IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.25   STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1785	 36.11	0	1836551..1836766	-	71	42527304	-	TDE1798	-	hypothetical protein
1786	 26.74	-1	1836779..1837354	-	191	42527305	-	TDE1799	-	hypothetical protein
1787	 28.29	-1	1837517..1837774	-	85	42527306	-	TDE1800	-	hypothetical protein
1788	 25.77	-1	1837764..1838054	-	96	42527307	-	TDE1801	-	hypothetical protein
1789	 19.38	-2	1838070..1838198	-	42	42527308	-	TDE1802	-	hypothetical protein
1790	 29.00	-1	1838485..1839360	-	291	42527309	-	TDE1803	-	hypothetical protein
1791	 28.07	-1	1839566..1842112	-	848	42527310	-	TDE1804	-	hypothetical protein
1792	 28.59	-1	1842125..1842946	-	273	42527311	-	TDE1805	-	radical SAM domain-containing protein
1793	 29.30	-1	1843280..1843552	-	90	42527312	-	TDE1806	-	hypothetical protein
1794	 30.93	-1	1843524..1843856	-	110	42527313	-	TDE1807	-	hypothetical protein
1795	 26.60	-1	1844174..1845139	-	321	42527314	-	TDE1808	-	hypothetical protein
1796	 14.14	-2	1845305..1845403	-	32	42527315	-	TDE1809	-	hypothetical protein
1797	 19.60	-2	1846014..1846508	-	164	42527316	-	TDE1810	-	hypothetical protein
1798	 24.89	-2	1846863..1847573	-	236	42527317	-	TDE1811	-	hypothetical protein
1799	 26.81	-1	1847670..1847945	-	91	42527318	-	TDE1812	-	hypothetical protein
1800	 26.87	-1	1847953..1848339	-	128	42527319	-	TDE1813	-	hypothetical protein
1801	 24.18	-2	1848519..1849403	-	294	42527320	-	TDE1814	-	hypothetical protein
1802	 26.35	-1	1849548..1850234	-	228	42527321	-	TDE1815	-	hypothetical protein
1803	 28.82	-1	1850567..1851763	-	398	42527322	-	TDE1816	-	hypothetical protein
1804	 25.54	-2	1851856..1852689	-	277	42527323	-	TDE1817	-	hypothetical protein
1805	 28.33	-1	1852922..1853881	-	319	42527324	-	TDE1818	-	hypothetical protein
1806	 28.21	-1	1854125..1854241	-	38	42527325	-	TDE1819	-	hypothetical protein
1807	 33.33	0	1854387..1854782	-	131	42527326	-	TDE1820	-	hypothetical protein
1808	 27.75	-1	1854905..1855477	-	190	42527327	-	TDE1821	-	hypothetical protein
1809	 22.75	-2	1855569..1856012	-	147	42527328	-	TDE1822	-	hypothetical protein
1810	 25.13	-2	1856691..1857080	-	129	42527329	-	TDE1823	-	hypothetical protein
1811	 29.63	-1	1857151..1857258	+	35	42527330	-	TDE1824	-	hypothetical protein
1812	 27.67	-1	1857340..1858434	-	364	42527331	-	TDE1825	-	hypothetical protein
1813	 35.38	0	1858651..1859871	-	406	42527332	-	TDE1826	-	hypothetical protein
1814	 33.78	0	1860033..1860920	-	295	42527333	-	TDE1827	-	carbon-nitrogen family hydrolase
1815	 27.23	-1	1861024..1861842	-	272	42527334	-	TDE1828	-	hypothetical protein
1816	 33.72	0	1862457..1863737	-	426	42527335	-	TDE1829	-	hypothetical protein
1817	 22.76	-2	1863723..1863845	+	40	42527336	-	TDE1830	-	hypothetical protein
1818	 24.60	-2	1864505..1865122	-	205	42527337	-	TDE1831	-	hypothetical protein
1819	 27.73	-1	1865262..1866011	-	249	42527338	-	TDE1832	-	hypothetical protein
1820	 23.29	-2	1866367..1866804	-	145	42527339	-	TDE1833	-	hypothetical protein
1821	 24.79	-2	1866873..1866989	-	38	42527340	-	TDE1834	-	hypothetical protein
1822	 24.22	-2	1866992..1868407	-	471	42527341	-	TDE1835	-	hypothetical protein
1823	 26.77	-1	1868604..1869533	-	309	42527342	-	TDE1836	-	hypothetical protein
1824	 31.36	-1	1869632..1870036	-	134	42527343	-	TDE1837	-	hypothetical protein
1825	 33.33	0	1870058..1870255	-	65	42527344	-	TDE1838	-	hypothetical protein
1826	 26.84	-1	1870481..1871311	-	276	42527345	-	TDE1839	-	hypothetical protein
1827	 28.29	-1	1871414..1871671	-	85	42527346	-	TDE1840	-	hypothetical protein
1828	 25.77	-1	1871661..1871951	-	96	42527347	-	TDE1841	-	hypothetical protein
1829	 19.38	-2	1871967..1872095	-	42	42527348	-	TDE1842	-	hypothetical protein
1830	 22.06	-2	1872289..1873095	-	268	42527349	-	TDE1843	-	hypothetical protein
1831	 44.05	+1	1873287..1874294	-	335	42527350	-	TDE1844	-	DNA integrase
1832	 27.91	-1	1874891..1875259	-	122	42527351	-	TDE1845	-	hypothetical protein
1833	 29.84	-1	1875259..1875516	-	85	42527352	-	TDE1846	-	hypothetical protein
1834	 56.86	+2	1875804..1875905	+	33	42527353	-	TDE1847	-	hypothetical protein
1835	 40.47	0	1875987..1877444	-	485	42527354	-	TDE1848	-	hypothetical protein
1836	 35.94	0	1877446..1878213	-	255	42527355	-	TDE1849	-	hypothetical protein
1837	 37.53	0	1878317..1879651	-	444	42527356	-	TDE1850	-	ABC transporter, permease protein, putative
1838	 39.12	0	1879667..1881187	-	506	42527357	-	TDE1851	-	ABC transporter, permease protein, putative
1839	 38.78	0	1881204..1881956	-	250	42527358	-	TDE1852	-	ABC transporter, ATP-binding protein
1840	 24.79	-2	1882056..1882172	-	38	42527359	-	TDE1853	-	hypothetical protein
1841	 28.70	-1	1882482..1882805	-	107	42527360	-	TDE1854	-	nucleotidyltransferase family protein
1842	 38.89	0	1882986..1883273	+	95	42527361	-	TDE1855	-	hypothetical protein
1843	 44.22	+1	1883273..1884016	+	247	42527362	-	TDE1856	-	radical SAM domain-containing protein
1844	 38.89	0	1884019..1884540	-	173	42527363	-	TDE1857	-	hypothetical protein
1845	 41.27	0	1884772..1885086	+	104	42527364	-	TDE1858	-	PadR family transcriptional regulator
1846	 34.25	0	1885097..1886290	+	397	42527365	-	TDE1859	-	hypothetical protein
1847	 38.98	0	1886292..1886822	+	176	42527366	-	TDE1860	-	hypothetical protein
1848	 34.65	0	1886819..1887046	-	75	42527367	-	TDE1861	-	hypothetical protein
1849	 35.91	0	1887068..1888039	+	323	42527368	-	TDE1862	-	hypothetical protein
1850	 43.89	+1	1888064..1888669	-	201	42527369	ruvA	TDE1863	-	Holliday junction DNA helicase RuvA
1851	 42.64	0	1888662..1889198	-	178	42527370	ruvC	TDE1864	-	crossover junction endodeoxyribonuclease RuvC
1852	 41.22	0	1889231..1892284	-	1017	42527371	-	TDE1865	-	M16 family peptidase
1853	 35.42	0	1892349..1892444	-	31	42527372	-	TDE1866	-	hypothetical protein
1854	 24.85	-2	1892441..1892605	-	54	42527373	-	TDE1867	-	hypothetical protein
1855	 22.86	-2	1892586..1892690	+	34	42527374	-	TDE1868	-	hypothetical protein
1856	 26.83	-1	1892637..1892759	-	40	42527375	-	TDE1869	-	hypothetical protein
1857	 26.28	-1	1892746..1893582	-	278	42527376	-	TDE1870	-	CAAX amino terminal protease family protein
1858	 18.35	-2	1893752..1894612	-	286	42527377	-	TDE1871	-	hypothetical protein
1859	 22.76	-2	1894659..1894781	-	40	42527378	-	TDE1872	-	hypothetical protein
1860	 19.72	-2	1894819..1895685	-	288	42527379	-	TDE1873	-	hypothetical protein
1861	 20.33	-2	1895730..1895852	-	40	42527380	-	TDE1874	-	hypothetical protein
1862	 33.33	0	1895896..1896996	-	366	42527381	-	TDE1875	-	hypothetical protein
1863	 38.87	0	1897029..1897769	-	246	42527382	-	TDE1876	-	WecB/TagA/CpsF family glycosyl transferase
1864	 40.18	0	1897750..1898523	-	257	42527383	-	TDE1877	-	hypothetical protein
1865	 39.69	0	1900050..1900835	-	261	42527384	-	TDE1878	-	HAD superfamily hydrolase
1866	 31.31	-1	1902675..1903118	+	147	42527385	-	TDE1880	-	hypothetical protein
1867	 39.67	0	1903140..1903691	+	183	42527386	-	TDE1881	-	methyltransferase, putative
1868	 39.49	0	1903684..1904967	+	427	42527387	-	TDE1882	-	glycosy hydrolase family protein
1869	 40.41	0	1905000..1905932	-	310	42527388	-	TDE1883	-	hypothetical protein
1870	 35.98	0	1905964..1906947	-	327	42527389	-	TDE1884	-	hypothetical protein
1871	 34.29	0	1906997..1907206	+	69	42527390	-	TDE1885	-	hypothetical protein
1872	 39.02	0	1907172..1908578	-	468	42527391	-	TDE1886	-	MiaB-like tRNA modifying enzyme
1873	 39.41	0	1908582..1909223	-	213	42527392	-	TDE1887	-	TPR domain-containing protein
1874	 40.74	0	1909213..1909590	-	125	42527393	-	TDE1888	-	hypothetical protein
1875	 38.30	0	1909590..1910978	-	462	42527394	brnQ	TDE1889	-	branched-chain amino acid transport system II carrier protein
1876	 30.43	-1	1911152..1911289	+	45	42527395	-	TDE1890	-	hypothetical protein
1877	 33.07	0	1911346..1912110	+	254	42527396	-	TDE1891	-	hypothetical protein
1878	 55.91	+2	1912205..1912297	+	30	42527397	-	TDE1892	-	hypothetical protein
1879	 44.46	+1	1912302..1914107	-	601	42527398	lepA	TDE1893	-	GTP-binding protein LepA
1880	 46.88	+1	1914253..1915101	+	282	42527399	-	TDE1894	-	ferredoxin
1881	 42.26	0	1915103..1915987	+	294	42527400	era	TDE1895	-	GTP-binding protein Era
1882	 46.19	+1	1915994..1917595	-	533	42527401	purH	TDE1896	-	phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
1883	 42.05	0	1917615..1918199	-	194	42527402	purN	TDE1897	-	phosphoribosylglycinamide formyltransferase
1884	 43.05	+1	1918212..1920980	-	922	42527403	secA	TDE1898	-	preprotein translocase subunit SecA
37.25	MEAN

5.76	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.