IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.25   STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
92	 39.15	0	109867..111345	-	492	42525611	cysS	TDE0092	-	cysteinyl-tRNA synthetase
93	 39.20	0	111397..112368	+	323	42525612	-	TDE0093	-	UDP-N-acetylenolpyruvoylglucosamine reductase, putative
94	 24.00	-2	112359..112508	+	49	42525613	-	TDE0094	-	hypothetical protein
95	 34.03	0	112539..112682	+	47	42525614	-	TDE0095	-	hypothetical protein
96	 40.00	0	112863..114197	+	444	42525615	-	TDE0096	-	NADH oxidase
97	 28.57	-1	114337..114861	+	174	42525616	-	TDE0097	-	hypothetical protein
98	 34.44	0	114932..115651	-	239	42525617	-	TDE0098	-	hypothetical protein
99	 35.35	0	115788..117074	+	428	42525618	-	TDE0099	-	adenine-specific DNA modification methyltransferase
100	 41.30	0	117064..119034	-	656	42525619	-	TDE0100	-	hypothetical protein
101	 38.00	0	119107..121251	-	714	42525620	-	TDE0101	-	alpha-amylase family protein
102	 35.73	0	121315..122607	+	430	42525621	-	TDE0102	-	cyclic nucleotide-binding protein
103	 40.33	0	122634..123776	-	380	42525622	-	TDE0103	-	aminotransferase, class-V
104	 39.63	0	123773..124804	-	343	42525623	-	TDE0104	-	3-dehydroquinate synthase
105	 39.70	0	124822..125544	-	240	42525624	-	TDE0105	-	MTA/SAH nucleosidase
106	 39.50	0	125632..126636	-	334	42525625	-	TDE0106	-	hypothetical protein
107	 38.13	0	126731..128356	-	541	42525626	-	TDE0107	-	alpha-amylase family protein
108	 32.36	0	128539..128847	+	102	42525627	-	TDE0108	-	hypothetical protein
109	 42.57	0	128923..130470	-	515	42525628	pheS	TDE0109	-	phenylalanyl-tRNA synthetase subunit alpha
110	 41.28	0	130721..131752	+	343	42525629	-	TDE0110	-	M23/M37 peptidase domain-containing protein
111	 42.62	0	131755..132174	+	139	42525630	-	TDE0111	-	hypothetical protein
112	 34.76	0	132184..132744	+	186	42525631	-	TDE0112	-	hypothetical protein
113	 38.91	0	132755..133669	+	304	42525632	-	TDE0113	-	tpl protein
114	 37.38	0	133671..134090	-	139	42525633	-	TDE0114	-	iron-dependent transcriptional regulator
115	 34.72	0	134194..134841	+	215	42525634	-	TDE0115	-	hypothetical protein
116	 38.55	0	134849..135730	+	293	42525635	-	TDE0116	-	hypothetical protein
117	 33.55	0	135753..136667	+	304	42525636	-	TDE0117	-	putative lipoprotein
118	 38.19	0	136664..137137	-	157	42525637	-	TDE0118	-	hypothetical protein
119	 37.19	0	137148..137588	-	146	42525638	fliS	TDE0119	-	flagellar protein FliS
120	 41.50	0	137788..138987	+	399	42525639	-	TDE0120	-	hypothetical protein
121	 36.85	0	139010..140575	+	521	42525640	-	TDE0121	-	hypothetical protein
122	 42.31	0	140616..141629	-	337	42525641	-	TDE0122	-	dihydrouridine synthase, putative
123	 38.91	0	141633..142313	-	226	42525642	-	TDE0123	-	hypothetical protein
124	 36.67	0	142334..142963	-	209	42525643	-	TDE0124	-	rhomboid family protein
125	 32.71	0	142985..144100	-	371	42525644	-	TDE0125	-	GGDEF domain-containing protein
126	 33.39	0	144081..145727	-	548	42525645	-	TDE0126	-	hypothetical protein
127	 32.70	0	145890..146204	+	104	42525646	-	TDE0127	-	DNA-binding protein
128	 33.58	0	146380..148785	+	801	42525647	-	TDE0128	-	HAMP domain/GGDEF domain/EAL domain-containing protein
129	 41.54	0	148782..150389	-	535	42525648	pyrB	TDE0129	-	bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit
130	 40.32	0	150685..152058	+	457	42525649	-	TDE0130	-	sodium/dicarboxylate symporter family protein
131	 29.03	-1	152069..152161	+	30	42525650	-	TDE0131	-	hypothetical protein
132	 32.16	0	152186..152356	+	56	42525651	-	TDE0132	-	hypothetical protein
133	 37.60	0	152513..153262	+	249	42525652	-	TDE0133	-	GntR family transcriptional regulator
134	 44.20	+1	153544..155070	+	508	42525653	-	TDE0134	-	oxidoreductase, FAD-dependent
135	 44.57	+1	155067..156437	+	456	42525654	-	TDE0135	-	pyridine nucleotide-disulphide oxidoreductase family protein
136	 45.66	+1	156427..156783	+	118	42525655	-	TDE0136	-	hypothetical protein
137	 44.62	+1	156780..158339	+	519	42525656	-	TDE0137	-	carbohydrate kinase
138	 45.20	+1	158361..160121	+	586	42525657	-	TDE0138	-	alkyldihydroxyacetonephosphate synthase, putative
139	 37.80	0	160211..162673	-	820	42525658	-	TDE0139	-	hypothetical protein
140	 31.66	0	162871..163947	+	358	42525659	-	TDE0140	-	ISTde2, transposase
141	 44.76	+1	164021..164125	+	34	42525660	-	TDE0141	-	hypothetical protein
142	 50.00	+2	164069..164164	-	31	42525661	-	TDE0142	-	hypothetical protein
143	 41.94	0	164153..165163	+	336	42525662	-	TDE0143	-	thiamine ABC transporter, thiamine-binding protein
144	 39.33	0	165147..166829	+	560	42525663	-	TDE0144	-	thiamine ABC transporter, permease protein
145	 46.76	+1	166840..167472	+	210	42525664	-	TDE0145	-	thiamine ABC transporter, ATP-binding protein
146	 40.40	0	167525..168727	-	400	42525665	-	TDE0146	-	amidohydrolase family protein
147	 27.69	-1	168879..169073	-	64	42525666	-	TDE0147	-	hypothetical protein
148	 30.23	-1	169111..169980	+	289	42525667	-	TDE0148	-	histidine kinase-related ATPase, putative
149	 33.50	0	169961..170566	+	201	42525668	-	TDE0149	-	DNA-binding response regulator
150	 31.65	0	170578..171885	+	435	42525669	-	TDE0150	-	ribonuclease BN-like family protein
151	 37.63	0	171935..173191	-	418	42525670	-	TDE0151	-	YeeE/YedE family integral membrane protein
152	 37.09	0	173212..174567	-	451	42525671	-	TDE0152	-	amino acid permease family protein
153	 38.63	0	174578..176275	-	565	42525672	-	TDE0153	-	coenzyme A disulfide reductase, putative
154	 32.56	0	176298..178376	-	692	42525673	-	TDE0154	-	adenylate/guanylate cyclase catalytic domain-containing protein
155	 32.32	0	178373..180244	-	623	42525674	-	TDE0155	-	adenylate/guanylate cyclase catalytic domain-containing protein
156	 46.00	+1	180434..183661	-	1075	42525675	-	TDE0156	-	adenylate/guanylate cyclase catalytic domain-containing protein
157	 43.15	+1	183999..185771	+	590	42525676	-	TDE0157	-	KHG/KDPG family aldolase/carbohydrate kinase
158	 35.11	0	185814..186038	-	74	42525677	-	TDE0158	-	hypothetical protein
159	 27.72	-1	187235..187786	-	183	42525678	-	TDE0160	-	hypothetical protein
160	 21.90	-2	187815..187919	-	34	42525679	-	TDE0161	-	hypothetical protein
161	 43.30	+1	188038..192942	+	1634	42525680	-	TDE0162	-	hypothetical protein
162	 44.29	+1	193036..193473	-	145	42525681	-	TDE0163	-	flavodoxin
163	 38.83	0	193507..194088	-	193	42525682	-	TDE0164	-	hypothetical protein
164	 34.97	0	194262..195116	+	284	42525683	-	TDE0165	-	hypothetical protein
165	 35.52	0	195140..195961	-	273	42525684	-	TDE0166	-	hypothetical protein
166	 38.03	0	195963..196664	-	233	42525685	-	TDE0167	-	ABC transporter, ATP-binding protein
167	 40.05	0	196757..197158	-	133	42525686	-	TDE0168	-	GntR family transcriptional regulator
168	 40.45	0	197224..198882	-	552	42525687	-	TDE0169	-	methyl-accepting chemotaxis domain-containing protein
169	 40.54	0	198929..200080	+	383	42525688	-	TDE0170	-	nuclease SbcCD, D subunit, putative
170	 39.61	0	200105..203197	+	1030	42525689	-	TDE0171	-	nuclease SbcCD, C subunit, putative
171	 39.63	0	203276..204085	+	269	42525690	uppP	TDE0172	-	undecaprenyl pyrophosphate phosphatase
172	 40.10	0	204110..206650	+	846	42525691	-	TDE0173	-	FtsK/SpoIIIE family protein
173	 41.06	0	206674..208110	+	478	42525692	-	TDE0174	-	nicotinate phosphoribosyltransferase
174	 41.59	0	208219..208872	-	217	42525693	pcp	TDE0175	-	pyrrolidone-carboxylate peptidase
175	 38.64	0	208890..209888	-	332	42525694	-	TDE0176	-	hypothetical protein
176	 37.63	0	209881..210555	-	224	42525695	-	TDE0177	-	hypothetical protein
177	 44.76	+1	210628..212718	-	696	42525696	-	TDE0178	-	methyl-accepting chemotaxis protein
178	 32.43	0	212861..212971	-	36	42525697	-	TDE0179	-	hypothetical protein
179	 32.73	0	212944..213108	-	54	42525698	-	TDE0180	-	hypothetical protein
180	 42.90	0	213077..215167	-	696	42525699	-	TDE0181	-	methyl-accepting chemotaxis protein
181	 37.58	0	215224..216873	-	549	42525700	-	TDE0182	-	ABC transporter, ATP-binding protein
182	 39.80	0	216873..218681	-	602	42525701	-	TDE0183	-	ABC transporter, permease protein
183	 32.65	0	218888..220648	+	586	42525702	-	TDE0184	-	ABC transporter, ATP-binding protein
184	 32.82	0	220638..222395	+	585	42525703	-	TDE0185	-	ABC transporter ATP-binding protein
185	 39.67	0	222463..223788	-	441	42525704	-	TDE0186	-	hypothetical protein
186	 36.20	0	223985..224752	+	255	42525705	-	TDE0187	-	carboxylesterase, putative
187	 37.33	0	224861..225760	+	299	42525706	-	TDE0188	-	adenosine deaminase
188	 37.26	0	225762..226550	-	262	42525707	-	TDE0189	-	hypothetical protein
189	 38.63	0	226569..227456	-	295	42525708	-	TDE0190	-	hypothetical protein
190	 35.90	0	227468..227896	-	142	42525709	-	TDE0191	-	acetyltransferase
191	 37.39	0	227907..228671	-	254	42525710	-	TDE0192	-	hypothetical protein
37.25	MEAN

5.76	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.