945	 37.40	0	1973895..1974287	-	130	42527464	-	TDE1959	-	hypothetical protein
1946	 33.85	0	1974438..1974629	+	63	42527465	-	TDE1960	-	hypothetical protein
1947	 30.52	-1	1974640..1975065	-	141	42527466	-	TDE1961	-	PilT domain-containing protein
1948	 33.73	0	1975043..1975294	-	83	42527467	-	TDE1962	-	hypothetical protein
1949	 42.30	0	1975429..1977201	+	590	42527468	selB	TDE1963	-	selenocysteine-specific translation elongation factor
1950	 41.03	0	1977221..1978870	-	549	42527469	-	TDE1964	-	Na/Pi cotransporter family protein
1951	 43.44	+1	1978985..1980241	-	418	42527470	-	TDE1965	-	sodium/hydrogen exchanger family protein
1952	 41.94	0	1980413..1981690	+	425	42527471	htrA-1	TDE1966	-	trypsin domain/PDZ domain-containing protein
37.25	MEAN

5.76	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.