IslandPathversion 1.0

IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.25 STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1314	 33.33	0	1361710..1361811	-	33	42526833	-	TDE1325	-	hypothetical protein
1315	 38.24	0	1361801..1361902	+	33	42526834	-	TDE1326	-	hypothetical protein
1316	 33.42	0	1361879..1363039	-	386	42526835	-	TDE1327	-	hypothetical protein
1317	 36.51	0	1363052..1363492	-	146	42526836	-	TDE1328	-	hypothetical protein
1318	 42.52	0	1363643..1365406	+	587	42526837	-	TDE1329	-	AAA family ATPase
1319	 38.38	0	1365519..1365974	+	151	42526838	-	TDE1330	-	transcriptional regulator NrdR
1320	 43.58	+1	1366008..1368134	+	708	42526839	nrdD	TDE1331	-	anaerobic ribonucleoside triphosphate reductase
1321	 37.93	0	1368182..1369138	+	318	42526840	-	TDE1332	-	hflK protein, putative
1322	 38.12	0	1369144..1370208	+	354	42526841	-	TDE1333	-	hflC protein, putative
1323	 41.78	0	1370284..1370934	+	216	42526842	-	TDE1334	-	hypothetical protein
1324	 35.10	0	1370956..1372428	+	490	42526843	-	TDE1335	-	alginate O-acetylation protein, putative
1325	 34.98	0	1372443..1373840	+	465	42526844	-	TDE1336	-	hypothetical protein
1326	 38.04	0	1373856..1374896	-	346	42526845	-	TDE1337	-	hypothetical protein
1327	 39.77	0	1375029..1375883	+	284	42526846	ispE	TDE1338	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase
1328	 41.49	0	1375947..1376228	+	93	42526847	-	TDE1339	-	stage V sporulation protein G
1329	 39.78	0	1376457..1377092	+	211	42526848	-	TDE1340	-	50S ribosomal protein L25/general stress protein Ctc
1330	 37.67	0	1377203..1378585	+	460	42526849	-	TDE1341	-	hypothetical protein
1331	 37.89	0	1378582..1380621	+	679	42526850	-	TDE1342	-	hypothetical protein
1332	 39.54	0	1380686..1382296	+	536	42526851	-	TDE1343	-	trypsin domain/PDZ domain-containing protein
1333	 35.04	0	1382532..1383410	+	292	42526852	-	TDE1344	-	hypothetical protein
1334	 39.37	0	1383579..1385366	+	595	42526853	dnaG	TDE1345	-	DNA primase
1335	 39.46	0	1385359..1387218	+	619	42526854	-	TDE1346	-	RNA polymerase sigma factor RpoD
1336	 37.92	0	1387265..1388092	+	275	42526855	-	TDE1347	-	hypothetical protein
1337	 34.62	0	1388473..1389408	+	311	42526856	-	TDE1348	-	TPR domain-containing protein
1338	 43.48	+1	1389426..1390460	+	344	42526857	mreB	TDE1349	-	rod shape-determining protein MreB
1339	 36.34	0	1390467..1391330	+	287	42526858	mreC	TDE1350	-	rod shape-determining protein MreC
1340	 30.83	-1	1391335..1391853	+	172	42526859	mreD	TDE1351	-	rod shape-determining protein MreD
1341	 41.10	0	1391840..1393693	+	617	42526860	-	TDE1352	-	penicillin-binding protein
1342	 35.10	0	1393690..1394991	+	433	42526861	rodA	TDE1353	-	rod shape-determining protein RodA
1343	 35.83	0	1395026..1395265	+	79	42526862	-	TDE1354	-	hypothetical protein
1344	 30.68	-1	1395249..1395587	+	112	42526863	-	TDE1355	-	hypothetical protein
1345	 39.16	0	1395764..1396759	-	331	42526864	-	TDE1356	-	putative lipoprotein
1346	 39.96	0	1396835..1397890	+	351	42526865	galM	TDE1357	-	aldose 1-epimerase
1347	 30.30	-1	1397872..1397970	+	32	42526866	-	TDE1358	-	hypothetical protein
1348	 32.02	0	1397887..1399254	-	455	42526867	-	TDE1359	-	hypothetical protein
1349	 40.92	0	1399437..1400741	+	434	42526868	-	TDE1360	-	xanthine/uracil permease family protein
1350	 35.69	0	1400828..1401166	+	112	42526869	-	TDE1361	-	hypothetical protein
1351	 38.80	0	1401132..1404203	+	1023	42526870	-	TDE1362	-	hypothetical protein
1352	 41.18	0	1404216..1404725	-	169	42526871	-	TDE1363	-	nitroreductase family protein
1353	 43.22	+1	1404903..1407632	+	909	42526872	valS	TDE1364	-	valyl-tRNA synthetase
1354	 29.53	-1	1407895..1408473	+	192	42526873	-	TDE1365	-	TetR family transcriptional regulator
1355	 23.54	-2	1408498..1409079	+	193	42526874	-	TDE1366	-	CDP-alcohol phosphatidyltransferase family protein
1356	 34.64	0	1409117..1409500	+	127	42526875	-	TDE1367	-	glyoxalase family protein
1357	 33.33	0	1409517..1409885	-	122	42526876	-	TDE1368	-	hypothetical protein
1358	 42.74	0	1409894..1411882	-	662	42526877	uvrB	TDE1369	-	excinuclease ABC subunit B
1359	 39.03	0	1411884..1413374	-	496	42526878	-	TDE1370	-	YjeF-related protein
1360	 40.81	0	1413388..1415259	-	623	42526879	-	TDE1371	-	RNB-like family protein
1361	 34.65	0	1415323..1416987	-	554	42526880	-	TDE1372	-	hypothetical protein
1362	 35.29	0	1417269..1417931	-	220	42526881	-	TDE1373	-	HD domain-containing protein
1363	 36.19	0	1417984..1418088	-	34	42526882	-	TDE1374	-	hypothetical protein
1364	 37.89	0	1418221..1418703	+	160	42526883	coaD	TDE1375	-	pantetheine-phosphate adenylyltransferase
1365	 34.30	0	1418726..1419139	+	137	42526884	-	TDE1376	-	hypothetical protein
1366	 29.87	-1	1419173..1419922	-	249	42526885	-	TDE1377	-	hypothetical protein
1367	 26.53	-1	1419900..1420046	-	48	42526886	-	TDE1378	-	hypothetical protein
1368	 38.91	0	1420104..1420748	-	214	42526887	-	TDE1379	-	hypothetical protein
1369	 40.58	0	1420823..1421374	-	183	42526888	-	TDE1380	-	hypothetical protein
1370	 40.61	0	1421378..1421995	-	205	42526889	atpE	TDE1381	-	V-type ATP synthase subunit E
1371	 43.22	+1	1422140..1422493	+	117	42526890	-	TDE1382	-	ArsR family transcriptional regulator
1372	 47.98	+1	1422441..1422911	+	156	42526891	-	TDE1383	-	hypothetical protein
1373	 41.93	0	1422905..1424836	+	643	42526892	cadA	TDE1384	-	cadmium-translocating P-type ATPase
1374	 35.19	0	1424883..1424990	-	35	42526893	-	TDE1385	-	hypothetical protein
1375	 35.89	0	1425081..1426916	+	611	42526894	-	TDE1386	-	methyl-accepting chemotaxis protein
1376	 36.38	0	1426905..1427822	-	305	42526895	-	TDE1387	-	RNA pseudouridylate synthase family protein
1377	 39.20	0	1427896..1428372	+	158	42526896	-	TDE1388	-	hypothetical protein
1378	 34.91	0	1428378..1429835	+	485	42526897	-	TDE1389	-	hypothetical protein
1379	 36.52	0	1429832..1431118	+	428	42526898	-	TDE1390	-	hypothetical protein
1380	 38.07	0	1431115..1432149	+	344	42526899	-	TDE1391	-	NQR2/RnfD/RnfE family protein
1381	 34.35	0	1432142..1432633	+	163	42526900	-	TDE1392	-	hypothetical protein
1382	 36.20	0	1432634..1433227	+	197	42526901	-	TDE1393	-	hypothetical protein
1383	 32.41	0	1433224..1433763	+	179	42526902	-	TDE1394	-	hypothetical protein
1384	 36.57	0	1433855..1435738	+	627	42526903	-	TDE1395	-	glycosy hydrolase family protein
1385	 33.07	0	1435801..1436187	+	128	42526904	-	TDE1396	-	hypothetical protein
1386	 39.07	0	1436154..1437320	+	388	42526905	-	TDE1397	-	flagellar synthesis regulator FleN, putative
1387	 40.05	0	1437332..1439518	+	728	42526906	-	TDE1398	-	hypothetical protein
1388	 41.30	0	1439533..1440549	+	338	42526907	lgt	TDE1399	-	prolipoprotein diacylglyceryl transferase
1389	 38.04	0	1440542..1442494	+	650	42526908	nadE	TDE1400	-	NAD synthetase
1390	 38.62	0	1442505..1443128	+	207	42526909	-	TDE1401	-	DedA family protein
1391	 40.06	0	1443298..1444575	+	425	42526910	-	TDE1402	-	hypothetical protein
1392	 44.41	+1	1444590..1446593	-	667	42526911	-	TDE1403	-	ABC transporter, ATP-binding protein
1393	 39.85	0	1446598..1447917	-	439	42526912	-	TDE1404	-	putative lipoprotein
1394	 42.68	0	1447952..1448764	-	270	42526913	purQ	TDE1405	-	phosphoribosylformylglycinamidine synthetase I
1395	 37.75	0	1448767..1449468	-	233	42526914	-	TDE1406	-	hypothetical protein
1396	 38.66	0	1449523..1450761	-	412	42526915	-	TDE1407	-	hypothetical protein
1397	 37.55	0	1450969..1451679	+	236	42526916	-	TDE1408	-	flagellar filament outer layer protein FlaA, putative
1398	 40.08	0	1451701..1452441	+	246	42526917	-	TDE1409	-	flagellar filament outer layer protein FlaA, putative
1399	 35.74	0	1452564..1453229	-	221	42526918	-	TDE1410	-	hypothetical protein
1400	 37.50	0	1453253..1453492	-	79	42526919	-	TDE1411	-	hypothetical protein
1401	 38.90	0	1453602..1455326	+	574	42526920	-	TDE1412	-	sodium/hydrogen exchanger family protein
1402	 41.86	0	1455650..1456951	+	433	42526921	-	TDE1413	-	cytidylyltransferase/phosphoenolpyruvate phosphomutase, putative
1403	 41.25	0	1456952..1458088	+	378	42526922	-	TDE1414	-	phosphonopyruvate decarboxylase, putative
1404	 39.98	0	1458081..1459931	+	616	42526923	-	TDE1415	-	nucleotidyl transferase/aminotransferase, class V
1405	 34.86	0	1459936..1460787	+	283	42526924	-	TDE1416	-	ABC transporter, permease protein
1406	 35.84	0	1460796..1462031	+	411	42526925	-	TDE1417	-	ABC transporter, ATP-binding protein
1407	 28.71	-1	1462058..1463440	+	460	42526926	-	TDE1418	-	hypothetical protein
1408	 29.58	-1	1463476..1464513	+	345	42526927	-	TDE1419	-	glycosyl transferase, group 2 family protein
1409	 32.25	0	1464515..1465714	+	399	42526928	-	TDE1420	-	hypothetical protein
1410	 24.24	-2	1465772..1465870	+	32	42526929	-	TDE1421	-	hypothetical protein
1411	 28.85	-1	1465885..1466910	+	341	42526930	-	TDE1422	-	glycosyl transferase, group 2 family protein
1412	 31.03	-1	1466926..1467273	+	115	42526931	-	TDE1423	-	hypothetical protein
1413	 34.53	0	1467275..1467691	+	138	42526932	-	TDE1424	-	hypothetical protein
37.25	MEAN

5.76	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.