IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.25   STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1222	 44.52	+1	1265443..1267122	-	559	42526741	-	TDE1232	-	hypothetical protein
1223	 39.76	0	1267343..1267669	+	108	42526742	-	TDE1233	-	hypothetical protein
1224	 33.63	0	1267721..1269406	-	561	42526743	-	TDE1234	-	hypothetical protein
1225	 39.22	0	1269516..1269617	+	33	42526744	-	TDE1235	-	hypothetical protein
1226	 43.69	+1	1269626..1270378	+	250	42526745	tpiA	TDE1236	-	triosephosphate isomerase
1227	 33.88	0	1270508..1270876	+	122	42526746	-	TDE1237	-	hypothetical protein
1228	 41.31	0	1270955..1271305	+	116	42526747	secG	TDE1238	-	preprotein translocase subunit SecG
1229	 27.89	-1	1271307..1271453	-	48	42526748	-	TDE1239	-	hypothetical protein
1230	 42.30	0	1271520..1272422	+	300	42526749	-	TDE1240	-	PhoH family protein
1231	 36.63	0	1272409..1274712	+	767	42526750	-	TDE1241	-	HD domain-containing protein
1232	 35.47	0	1274705..1275172	+	155	42526751	-	TDE1242	-	putative metalloprotease
1233	 38.35	0	1275175..1275951	+	258	42526752	tlyC	TDE1243	-	hemolysin C
1234	 39.76	0	1275963..1277939	+	658	42526753	-	TDE1244	-	TPR domain-containing protein
1235	 39.39	0	1277995..1278984	-	329	42526754	-	TDE1245	-	hypothetical protein
1236	 47.77	+1	1279179..1281707	+	842	42526755	-	TDE1246	-	putative lipoprotein
1237	 52.84	+2	1281763..1282485	+	240	42526756	-	TDE1247	-	hypothetical protein
1238	 41.38	0	1282736..1283680	+	314	42526757	-	TDE1248	-	hypothetical protein
1239	 33.33	0	1283665..1284600	+	311	42526758	-	TDE1249	-	hypothetical protein
1240	 37.24	0	1284593..1285591	+	332	42526759	-	TDE1250	-	batA protein, putative
1241	 36.02	0	1285588..1286556	+	322	42526760	-	TDE1251	-	batB protein, putative
1242	 30.73	-1	1286540..1287154	+	204	42526761	-	TDE1252	-	putative lipoprotein
1243	 34.17	0	1287103..1288533	+	476	42526762	-	TDE1253	-	hypothetical protein
1244	 40.94	0	1288551..1289063	+	170	42526763	-	TDE1254	-	Smr domain-containing protein
1245	 28.93	-1	1289067..1289747	-	226	42526764	-	TDE1255	-	hypothetical protein
1246	 35.96	0	1289791..1290969	-	392	42526765	-	TDE1256	-	HD domain-containing protein
1247	 30.87	-1	1291018..1291830	+	270	42526766	-	TDE1257	-	hypothetical protein
1248	 38.64	0	1291878..1292273	-	131	42526767	-	TDE1258	-	grdX protein
1249	 44.14	+1	1292336..1293760	-	474	42526768	-	TDE1259	-	amino acid carrier family protein
1250	 37.67	0	1294168..1295736	+	522	42526769	-	TDE1260	-	cholinephosphate cytidylyltransferase/choline kinase
1251	 41.11	0	1295733..1297301	+	522	42526770	-	TDE1261	-	choline/carnitine/betaine transporter family protein
1252	 25.00	-2	1297303..1297422	-	39	42526771	-	TDE1262	-	hypothetical protein
1253	 32.01	0	1297444..1298196	+	250	42526772	-	TDE1263	-	hypothetical protein
1254	 34.04	0	1298242..1299366	-	374	42526773	-	TDE1264	-	hypothetical protein
1255	 43.13	+1	1299363..1300526	-	387	42526774	ispG	TDE1265	-	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
1256	 45.87	+1	1300578..1301678	-	366	42526775	purM	TDE1266	-	phosphoribosylaminoimidazole synthetase
1257	 44.14	+1	1301717..1303030	-	437	42526776	purD	TDE1267	-	phosphoribosylamine--glycine ligase
1258	 29.57	-1	1303110..1303880	-	256	42526777	tdeIR	TDE1268	-	type II restriction endonuclease TdeI
1259	 31.88	0	1303923..1304612	-	229	42526778	-	TDE1269	-	hypothetical protein
1260	 34.94	0	1304667..1305101	-	144	42526779	-	TDE1270	-	hypothetical protein
1261	 34.67	0	1305119..1306090	-	323	42526780	-	TDE1271	-	oligopeptide/dipeptide ABC transporter, ATP-binding protein
1262	 37.79	0	1306080..1307066	-	328	42526781	-	TDE1272	-	oligopeptide/dipeptide ABC transporter, ATP-binding protein
1263	 34.46	0	1307119..1308714	-	531	42526782	-	TDE1273	-	oligopeptide/dipeptide ABC transporter, peptide-binding protein
1264	 33.66	0	1308733..1309650	-	305	42526783	-	TDE1274	-	oligopeptide/dipeptide ABC transporter, permease protein
1265	 34.07	0	1309660..1310613	-	317	42526784	-	TDE1275	-	oligopeptide/dipeptide ABC transporter, permease protein
1266	 20.43	-2	1310617..1310709	-	30	42526785	-	TDE1276	-	hypothetical protein
1267	 44.47	+1	1310821..1312302	+	493	42526786	-	TDE1277	-	Fe-hydrogenase large subunit family protein
1268	 47.06	+1	1312318..1312878	-	186	42526787	-	TDE1278	-	hypothetical protein
1269	 47.50	+1	1312905..1315205	-	766	42526788	purL	TDE1279	-	phosphoribosylformylglycinamidine synthase II
1270	 36.61	0	1315840..1316541	-	233	42526789	-	TDE1280	-	hypothetical protein
1271	 30.40	-1	1316640..1316912	+	90	42526790	-	TDE1281	-	hypothetical protein
1272	 25.55	-2	1316941..1317531	+	196	42526791	-	TDE1282	-	hypothetical protein
1273	 37.99	0	1317543..1318853	+	436	42526792	-	TDE1283	-	extracellular solute-binding lipoprotein, putative
1274	 35.03	0	1318860..1320983	+	707	42526793	-	TDE1284	-	methyl-accepting chemotaxis protein, putative
1275	 39.33	0	1321064..1322131	+	355	42526794	-	TDE1285	-	flagellar motor switch protein FliG, putative
1276	 42.73	0	1322197..1322877	+	226	42526795	-	TDE1286	-	TPR domain-containing protein
1277	 40.05	0	1322878..1326345	+	1155	42526796	mfd	TDE1287	-	transcription-repair coupling factor
1278	 20.71	-2	1326457..1327335	+	292	42526797	-	TDE1288	-	CAAX amino terminal protease family protein
1279	 24.79	-2	1327454..1327570	+	38	42526798	-	TDE1289	-	hypothetical protein
1280	 35.47	0	1327539..1328708	+	389	42526799	-	TDE1290	-	hypothetical protein
1281	 40.62	0	1328728..1329303	-	191	42526800	-	TDE1291	-	HD domain-containing protein
1282	 41.44	0	1329404..1330711	-	435	42526801	-	TDE1292	-	TldD/PmbA family protein
1283	 45.77	+1	1330711..1332093	-	460	42526802	-	TDE1293	-	TldD/PmbA family protein
1284	 39.33	0	1332145..1332411	-	88	42526803	ptsH	TDE1294	-	phosphocarrier protein HPr
1285	 36.08	0	1333554..1333844	-	96	42526804	-	TDE1296	-	ribosomal subunit interface protein, putative
1286	 41.94	0	1333967..1334872	-	301	42526805	-	TDE1297	-	LysM/M23/M37 peptidase
1287	 34.83	0	1334872..1335405	-	177	42526806	-	TDE1298	-	cyclic nucleotide binding domain-containing protein
1288	 36.68	0	1335507..1336703	-	398	42526807	-	TDE1299	-	hypothetical protein
1289	 36.91	0	1336700..1337509	-	269	42526808	-	TDE1300	-	hypothetical protein
1290	 41.46	0	1337521..1339206	-	561	42526809	recN	TDE1301	-	DNA repair protein RecN
1291	 35.19	0	1339303..1339734	-	143	42526810	-	TDE1302	-	hemerythrin family protein
1292	 30.73	-1	1339739..1339930	-	63	42526811	-	TDE1303	-	hypothetical protein
1293	 30.72	-1	1339856..1340008	+	50	42526812	-	TDE1304	-	hypothetical protein
1294	 39.73	0	1340240..1340458	+	72	42526813	-	TDE1305	-	DNA-binding protein
1295	 34.04	0	1340542..1340964	-	140	42526814	-	TDE1306	-	hypothetical protein
1296	 34.68	0	1341094..1342581	+	495	42526815	-	TDE1307	-	hypothetical protein
1297	 46.65	+1	1342603..1344630	+	675	42526816	tkt	TDE1308	-	transketolase
1298	 39.78	0	1344675..1346102	+	475	42526817	-	TDE1309	-	modulator of DNA gyrase family protein
1299	 39.65	0	1346102..1347400	+	432	42526818	-	TDE1310	-	modulator of DNA gyrase family protein
1300	 29.97	-1	1347511..1349115	+	534	42526819	-	TDE1311	-	ABC transporter, ATP-binding/permease protein
1301	 42.83	0	1349228..1350775	+	515	42526820	-	TDE1312	-	hypothetical protein
1302	 35.94	0	1350790..1351326	+	178	42526821	-	TDE1313	-	signal peptidase I
1303	 41.17	0	1351314..1353176	+	620	42526822	-	TDE1314	-	penicillin-binding protein
1304	 35.92	0	1353157..1354893	+	578	42526823	-	TDE1315	-	hypothetical protein
1305	 28.92	-1	1354881..1355084	+	67	42526824	-	TDE1316	-	hypothetical protein
1306	 34.34	0	1355060..1355554	-	164	42526825	-	TDE1317	-	hypothetical protein
1307	 34.89	0	1355587..1356741	+	384	42526826	-	TDE1318	-	hypothetical protein
1308	 34.70	0	1356738..1357910	+	390	42526827	-	TDE1319	-	hypothetical protein
1309	 37.71	0	1357904..1359478	+	524	42526828	-	TDE1320	-	ComEC/Rec2-related protein
1310	 42.20	0	1359475..1360083	+	202	42526829	-	TDE1321	-	hypothetical protein
1311	 29.57	-1	1360110..1360826	-	238	42526830	-	TDE1322	-	hypothetical protein
1312	 32.56	0	1360900..1361028	+	42	42526831	-	TDE1323	-	hypothetical protein
1313	 41.52	0	1361005..1361700	-	231	42526832	-	TDE1324	-	hypothetical protein
1314	 33.33	0	1361710..1361811	-	33	42526833	-	TDE1325	-	hypothetical protein
1315	 38.24	0	1361801..1361902	+	33	42526834	-	TDE1326	-	hypothetical protein
1316	 33.42	0	1361879..1363039	-	386	42526835	-	TDE1327	-	hypothetical protein
1317	 36.51	0	1363052..1363492	-	146	42526836	-	TDE1328	-	hypothetical protein
1318	 42.52	0	1363643..1365406	+	587	42526837	-	TDE1329	-	AAA family ATPase
1319	 38.38	0	1365519..1365974	+	151	42526838	-	TDE1330	-	transcriptional regulator NrdR
1320	 43.58	+1	1366008..1368134	+	708	42526839	nrdD	TDE1331	-	anaerobic ribonucleoside triphosphate reductase
1321	 37.93	0	1368182..1369138	+	318	42526840	-	TDE1332	-	hflK protein, putative
37.25	MEAN

5.76	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.