IslandPathversion 1.0

IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.25 STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1686	 30.07	-1	1757276..1758010	-	244	42527205	-	TDE1699	-	hypothetical protein
1687	 25.93	-1	1758180..1758287	+	35	42527206	-	TDE1700	-	hypothetical protein
1688	 41.22	0	1758280..1759407	+	375	42527207	-	TDE1701	-	hypothetical protein
1689	 27.42	-1	1759500..1760057	+	185	42527208	-	TDE1702	-	hypothetical protein
1690	 27.60	-1	1760123..1760698	+	191	42527209	-	TDE1703	-	hypothetical protein
1691	 29.05	-1	1760728..1761264	+	178	42527210	-	TDE1704	-	hypothetical protein
1692	 37.06	0	1761277..1762215	+	312	42527211	-	TDE1705	-	hypothetical protein
1693	 40.41	0	1762265..1762843	-	192	42527212	cinA	TDE1706	-	competence/damage-inducible protein CinA
1694	 38.61	0	1762865..1763281	-	138	42527213	-	TDE1707	-	hypothetical protein
1695	 31.80	0	1763278..1764912	-	544	42527214	cutE-1	TDE1708	-	apolipoprotein N-acyltransferase
1696	 39.88	0	1764909..1765229	-	106	42527215	-	TDE1709	-	HU family DNA-binding protein
1697	 44.07	+1	1765306..1765575	-	89	42527216	rpsT	TDE1710	-	30S ribosomal protein S20
1698	 34.70	0	1765642..1766808	-	388	42527217	-	TDE1711	-	RelA/SpoT domain-containing protein
1699	 40.95	0	1766956..1768005	-	349	42527218	flaA	TDE1712	-	flagellar filament outer layer protein
1700	 31.37	-1	1768100..1768558	-	152	42527219	-	TDE1713	-	hypothetical protein
1701	 36.19	0	1768573..1769586	-	337	42527220	-	TDE1714	-	N-acetylmuramoyl-L-alanine amidase
1702	 41.35	0	1769593..1770852	-	419	42527221	pgk	TDE1715	-	phosphoglycerate kinase
1703	 39.15	0	1770941..1771318	-	125	42527222	-	TDE1716	-	glyoxalase family protein
1704	 38.71	0	1771571..1772221	+	216	42527223	-	TDE1717	-	hypothetical protein
1705	 43.51	+1	1772300..1773871	+	523	42527224	guaA	TDE1718	-	bifunctional GMP synthase/glutamine amidotransferase protein
1706	 42.92	0	1774169..1774606	+	145	42527225	-	TDE1719	-	MarR family transcriptional regulator
1707	 47.68	+1	1774603..1775292	+	229	42527226	-	TDE1720	-	radical SAM domain-containing protein
1708	 45.87	+1	1775280..1776188	+	302	42527227	-	TDE1721	-	radical SAM domain-containing protein
1709	 33.62	0	1776225..1776578	+	117	42527228	-	TDE1722	-	hypothetical protein
1710	 46.67	+1	1776775..1777839	+	354	42527229	-	TDE1723	-	hypothetical protein
1711	 29.76	-1	1777901..1778431	+	176	42527230	-	TDE1724	-	hypothetical protein
1712	 41.69	0	1778483..1779367	-	294	42527231	-	TDE1725	-	hypothetical protein
1713	 38.06	0	1779686..1780828	+	380	42527232	-	TDE1726	-	polyA polymerase family protein
1714	 40.05	0	1780864..1781280	-	138	42527233	-	TDE1727	-	hypothetical protein
1715	 35.26	0	1781306..1783324	-	672	42527234	-	TDE1728	-	hypothetical protein
1716	 35.26	0	1783379..1783846	-	155	42527235	-	TDE1729	-	glutathione peroxidase (selenocysteine-containing)
1717	 42.93	0	1783833..1785635	-	600	42527236	-	TDE1730	-	glycosy hydrolase family protein
1718	 42.02	0	1785622..1787025	-	467	42527237	-	TDE1731	-	hypothetical protein
1719	 33.81	0	1787170..1788006	+	278	42527238	-	TDE1732	-	hypothetical protein
1720	 43.24	+1	1787993..1788739	+	248	42527239	map	TDE1733	-	methionine aminopeptidase, type I
1721	 42.67	0	1788753..1789523	+	256	42527240	xth	TDE1734	-	exodeoxyribonuclease III
1722	 25.64	-2	1789942..1790058	+	38	42527241	-	TDE1735	-	hypothetical protein
1723	 48.54	+1	1790048..1790218	+	56	42527242	-	TDE1736	-	ferredoxin, 2(4Fe-4S)
1724	 36.93	0	1790273..1790689	+	138	42527243	-	TDE1737	-	hypothetical protein
1725	 40.24	0	1790676..1791587	+	303	42527244	-	TDE1738	-	M23/M37 peptidase domain-containing protein
1726	 34.37	0	1791653..1792717	+	354	42527245	-	TDE1739	-	femAB family protein
1727	 45.51	+1	1792720..1792875	-	51	42527246	-	TDE1740	-	hypothetical protein
1728	 42.19	0	1792932..1795472	+	846	42527247	-	TDE1741	-	penicillin-binding protein
1729	 40.60	0	1795743..1797668	-	641	42527248	-	TDE1742	-	AMP-binding enzyme family protein
1730	 39.18	0	1798030..1798593	-	187	42527249	-	TDE1743	-	chromate transport protein
1731	 38.44	0	1798593..1799180	-	195	42527250	-	TDE1744	-	chromate transport protein
1732	 37.22	0	1799205..1799564	-	119	42527251	-	TDE1745	-	hypothetical protein
1733	 39.69	0	1799564..1800805	-	413	42527252	-	TDE1746	-	hypothetical protein
1734	 37.75	0	1800802..1802025	-	407	42527253	nadD	TDE1747	-	putative nicotinate-nucleotide adenylyltransferase
1735	 42.65	0	1802022..1803170	-	382	42527254	obgE	TDE1748	-	GTPase ObgE
1736	 43.25	+1	1803248..1803499	-	83	42527255	rpmA	TDE1749	-	50S ribosomal protein L27
1737	 43.93	+1	1803529..1803915	-	128	42527256	-	TDE1750	-	hypothetical protein
1738	 41.35	0	1803921..1804232	-	103	42527257	rplU	TDE1751	-	50S ribosomal protein L21
1739	 31.66	0	1804412..1805488	-	358	42527258	-	TDE1752	-	ISTde2, transposase
1740	 41.08	0	1805611..1806630	-	339	42527259	galE	TDE1753	-	UDP-glucose 4-epimerase
1741	 41.86	0	1806727..1807113	-	128	42527260	-	TDE1754	-	desulfoferrodoxin/neelaredoxin
1742	 27.19	-1	1807134..1807247	+	37	42527261	-	TDE1755	-	hypothetical protein
1743	 33.12	0	1807433..1807900	-	155	42527262	-	TDE1756	-	hypothetical protein
1744	 22.01	-2	1807872..1808030	+	52	42527263	-	TDE1757	-	hypothetical protein
1745	 21.20	-2	1808070..1808654	-	194	42527264	-	TDE1758	-	hypothetical protein
1746	 26.74	-1	1808679..1809254	-	191	42527265	-	TDE1759	-	hypothetical protein
1747	 33.93	0	1809293..1809958	-	221	42527266	-	TDE1760	-	HD domain-containing protein
1748	 28.87	-1	1809970..1810260	-	96	42527267	-	TDE1761	-	hypothetical protein
1749	 29.03	-1	1810275..1810994	-	239	42527268	-	TDE1762	-	HAD superfamily hydrolase
1750	 37.88	0	1810966..1811295	-	109	42527269	-	TDE1763	-	hypothetical protein
1751	 17.80	-2	1811317..1811670	-	117	42527270	-	TDE1764	-	hypothetical protein
1752	 20.26	-2	1811663..1811968	-	101	42527271	-	TDE1765	-	hypothetical protein
1753	 30.28	-1	1812365..1812823	-	152	42527272	-	TDE1766	-	hypothetical protein
1754	 21.03	-2	1813016..1813657	-	213	42527273	-	TDE1767	-	hypothetical protein
1755	 20.07	-2	1813759..1814037	-	92	42527274	-	TDE1768	-	hypothetical protein
1756	 25.41	-2	1814039..1814467	-	142	42527275	-	TDE1769	-	hypothetical protein
1757	 26.80	-1	1814376..1814528	+	50	42527276	-	TDE1770	-	hypothetical protein
1758	 25.26	-2	1814669..1815448	-	259	42527277	-	TDE1771	-	hypothetical protein
1759	 24.80	-2	1815533..1815907	-	124	42527278	-	TDE1772	-	hypothetical protein
1760	 28.86	-1	1816499..1817191	-	230	42527279	-	TDE1773	-	hypothetical protein
1761	 31.28	-1	1817590..1817979	-	129	42527280	-	TDE1774	-	hypothetical protein
1762	 25.00	-2	1818160..1818267	-	35	42527281	-	TDE1775	-	hypothetical protein
1763	 27.11	-1	1818504..1819322	-	272	42527282	-	TDE1776	-	hypothetical protein
1764	 23.29	-2	1820046..1820483	-	145	42527283	-	TDE1777	-	hypothetical protein
1765	 24.79	-2	1820552..1820668	-	38	42527284	-	TDE1778	-	hypothetical protein
1766	 24.22	-2	1820671..1822086	-	471	42527285	-	TDE1779	-	hypothetical protein
1767	 29.37	-1	1822273..1822398	-	41	42527286	-	TDE1780	-	hypothetical protein
1768	 21.46	-2	1822568..1823350	-	260	42527287	-	TDE1781	-	hypothetical protein
1769	 51.75	+2	1823394..1823507	-	37	42527288	-	TDE1782	-	hypothetical protein
1770	 27.98	-1	1823528..1823695	-	55	42527289	-	TDE1783	-	hypothetical protein
1771	 40.57	0	1823671..1824513	-	280	42527290	-	TDE1784	-	AraC family transcriptional regulator
1772	 27.64	-1	1825132..1825254	+	40	42527291	-	TDE1785	-	hypothetical protein
1773	 24.14	-2	1825195..1826238	-	347	42527292	-	TDE1786	-	hypothetical protein
1774	 28.29	-1	1826468..1826725	-	85	42527293	-	TDE1787	-	hypothetical protein
1775	 26.39	-1	1826718..1827005	-	95	42527294	-	TDE1788	-	hypothetical protein
1776	 27.54	-1	1827428..1827703	-	91	42527295	-	TDE1789	-	hypothetical protein
1777	 26.36	-1	1827711..1828097	-	128	42527296	-	TDE1790	-	hypothetical protein
1778	 24.57	-2	1828398..1828865	-	155	42527297	-	TDE1791	-	hypothetical protein
1779	 24.18	-2	1829001..1829885	-	294	42527298	-	TDE1792	-	hypothetical protein
1780	 34.01	0	1830047..1830934	-	295	42527299	-	TDE1793	-	carbon-nitrogen family hydrolase
1781	 27.37	-1	1831105..1833048	-	647	42527300	-	TDE1794	-	hypothetical protein
1782	 29.92	-1	1833153..1834763	-	536	42527301	-	TDE1795	-	funZ protein, putative
1783	 27.73	-1	1834856..1835605	-	249	42527302	-	TDE1796	-	hypothetical protein
1784	 24.60	-2	1835745..1836362	-	205	42527303	-	TDE1797	-	hypothetical protein
1785	 36.11	0	1836551..1836766	-	71	42527304	-	TDE1798	-	hypothetical protein
37.25	MEAN

5.76	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.