IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.25   STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
986	 39.84	0	1020678..1022507	+	609	42526505	-	TDE0994	-	hypothetical protein
987	 22.96	-2	1022532..1022666	-	44	42526506	-	TDE0995	-	hypothetical protein
988	 40.93	0	1022625..1024058	+	477	42526507	-	TDE0996	-	hypothetical protein
989	 41.30	0	1024132..1025373	-	413	42526508	gdhA	TDE0997	-	glutamate dehydrogenase
990	 33.80	0	1025342..1025554	+	70	42526509	-	TDE0998	-	hypothetical protein
991	 42.53	0	1026010..1026846	+	278	42526510	-	TDE0999	-	formate/nitrite transporter
992	 44.14	+1	1026903..1027781	+	292	42526511	-	TDE1000	-	3-hydroxyacid dehydrogenase family protein
993	 44.40	+1	1027793..1028497	+	234	42526512	pyrE	TDE1001	-	orotate phosphoribosyltransferase
994	 36.22	0	1028535..1029227	-	230	42526513	-	TDE1002	-	hypothetical protein
995	 26.67	-1	1029251..1029385	+	44	42526514	-	TDE1003	-	hypothetical protein
996	 44.02	+1	1029366..1030226	-	286	42526515	-	TDE1004	-	flagellar filament core protein
997	 28.57	-1	1030346..1030555	+	69	42526516	-	TDE1005	-	hypothetical protein
998	 41.94	0	1030567..1031379	+	270	42526517	flgG-1	TDE1006	-	flagellar basal-body rod protein FlgG
999	 47.17	+1	1031401..1032195	+	264	42526518	flgG	TDE1007	-	flagellar basal body rod protein FlgG
1000	 44.28	+1	1032246..1032866	+	206	42526519	-	TDE1008	-	flagellar protein, putative
1001	 40.40	0	1033093..1035186	-	697	42526520	-	TDE1009	-	methyl-accepting chemotaxis protein
1002	 46.46	+1	1035367..1038231	+	954	42526521	uvrA	TDE1010	-	excinuclease ABC, A subunit
1003	 34.26	0	1038241..1041462	+	1073	42526522	-	TDE1011	-	hypothetical protein
1004	 43.44	+1	1041533..1043986	+	817	42526523	-	TDE1012	-	tex protein, putative
1005	 30.43	-1	1044067..1044480	-	137	42526524	-	TDE1013	-	hemerythrin-related protein
1006	 35.88	0	1044537..1045634	-	365	42526525	-	TDE1014	-	hypothetical protein
1007	 34.80	0	1045456..1045659	+	67	42526526	-	TDE1015	-	hypothetical protein
1008	 44.03	+1	1048075..1049271	+	398	42526527	xseA	TDE1017	-	exodeoxyribonuclease VII, large subunit
1009	 34.73	0	1049367..1049795	+	142	42526528	-	TDE1018	-	hypothetical protein
1010	 38.64	0	1049792..1051639	-	615	42526529	-	TDE1019	-	dicarboxylate transporter, DctM subunit, putative
1011	 37.41	0	1051655..1052683	-	342	42526530	-	TDE1020	-	dicarboxylate transporter, periplasmic dicarboxylate-binding protein, putative
1012	 40.10	0	1052680..1053654	-	324	42526531	-	TDE1021	-	putative lipoprotein
1013	 31.75	0	1054002..1055078	-	358	42526532	-	TDE1022	-	ISTde2, transposase
1014	 40.24	0	1055263..1055682	+	139	42526533	mamA	TDE1023	-	methylaspartate mutase subunit S
1015	 44.20	+1	1055715..1057094	+	459	42526534	-	TDE1024	-	hypothetical protein
1016	 42.86	0	1057241..1057429	+	62	42526535	rpmF	TDE1025	-	50S ribosomal protein L32
1017	 37.97	0	1057442..1057678	+	78	42526536	acpP	TDE1026	-	acyl carrier protein
1018	 42.11	0	1057702..1058442	+	246	42526537	rnc	TDE1027	-	ribonuclease III
1019	 39.13	0	1058584..1058721	+	45	42526538	-	TDE1028	-	hypothetical protein
1020	 39.46	0	1058714..1059154	+	146	42526539	-	TDE1029	-	Hsp20/alpha crystallin family protein
1021	 36.40	0	1059254..1060102	+	282	42526540	-	TDE1030	-	hypothetical protein
1022	 25.00	-2	1060150..1060245	+	31	42526541	-	TDE1031	-	hypothetical protein
1023	 40.51	0	1060294..1061157	+	287	42526542	-	TDE1032	-	hypothetical protein
1024	 44.84	+1	1061209..1062555	+	448	42526543	-	TDE1033	-	polyA polymerase family protein
1025	 37.94	0	1062594..1063526	+	310	42526544	-	TDE1034	-	magnesium and cobalt transporter, putative
1026	 40.67	0	1063594..1063920	+	108	42526545	-	TDE1035	-	PadR family transcriptional regulator
1027	 36.02	0	1063945..1064613	+	222	42526546	-	TDE1036	-	hypothetical protein
1028	 32.02	0	1064610..1065521	+	303	42526547	-	TDE1037	-	hypothetical protein
1029	 40.71	0	1065495..1067066	-	523	42526548	-	TDE1038	-	hypothetical protein
1030	 41.44	0	1067212..1068075	+	287	42526549	-	TDE1039	-	riboflavin biosynthesis protein, putative
1031	 40.74	0	1068079..1068348	+	89	42526550	rpsO	TDE1040	-	30S ribosomal protein S15
1032	 45.73	+1	1068464..1070560	+	698	42526551	pnp	TDE1041	-	polynucleotide phosphorylase/polyadenylase
1033	 47.13	+1	1070632..1071066	+	144	42526552	dut	TDE1042	-	deoxyuridine 5'triphosphate nucleotidohydrolase
1034	 35.98	0	1071085..1072218	+	377	42526553	-	TDE1043	-	hypothetical protein
1035	 35.38	0	1072215..1073288	+	357	42526554	-	TDE1044	-	hypothetical protein
1036	 34.29	0	1073380..1073799	+	139	42526555	-	TDE1045	-	hypothetical protein
1037	 33.90	0	1073786..1074136	+	116	42526556	-	TDE1046	-	hypothetical protein
1038	 48.53	+1	1074237..1074611	+	124	42526557	rpsL	TDE1047	-	30S ribosomal protein S12
1039	 46.92	+1	1074622..1075092	+	156	42526558	rpsG	TDE1048	-	30S ribosomal protein S7
1040	 44.11	+1	1075427..1077514	+	695	42526559	fusA-2	TDE1049	-	elongation factor G
1041	 40.20	0	1077527..1078210	+	227	42526560	-	TDE1050	-	hypothetical protein
1042	 35.09	0	1078302..1078586	-	94	42526561	-	TDE1051	-	hypothetical protein
1043	 45.28	+1	1078802..1078960	-	52	42526562	-	TDE1052	-	rubredoxin
1044	 37.51	0	1079020..1080816	-	598	42526563	-	TDE1053	-	putative lipoprotein
1045	 37.04	0	1080980..1083058	+	692	42526564	-	TDE1054	-	methyl-accepting chemotaxis protein
1046	 40.00	0	1083072..1084421	-	449	42526565	-	TDE1055	-	MATE efflux family protein
1047	 48.84	+2	1085350..1085955	+	201	42526566	-	TDE1056	-	hypothetical protein
1048	 43.97	+1	1086195..1086335	-	46	42526567	-	TDE1057	-	hypothetical protein
1049	 37.78	0	1086322..1086456	-	44	42526568	-	TDE1058	-	hypothetical protein
1050	 30.56	-1	1086588..1086695	-	35	42526569	-	TDE1059	-	hypothetical protein
1051	 34.07	0	1086659..1086793	+	44	42526570	-	TDE1060	-	hypothetical protein
1052	 37.59	0	1086786..1088570	+	594	42526571	-	TDE1061	-	ABC transporter ATP-binding protein/peptidase
1053	 38.98	0	1088570..1090447	+	625	42526572	-	TDE1062	-	ABC transporter ATP-binding protein
1054	 44.58	+1	1090647..1093028	+	793	42526573	metG	TDE1063	-	methionyl-tRNA synthetase
1055	 36.48	0	1093121..1093756	-	211	42526574	-	TDE1064	-	hypothetical protein
1056	 34.36	0	1093753..1094241	-	162	42526575	-	TDE1065	-	hypothetical protein
1057	 40.48	0	1094425..1094634	-	69	42526576	-	TDE1066	-	hypothetical protein
1058	 42.49	0	1094634..1095791	-	385	42526577	-	TDE1067	-	oligopeptide/dipeptide ABC transporter, ATP-binding protein
1059	 41.99	0	1095784..1096776	-	330	42526578	-	TDE1068	-	oligopeptide/dipeptide ABC transporter, ATP-binding protein
1060	 41.30	0	1096773..1097789	-	338	42526579	-	TDE1069	-	oligopeptide/dipeptide ABC transporter, permease protein
1061	 37.13	0	1097790..1098815	-	341	42526580	-	TDE1070	-	oligopeptide/dipeptide ABC transporter, permease protein
1062	 41.55	0	1098903..1100678	-	591	42526581	oppA	TDE1071	-	peptide ABC transporter, peptide-binding protein OppA
1063	 43.73	+1	1100881..1103496	+	871	42526582	-	TDE1072	-	putative lipoprotein
1064	 40.06	0	1103655..1104695	+	346	42526583	-	TDE1073	-	oligopeptide/dipeptide ABC transporter, permease protein
1065	 39.28	0	1104695..1106089	+	464	42526584	-	TDE1074	-	oligopeptide/dipeptide ABC transporter, permease protein
1066	 44.27	+1	1106102..1107079	+	325	42526585	-	TDE1075	-	oligopeptide/dipeptide ABC transporter, ATP-binding protein
1067	 44.96	+1	1107076..1108116	+	346	42526586	-	TDE1076	-	oligopeptide/dipeptide ABC transporter, ATP-binding protein
1068	 32.92	0	1108535..1109740	+	401	42526587	-	TDE1077	-	hypothetical protein
1069	 41.48	0	1109879..1111105	+	408	42526588	-	TDE1078	-	metallo-beta-lactamase family protein
1070	 40.92	0	1111260..1111865	+	201	42526589	-	TDE1079	-	DNA-binding protein/PTS system, IIA component
1071	 37.87	0	1111878..1112759	+	293	42526590	ksgA	TDE1080	-	dimethyladenosine transferase
1072	 40.20	0	1112779..1113288	+	169	42526591	-	TDE1081	-	hypothetical protein
1073	 38.82	0	1113275..1114312	+	345	42526592	-	TDE1082	-	ribosomal large subunit pseudouridine synthase D
1074	 38.42	0	1114306..1115091	+	261	42526593	-	TDE1083	-	RNA pseudouridylate synthase
1075	 40.06	0	1115024..1116376	-	450	42526594	-	TDE1084	-	folylpolyglutamate synthetase, putative
1076	 39.99	0	1116468..1117910	+	480	42526595	murC	TDE1085	-	UDP-N-acetylmuramate--L-alanine ligase
1077	 36.22	0	1117926..1118792	+	288	42526596	-	TDE1086	-	hypothetical protein
1078	 36.52	0	1118810..1119373	+	187	42526597	cmk	TDE1087	-	cytidylate kinase
1079	 32.60	0	1119365..1120045	-	226	42526598	-	TDE1088	-	hypothetical protein
1080	 36.31	0	1120060..1121034	-	324	42526599	-	TDE1089	-	hypothetical protein
1081	 43.17	+1	1121246..1123003	+	585	42526600	thrS	TDE1090	-	threonyl-tRNA synthetase
1082	 38.87	0	1123107..1123865	-	252	42526601	-	TDE1091	-	hypothetical protein
1083	 39.64	0	1123896..1127255	-	1119	42526602	-	TDE1092	-	hypothetical protein
1084	 35.18	0	1127514..1128218	+	234	42526603	-	TDE1093	-	hypothetical protein
1085	 38.72	0	1128205..1129782	+	525	42526604	-	TDE1094	-	hypothetical protein
37.25	MEAN

5.76	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.