IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.25   STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
961	 41.13	0	992653..993216	-	187	42526480	efp	TDE0968	-	translation elongation factor P
962	 34.39	0	993400..994635	+	411	42526481	-	TDE0969	-	hypothetical protein
963	 32.44	0	994909..995244	+	111	42526482	-	TDE0970	-	hypothetical protein
964	 41.57	0	995319..997091	+	590	42526483	argS	TDE0971	-	arginyl-tRNA synthetase
965	 39.18	0	997167..998021	+	284	42526484	-	TDE0972	-	comF-related protein
966	 43.51	+1	998030..998707	-	225	42526485	radC	TDE0973	-	DNA repair protein RadC
967	 46.08	+1	998834..998935	+	33	42526486	-	TDE0974	-	hypothetical protein
968	 38.57	0	999061..999939	+	292	42526487	-	TDE0975	-	hypothetical protein
969	 43.00	0	1000166..1000558	+	130	42526488	-	TDE0976	-	hypothetical protein
970	 51.83	+2	1000555..1001700	+	381	42526489	-	TDE0977	-	hypothetical protein
971	 49.06	+2	1002008..1002484	+	158	42526490	-	TDE0978	-	hypothetical protein
972	 38.48	0	1002600..1004036	-	478	42526491	-	TDE0979	-	penicillin binding protein
973	 43.95	+1	1004069..1005490	-	473	42526492	asnC	TDE0980	-	asparaginyl-tRNA synthetase
974	 36.25	0	1005636..1006595	+	319	42526493	-	TDE0981	-	hypothetical protein
975	 45.05	+1	1006617..1008392	+	591	42526494	-	TDE0982	-	dihydroorotate dehydrogenase/oxidoreductase, FAD-binding
976	 39.80	0	1009614..1011113	+	499	42526495	-	TDE0984	-	oligopeptide/dipeptide ABC transporter, permease protein, putative
977	 42.00	0	1011177..1013114	+	645	42526496	-	TDE0985	-	oligopeptide/dipeptide ABC transporter, periplasmic peptide-binding protein, putative
978	 42.10	0	1013201..1014181	+	326	42526497	-	TDE0986	-	oligopeptide/dipeptide ABC transporter, ATP-binding protein
979	 43.89	+1	1014181..1015137	+	318	42526498	-	TDE0987	-	oligopeptide/dipeptide ABC transporter, ATP-binding protein
980	 38.99	0	1015222..1017165	+	647	42526499	-	TDE0988	-	oligopeptide/dipeptide ABC transporter, peptide-binding protein
981	 35.02	0	1017272..1017508	+	78	42526500	-	TDE0989	-	hypothetical protein
982	 37.04	0	1017538..1017888	+	116	42526501	-	TDE0990	-	hypothetical protein
983	 36.46	0	1017964..1018155	-	63	42526502	rpmB	TDE0991	-	ribosomal protein L28
984	 39.13	0	1018411..1019100	-	229	42526503	-	TDE0992	-	5-formyltetrahydrofolate cyclo-ligase family protein
985	 37.59	0	1019072..1020505	-	477	42526504	-	TDE0993	-	putative lipoprotein
986	 39.84	0	1020678..1022507	+	609	42526505	-	TDE0994	-	hypothetical protein
987	 22.96	-2	1022532..1022666	-	44	42526506	-	TDE0995	-	hypothetical protein
988	 40.93	0	1022625..1024058	+	477	42526507	-	TDE0996	-	hypothetical protein
989	 41.30	0	1024132..1025373	-	413	42526508	gdhA	TDE0997	-	glutamate dehydrogenase
990	 33.80	0	1025342..1025554	+	70	42526509	-	TDE0998	-	hypothetical protein
991	 42.53	0	1026010..1026846	+	278	42526510	-	TDE0999	-	formate/nitrite transporter
992	 44.14	+1	1026903..1027781	+	292	42526511	-	TDE1000	-	3-hydroxyacid dehydrogenase family protein
993	 44.40	+1	1027793..1028497	+	234	42526512	pyrE	TDE1001	-	orotate phosphoribosyltransferase
994	 36.22	0	1028535..1029227	-	230	42526513	-	TDE1002	-	hypothetical protein
995	 26.67	-1	1029251..1029385	+	44	42526514	-	TDE1003	-	hypothetical protein
996	 44.02	+1	1029366..1030226	-	286	42526515	-	TDE1004	-	flagellar filament core protein
997	 28.57	-1	1030346..1030555	+	69	42526516	-	TDE1005	-	hypothetical protein
998	 41.94	0	1030567..1031379	+	270	42526517	flgG-1	TDE1006	-	flagellar basal-body rod protein FlgG
999	 47.17	+1	1031401..1032195	+	264	42526518	flgG	TDE1007	-	flagellar basal body rod protein FlgG
1000	 44.28	+1	1032246..1032866	+	206	42526519	-	TDE1008	-	flagellar protein, putative
1001	 40.40	0	1033093..1035186	-	697	42526520	-	TDE1009	-	methyl-accepting chemotaxis protein
1002	 46.46	+1	1035367..1038231	+	954	42526521	uvrA	TDE1010	-	excinuclease ABC, A subunit
1003	 34.26	0	1038241..1041462	+	1073	42526522	-	TDE1011	-	hypothetical protein
1004	 43.44	+1	1041533..1043986	+	817	42526523	-	TDE1012	-	tex protein, putative
1005	 30.43	-1	1044067..1044480	-	137	42526524	-	TDE1013	-	hemerythrin-related protein
1006	 35.88	0	1044537..1045634	-	365	42526525	-	TDE1014	-	hypothetical protein
1007	 34.80	0	1045456..1045659	+	67	42526526	-	TDE1015	-	hypothetical protein
1008	 44.03	+1	1048075..1049271	+	398	42526527	xseA	TDE1017	-	exodeoxyribonuclease VII, large subunit
1009	 34.73	0	1049367..1049795	+	142	42526528	-	TDE1018	-	hypothetical protein
1010	 38.64	0	1049792..1051639	-	615	42526529	-	TDE1019	-	dicarboxylate transporter, DctM subunit, putative
1011	 37.41	0	1051655..1052683	-	342	42526530	-	TDE1020	-	dicarboxylate transporter, periplasmic dicarboxylate-binding protein, putative
1012	 40.10	0	1052680..1053654	-	324	42526531	-	TDE1021	-	putative lipoprotein
1013	 31.75	0	1054002..1055078	-	358	42526532	-	TDE1022	-	ISTde2, transposase
1014	 40.24	0	1055263..1055682	+	139	42526533	mamA	TDE1023	-	methylaspartate mutase subunit S
1015	 44.20	+1	1055715..1057094	+	459	42526534	-	TDE1024	-	hypothetical protein
1016	 42.86	0	1057241..1057429	+	62	42526535	rpmF	TDE1025	-	50S ribosomal protein L32
1017	 37.97	0	1057442..1057678	+	78	42526536	acpP	TDE1026	-	acyl carrier protein
1018	 42.11	0	1057702..1058442	+	246	42526537	rnc	TDE1027	-	ribonuclease III
1019	 39.13	0	1058584..1058721	+	45	42526538	-	TDE1028	-	hypothetical protein
1020	 39.46	0	1058714..1059154	+	146	42526539	-	TDE1029	-	Hsp20/alpha crystallin family protein
1021	 36.40	0	1059254..1060102	+	282	42526540	-	TDE1030	-	hypothetical protein
1022	 25.00	-2	1060150..1060245	+	31	42526541	-	TDE1031	-	hypothetical protein
1023	 40.51	0	1060294..1061157	+	287	42526542	-	TDE1032	-	hypothetical protein
1024	 44.84	+1	1061209..1062555	+	448	42526543	-	TDE1033	-	polyA polymerase family protein
1025	 37.94	0	1062594..1063526	+	310	42526544	-	TDE1034	-	magnesium and cobalt transporter, putative
1026	 40.67	0	1063594..1063920	+	108	42526545	-	TDE1035	-	PadR family transcriptional regulator
1027	 36.02	0	1063945..1064613	+	222	42526546	-	TDE1036	-	hypothetical protein
1028	 32.02	0	1064610..1065521	+	303	42526547	-	TDE1037	-	hypothetical protein
1029	 40.71	0	1065495..1067066	-	523	42526548	-	TDE1038	-	hypothetical protein
1030	 41.44	0	1067212..1068075	+	287	42526549	-	TDE1039	-	riboflavin biosynthesis protein, putative
1031	 40.74	0	1068079..1068348	+	89	42526550	rpsO	TDE1040	-	30S ribosomal protein S15
1032	 45.73	+1	1068464..1070560	+	698	42526551	pnp	TDE1041	-	polynucleotide phosphorylase/polyadenylase
1033	 47.13	+1	1070632..1071066	+	144	42526552	dut	TDE1042	-	deoxyuridine 5'triphosphate nucleotidohydrolase
1034	 35.98	0	1071085..1072218	+	377	42526553	-	TDE1043	-	hypothetical protein
1035	 35.38	0	1072215..1073288	+	357	42526554	-	TDE1044	-	hypothetical protein
1036	 34.29	0	1073380..1073799	+	139	42526555	-	TDE1045	-	hypothetical protein
1037	 33.90	0	1073786..1074136	+	116	42526556	-	TDE1046	-	hypothetical protein
1038	 48.53	+1	1074237..1074611	+	124	42526557	rpsL	TDE1047	-	30S ribosomal protein S12
1039	 46.92	+1	1074622..1075092	+	156	42526558	rpsG	TDE1048	-	30S ribosomal protein S7
1040	 44.11	+1	1075427..1077514	+	695	42526559	fusA-2	TDE1049	-	elongation factor G
1041	 40.20	0	1077527..1078210	+	227	42526560	-	TDE1050	-	hypothetical protein
1042	 35.09	0	1078302..1078586	-	94	42526561	-	TDE1051	-	hypothetical protein
1043	 45.28	+1	1078802..1078960	-	52	42526562	-	TDE1052	-	rubredoxin
1044	 37.51	0	1079020..1080816	-	598	42526563	-	TDE1053	-	putative lipoprotein
1045	 37.04	0	1080980..1083058	+	692	42526564	-	TDE1054	-	methyl-accepting chemotaxis protein
1046	 40.00	0	1083072..1084421	-	449	42526565	-	TDE1055	-	MATE efflux family protein
1047	 48.84	+2	1085350..1085955	+	201	42526566	-	TDE1056	-	hypothetical protein
1048	 43.97	+1	1086195..1086335	-	46	42526567	-	TDE1057	-	hypothetical protein
1049	 37.78	0	1086322..1086456	-	44	42526568	-	TDE1058	-	hypothetical protein
1050	 30.56	-1	1086588..1086695	-	35	42526569	-	TDE1059	-	hypothetical protein
1051	 34.07	0	1086659..1086793	+	44	42526570	-	TDE1060	-	hypothetical protein
1052	 37.59	0	1086786..1088570	+	594	42526571	-	TDE1061	-	ABC transporter ATP-binding protein/peptidase
1053	 38.98	0	1088570..1090447	+	625	42526572	-	TDE1062	-	ABC transporter ATP-binding protein
1054	 44.58	+1	1090647..1093028	+	793	42526573	metG	TDE1063	-	methionyl-tRNA synthetase
1055	 36.48	0	1093121..1093756	-	211	42526574	-	TDE1064	-	hypothetical protein
1056	 34.36	0	1093753..1094241	-	162	42526575	-	TDE1065	-	hypothetical protein
1057	 40.48	0	1094425..1094634	-	69	42526576	-	TDE1066	-	hypothetical protein
1058	 42.49	0	1094634..1095791	-	385	42526577	-	TDE1067	-	oligopeptide/dipeptide ABC transporter, ATP-binding protein
1059	 41.99	0	1095784..1096776	-	330	42526578	-	TDE1068	-	oligopeptide/dipeptide ABC transporter, ATP-binding protein
1060	 41.30	0	1096773..1097789	-	338	42526579	-	TDE1069	-	oligopeptide/dipeptide ABC transporter, permease protein
37.25	MEAN

5.76	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.