IslandPath Analysis: Thermoplasma volcanium GSS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.87   STD DEV: 3.44
Thermoplasma volcanium GSS1, complete genome - 1..1584804
1499 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
930	 39.62	0	981501..982439	+	312	13541761	-	TVN0930	-	Zn-dependent hydrolase
931	 44.81	+1	982485..983765	+	426	13541762	-	TVN0931	-	tryptophan synthase subunit beta
932	 44.23	0	984086..985801	+	571	13541763	-	TVN0932	-	Fe-S oxidoreductase
933	 39.30	0	985839..986240	+	133	13541764	-	TVN0933	-	hypothetical protein
934	 45.18	+1	986370..986825	+	151	13541765	-	TVN0934	-	transcription regulator
935	 42.94	0	986776..987795	+	339	13541766	-	TVN0935	-	ABC-type multidrug transport system, ATPase component
936	 40.05	0	987796..988599	+	267	13541767	-	TVN0936	-	ABC transporter permease
937	 40.82	0	988703..989851	+	382	13541768	-	TVN0937	-	Fe-S oxidoreductase
938	 41.47	0	989857..990507	+	216	13541769	-	TVN0938	-	metal-dependent transcription regulator
939	 41.39	0	990514..991977	-	487	13541770	-	TVN0939	-	amino acid transporter
940	 42.61	0	992082..992372	-	96	13541771	-	TVN0940	-	hypothetical protein
941	 39.18	0	992562..993143	+	193	13541772	-	TVN0941	-	hypothetical protein
942	 38.94	0	993131..993754	-	207	13541773	-	TVN0942	-	HAD superfamily hydrolase
943	 42.37	0	993767..994552	-	261	13541774	-	TVN0943	-	molybdopterin/thiamine biosynthesis dinucleotide-utilizing protein
944	 43.06	0	994641..995648	+	335	13541775	-	TVN0944	-	putative alcohol dehydrogenase
945	 39.10	0	995673..996071	-	132	13541776	-	TVN0945	-	metal-dependent transcription regulator
946	 40.74	0	996182..996343	+	53	13541777	-	TVN0946	-	hypothetical protein
947	 46.74	+1	996521..998758	+	745	13541778	-	TVN0947	-	ATPase of the AAA+ class involved in cell division
948	 42.54	0	999061..999549	-	162	13541779	-	TVN0948	-	hypothetical protein
949	 40.81	0	999664..1000425	-	253	13541780	-	TVN0949	-	translation initiation factor IF-2B subunit delta
950	 39.73	0	1000457..1001269	-	270	13541781	-	TVN0950	-	aldose 1-epimerase
951	 42.66	0	1001389..1001742	-	117	13541782	-	TVN0951	-	hypothetical protein
952	 41.12	0	1001758..1002939	-	393	13541783	-	TVN0952	-	transposase
953	 37.46	0	1003103..1003975	+	290	13541784	-	TVN0953	-	hypothetical protein
954	 40.16	0	1004364..1005578	+	404	13541785	-	TVN0954	-	glycosyltransferase
955	 40.00	0	1005629..1006378	+	249	13541786	-	TVN0955	-	SAM-dependent methyltransferase
956	 42.08	0	1006486..1007034	-	182	13541787	-	TVN0956	-	phosphoheptose isomerase
957	 35.28	-1	1007165..1007935	+	256	13541788	-	TVN0957	-	hypothetical protein
958	 36.46	-1	1007925..1008755	+	276	13541789	-	TVN0958	-	ABC transporter permease
959	 39.86	0	1008752..1009639	+	295	13541790	-	TVN0959	-	ABC-type multidrug transport system, ATPase component
960	 39.91	0	1009839..1010750	+	303	13541791	-	TVN0960	-	glycerate dehydrogenase
961	 36.96	-1	1010767..1011675	+	302	13541792	-	TVN0961	-	hypothetical protein
962	 34.81	-1	1011780..1012727	+	315	13541793	-	TVN0962	-	hypothetical protein
963	 40.10	0	1012742..1014811	+	689	13541794	-	TVN0963	-	hypothetical protein
964	 35.57	-1	1014789..1016708	+	639	13541795	-	TVN0964	-	hypothetical protein
965	 39.77	0	1016719..1017915	-	398	13541796	-	TVN0965	-	putative inner membrane protein
966	 39.51	0	1018247..1019152	+	301	13541797	-	TVN0966	-	phosphate uptake regulator
967	 39.47	0	1019249..1019998	+	249	13541798	-	TVN0967	-	permease
968	 33.74	-2	1020030..1020524	-	164	13541799	-	TVN0968	-	hypothetical protein
969	 39.65	0	1020565..1021134	-	189	13541800	-	TVN0969	-	hypothetical protein
970	 41.19	0	1021365..1022522	-	385	13541801	-	TVN0970	-	hypothetical protein
971	 39.98	0	1022523..1023365	-	280	13541802	-	TVN0971	-	endonuclease IV
972	 43.56	0	1023371..1024084	-	237	13541803	-	TVN0972	-	transcription regulator
973	 42.81	0	1024312..1025493	+	393	13541804	-	TVN0973	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
974	 38.43	0	1025483..1026247	+	254	13541805	-	TVN0974	-	amidohydrolase
975	 39.86	0	1026250..1026954	-	234	13541806	-	TVN0975	-	alpha/beta superfamily hydrolase
976	 44.08	0	1027096..1029756	+	886	13541807	-	TVN0976	-	pyruvate phosphate dikinase
977	 39.81	0	1029778..1030194	-	138	13541808	-	TVN0977	-	DNA-binding protein
978	 40.58	0	1030250..1030594	-	114	13541809	-	TVN0978	-	ferredoxin
979	 42.30	0	1030681..1031550	+	289	13541810	-	TVN0979	-	ribokinase family sugar kinase
980	 43.10	0	1031698..1032219	+	173	13541811	-	TVN0980	-	acetyltransferase
981	 43.28	0	1032254..1033459	+	401	13541812	eno	TVN0981	-	phosphopyruvate hydratase
982	 43.32	0	1033444..1034064	+	206	13541813	-	TVN0982	-	diphthine synthase
983	 40.26	0	1034191..1034796	-	201	13541814	-	TVN0983	-	transcription regulator
984	 42.62	0	1034799..1035347	-	182	13541815	-	TVN0984	-	molecular chaperone (small heat shock protein, hsp20-related)
985	 39.67	0	1035393..1038440	-	1015	13541816	-	TVN0985	-	transporter
986	 42.66	0	1038522..1039754	+	410	13541817	-	TVN0986	-	S-adenosyl-L-homocysteine hydrolase
987	 41.78	0	1039759..1041084	-	441	13541818	-	TVN0987	-	seryl-tRNA synthetase
988	 39.26	0	1041141..1042187	-	348	13541819	-	TVN0988	-	Kef-type K+ transporter NAD-binding component
989	 40.36	0	1042450..1043445	-	331	13541820	-	TVN0989	-	tyrosyl-tRNA synthetase
990	 36.78	-1	1043574..1043834	+	86	13541821	-	TVN0990	-	lipoate-protein ligase A
991	 43.47	0	1043836..1044624	+	262	13541822	-	TVN0991	-	lipoate-protein ligase A
992	 43.20	0	1044736..1046103	+	455	13541823	-	TVN0992	-	signal recognition particle protein Srp54
993	 46.35	+1	1046096..1047286	-	396	13541824	-	TVN0993	-	geranylgeranyl reductase
994	 44.60	+1	1047273..1047485	-	70	13541825	-	TVN0994	-	ferredoxin subunit of tungsten formylmethanofuran dehydrogenase
995	 37.25	-1	1047701..1048567	-	288	13541826	-	TVN0995	-	coiled-coil protein
996	 44.88	+1	1048762..1050051	+	429	13541827	asnC	TVN0996	-	asparaginyl-tRNA synthetase
997	 41.13	0	1050098..1050802	-	234	13541828	-	TVN0997	-	hypothetical protein
998	 47.58	+1	1050816..1051826	-	336	13541829	-	TVN0998	-	pyridoxine biosynthesis protein
999	 42.84	0	1051950..1053296	+	448	13541830	-	TVN0999	-	adenylosuccinate lyase
1000	 42.64	0	1053297..1053887	+	196	13541831	-	TVN1000	-	hypothetical protein
1001	 42.72	0	1053893..1054510	-	205	13541832	-	TVN1001	-	ATPase
1002	 41.92	0	1054535..1055338	-	267	13541833	-	TVN1002	-	thiamine monophosphate kinase
1003	 42.51	0	1055578..1057059	-	493	13541834	-	TVN1003	-	single-stranded DNA-specific exonuclease
1004	 38.94	0	1057056..1058108	-	350	13541835	-	TVN1004	-	Fe-S oxidoreductase
1005	 41.80	0	1058196..1059341	+	381	13541836	-	TVN1005	-	aspartate aminotransferase
1006	 44.84	+1	1059400..1060320	+	306	13541837	-	TVN1006	-	homoserine kinase
1007	 39.77	0	1060298..1061416	+	372	13541838	-	TVN1007	-	cystathionine beta-lyase or cystathionine gamma-synthase
1008	 38.38	0	1061681..1062076	-	131	13541839	-	TVN1008	-	hypothetical protein
1009	 40.12	0	1062110..1063258	-	382	13541840	-	TVN1009	-	translation-associated GTPase
1010	 43.50	0	1063293..1064915	-	540	13541841	-	TVN1010	-	Fe-S oxidoreductase
1011	 41.61	0	1065076..1065993	-	305	13541842	-	TVN1011	-	heat shock protein HtpX
1012	 38.42	0	1066198..1067415	+	405	13541843	-	TVN1012	-	ATPase
1013	 40.64	0	1067417..1068265	+	282	13541844	-	TVN1013	-	hypothetical protein
1014	 42.28	0	1068262..1068999	+	245	13541845	-	TVN1014	-	hypothetical protein
1015	 41.61	0	1068996..1070228	+	410	13541846	-	TVN1015	-	ATPase
1016	 38.57	0	1070221..1071519	-	432	13541847	-	TVN1016	-	NhaP-type Na+/H+ antiporter
1017	 41.43	0	1071522..1072250	-	242	13541848	nadE	TVN1017	-	NAD synthetase
1018	 41.73	0	1072456..1073301	-	281	13541849	-	TVN1018	-	5,10-methylene-tetrahydrofolate dehydrogenase
1019	 41.62	0	1073292..1074377	-	361	13541850	-	TVN1019	-	glucose 1-dehydrogenase
1020	 41.94	0	1074483..1076108	+	541	13541851	-	TVN1020	-	pyruvate kinase
1021	 45.68	+1	1076124..1077605	-	493	13541852	-	TVN1021	-	NAD-dependent aldehyde dehydrogenase
1022	 38.94	0	1077942..1078655	-	237	13541853	trpC	TVN1022	-	indole-3-glycerol-phosphate synthase
1023	 42.57	0	1078652..1079203	-	183	13541854	-	TVN1023	-	anthranilate synthase component II
1024	 42.05	0	1079200..1080255	-	351	13541855	-	TVN1024	-	anthranilate synthase component I
1025	 41.67	0	1080245..1080832	-	195	13541856	-	TVN1025	-	N-(5'-phosphoribosyl)anthranilate isomerase
1026	 42.02	0	1080804..1081793	-	329	13541857	trpD	TVN1026	-	anthranilate phosphoribosyltransferase
1027	 42.02	0	1081798..1082511	-	237	13541858	-	TVN1027	-	tryptophan synthase subunit alpha
1028	 40.25	0	1082508..1083317	-	269	13541859	-	TVN1028	-	hypothetical protein
1029	 37.50	0	1083343..1083726	-	127	13541860	-	TVN1029	-	hypothetical protein
40.87	MEAN

3.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.