IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.25   STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1281	 40.62	0	1328728..1329303	-	191	42526800	-	TDE1291	-	HD domain-containing protein
1282	 41.44	0	1329404..1330711	-	435	42526801	-	TDE1292	-	TldD/PmbA family protein
1283	 45.77	+1	1330711..1332093	-	460	42526802	-	TDE1293	-	TldD/PmbA family protein
1284	 39.33	0	1332145..1332411	-	88	42526803	ptsH	TDE1294	-	phosphocarrier protein HPr
1285	 36.08	0	1333554..1333844	-	96	42526804	-	TDE1296	-	ribosomal subunit interface protein, putative
1286	 41.94	0	1333967..1334872	-	301	42526805	-	TDE1297	-	LysM/M23/M37 peptidase
1287	 34.83	0	1334872..1335405	-	177	42526806	-	TDE1298	-	cyclic nucleotide binding domain-containing protein
1288	 36.68	0	1335507..1336703	-	398	42526807	-	TDE1299	-	hypothetical protein
1289	 36.91	0	1336700..1337509	-	269	42526808	-	TDE1300	-	hypothetical protein
1290	 41.46	0	1337521..1339206	-	561	42526809	recN	TDE1301	-	DNA repair protein RecN
1291	 35.19	0	1339303..1339734	-	143	42526810	-	TDE1302	-	hemerythrin family protein
1292	 30.73	-1	1339739..1339930	-	63	42526811	-	TDE1303	-	hypothetical protein
1293	 30.72	-1	1339856..1340008	+	50	42526812	-	TDE1304	-	hypothetical protein
1294	 39.73	0	1340240..1340458	+	72	42526813	-	TDE1305	-	DNA-binding protein
1295	 34.04	0	1340542..1340964	-	140	42526814	-	TDE1306	-	hypothetical protein
1296	 34.68	0	1341094..1342581	+	495	42526815	-	TDE1307	-	hypothetical protein
1297	 46.65	+1	1342603..1344630	+	675	42526816	tkt	TDE1308	-	transketolase
1298	 39.78	0	1344675..1346102	+	475	42526817	-	TDE1309	-	modulator of DNA gyrase family protein
1299	 39.65	0	1346102..1347400	+	432	42526818	-	TDE1310	-	modulator of DNA gyrase family protein
1300	 29.97	-1	1347511..1349115	+	534	42526819	-	TDE1311	-	ABC transporter, ATP-binding/permease protein
1301	 42.83	0	1349228..1350775	+	515	42526820	-	TDE1312	-	hypothetical protein
1302	 35.94	0	1350790..1351326	+	178	42526821	-	TDE1313	-	signal peptidase I
1303	 41.17	0	1351314..1353176	+	620	42526822	-	TDE1314	-	penicillin-binding protein
1304	 35.92	0	1353157..1354893	+	578	42526823	-	TDE1315	-	hypothetical protein
1305	 28.92	-1	1354881..1355084	+	67	42526824	-	TDE1316	-	hypothetical protein
1306	 34.34	0	1355060..1355554	-	164	42526825	-	TDE1317	-	hypothetical protein
1307	 34.89	0	1355587..1356741	+	384	42526826	-	TDE1318	-	hypothetical protein
1308	 34.70	0	1356738..1357910	+	390	42526827	-	TDE1319	-	hypothetical protein
1309	 37.71	0	1357904..1359478	+	524	42526828	-	TDE1320	-	ComEC/Rec2-related protein
1310	 42.20	0	1359475..1360083	+	202	42526829	-	TDE1321	-	hypothetical protein
1311	 29.57	-1	1360110..1360826	-	238	42526830	-	TDE1322	-	hypothetical protein
1312	 32.56	0	1360900..1361028	+	42	42526831	-	TDE1323	-	hypothetical protein
1313	 41.52	0	1361005..1361700	-	231	42526832	-	TDE1324	-	hypothetical protein
1314	 33.33	0	1361710..1361811	-	33	42526833	-	TDE1325	-	hypothetical protein
1315	 38.24	0	1361801..1361902	+	33	42526834	-	TDE1326	-	hypothetical protein
1316	 33.42	0	1361879..1363039	-	386	42526835	-	TDE1327	-	hypothetical protein
1317	 36.51	0	1363052..1363492	-	146	42526836	-	TDE1328	-	hypothetical protein
1318	 42.52	0	1363643..1365406	+	587	42526837	-	TDE1329	-	AAA family ATPase
1319	 38.38	0	1365519..1365974	+	151	42526838	-	TDE1330	-	transcriptional regulator NrdR
1320	 43.58	+1	1366008..1368134	+	708	42526839	nrdD	TDE1331	-	anaerobic ribonucleoside triphosphate reductase
1321	 37.93	0	1368182..1369138	+	318	42526840	-	TDE1332	-	hflK protein, putative
1322	 38.12	0	1369144..1370208	+	354	42526841	-	TDE1333	-	hflC protein, putative
1323	 41.78	0	1370284..1370934	+	216	42526842	-	TDE1334	-	hypothetical protein
1324	 35.10	0	1370956..1372428	+	490	42526843	-	TDE1335	-	alginate O-acetylation protein, putative
1325	 34.98	0	1372443..1373840	+	465	42526844	-	TDE1336	-	hypothetical protein
1326	 38.04	0	1373856..1374896	-	346	42526845	-	TDE1337	-	hypothetical protein
1327	 39.77	0	1375029..1375883	+	284	42526846	ispE	TDE1338	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase
1328	 41.49	0	1375947..1376228	+	93	42526847	-	TDE1339	-	stage V sporulation protein G
1329	 39.78	0	1376457..1377092	+	211	42526848	-	TDE1340	-	50S ribosomal protein L25/general stress protein Ctc
1330	 37.67	0	1377203..1378585	+	460	42526849	-	TDE1341	-	hypothetical protein
1331	 37.89	0	1378582..1380621	+	679	42526850	-	TDE1342	-	hypothetical protein
1332	 39.54	0	1380686..1382296	+	536	42526851	-	TDE1343	-	trypsin domain/PDZ domain-containing protein
1333	 35.04	0	1382532..1383410	+	292	42526852	-	TDE1344	-	hypothetical protein
1334	 39.37	0	1383579..1385366	+	595	42526853	dnaG	TDE1345	-	DNA primase
1335	 39.46	0	1385359..1387218	+	619	42526854	-	TDE1346	-	RNA polymerase sigma factor RpoD
1336	 37.92	0	1387265..1388092	+	275	42526855	-	TDE1347	-	hypothetical protein
1337	 34.62	0	1388473..1389408	+	311	42526856	-	TDE1348	-	TPR domain-containing protein
1338	 43.48	+1	1389426..1390460	+	344	42526857	mreB	TDE1349	-	rod shape-determining protein MreB
1339	 36.34	0	1390467..1391330	+	287	42526858	mreC	TDE1350	-	rod shape-determining protein MreC
1340	 30.83	-1	1391335..1391853	+	172	42526859	mreD	TDE1351	-	rod shape-determining protein MreD
1341	 41.10	0	1391840..1393693	+	617	42526860	-	TDE1352	-	penicillin-binding protein
1342	 35.10	0	1393690..1394991	+	433	42526861	rodA	TDE1353	-	rod shape-determining protein RodA
1343	 35.83	0	1395026..1395265	+	79	42526862	-	TDE1354	-	hypothetical protein
1344	 30.68	-1	1395249..1395587	+	112	42526863	-	TDE1355	-	hypothetical protein
1345	 39.16	0	1395764..1396759	-	331	42526864	-	TDE1356	-	putative lipoprotein
1346	 39.96	0	1396835..1397890	+	351	42526865	galM	TDE1357	-	aldose 1-epimerase
1347	 30.30	-1	1397872..1397970	+	32	42526866	-	TDE1358	-	hypothetical protein
1348	 32.02	0	1397887..1399254	-	455	42526867	-	TDE1359	-	hypothetical protein
1349	 40.92	0	1399437..1400741	+	434	42526868	-	TDE1360	-	xanthine/uracil permease family protein
1350	 35.69	0	1400828..1401166	+	112	42526869	-	TDE1361	-	hypothetical protein
1351	 38.80	0	1401132..1404203	+	1023	42526870	-	TDE1362	-	hypothetical protein
1352	 41.18	0	1404216..1404725	-	169	42526871	-	TDE1363	-	nitroreductase family protein
1353	 43.22	+1	1404903..1407632	+	909	42526872	valS	TDE1364	-	valyl-tRNA synthetase
1354	 29.53	-1	1407895..1408473	+	192	42526873	-	TDE1365	-	TetR family transcriptional regulator
1355	 23.54	-2	1408498..1409079	+	193	42526874	-	TDE1366	-	CDP-alcohol phosphatidyltransferase family protein
1356	 34.64	0	1409117..1409500	+	127	42526875	-	TDE1367	-	glyoxalase family protein
1357	 33.33	0	1409517..1409885	-	122	42526876	-	TDE1368	-	hypothetical protein
1358	 42.74	0	1409894..1411882	-	662	42526877	uvrB	TDE1369	-	excinuclease ABC subunit B
1359	 39.03	0	1411884..1413374	-	496	42526878	-	TDE1370	-	YjeF-related protein
1360	 40.81	0	1413388..1415259	-	623	42526879	-	TDE1371	-	RNB-like family protein
1361	 34.65	0	1415323..1416987	-	554	42526880	-	TDE1372	-	hypothetical protein
1362	 35.29	0	1417269..1417931	-	220	42526881	-	TDE1373	-	HD domain-containing protein
1363	 36.19	0	1417984..1418088	-	34	42526882	-	TDE1374	-	hypothetical protein
1364	 37.89	0	1418221..1418703	+	160	42526883	coaD	TDE1375	-	pantetheine-phosphate adenylyltransferase
1365	 34.30	0	1418726..1419139	+	137	42526884	-	TDE1376	-	hypothetical protein
1366	 29.87	-1	1419173..1419922	-	249	42526885	-	TDE1377	-	hypothetical protein
1367	 26.53	-1	1419900..1420046	-	48	42526886	-	TDE1378	-	hypothetical protein
1368	 38.91	0	1420104..1420748	-	214	42526887	-	TDE1379	-	hypothetical protein
1369	 40.58	0	1420823..1421374	-	183	42526888	-	TDE1380	-	hypothetical protein
1370	 40.61	0	1421378..1421995	-	205	42526889	atpE	TDE1381	-	V-type ATP synthase subunit E
1371	 43.22	+1	1422140..1422493	+	117	42526890	-	TDE1382	-	ArsR family transcriptional regulator
1372	 47.98	+1	1422441..1422911	+	156	42526891	-	TDE1383	-	hypothetical protein
1373	 41.93	0	1422905..1424836	+	643	42526892	cadA	TDE1384	-	cadmium-translocating P-type ATPase
1374	 35.19	0	1424883..1424990	-	35	42526893	-	TDE1385	-	hypothetical protein
1375	 35.89	0	1425081..1426916	+	611	42526894	-	TDE1386	-	methyl-accepting chemotaxis protein
1376	 36.38	0	1426905..1427822	-	305	42526895	-	TDE1387	-	RNA pseudouridylate synthase family protein
1377	 39.20	0	1427896..1428372	+	158	42526896	-	TDE1388	-	hypothetical protein
1378	 34.91	0	1428378..1429835	+	485	42526897	-	TDE1389	-	hypothetical protein
1379	 36.52	0	1429832..1431118	+	428	42526898	-	TDE1390	-	hypothetical protein
1380	 38.07	0	1431115..1432149	+	344	42526899	-	TDE1391	-	NQR2/RnfD/RnfE family protein
37.25	MEAN

5.76	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.