IslandPath Analysis: Thermoplasma volcanium GSS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.87   STD DEV: 3.44
Thermoplasma volcanium GSS1, complete genome - 1..1584804
1499 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
838	 45.05	+1	873691..874800	+	369	13541669	-	TVN0838	-	coenzyme PQQ synthesis protein E
839	 40.18	0	874790..875242	-	150	13541670	-	TVN0839	-	hypothetical protein
840	 44.82	+1	875243..876487	-	414	13541671	-	TVN0840	-	glycerol-3-phosphate dehydrogenase
841	 42.98	0	876539..877129	-	196	13541672	-	TVN0841	-	glycerophosphoryl diester phosphodiesterase
842	 44.67	+1	877087..878391	-	434	13541673	-	TVN0842	-	transposase
843	 41.98	0	878378..878782	-	134	13541674	-	TVN0843	-	hypothetical protein
844	 43.78	0	878825..879025	-	66	13541675	-	TVN0844	-	hypothetical protein
845	 44.51	+1	879099..879635	-	178	13541676	-	TVN0845	-	nicotinamide-nucleotide adenylyltransferase
846	 45.77	+1	879862..881751	+	629	13541677	-	TVN0846	-	2-oxoacid--ferredoxin oxidoreductase, alpha subunit
847	 46.54	+1	881741..882664	+	307	13541678	-	TVN0847	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
848	 44.19	0	882679..883839	-	386	13541679	-	TVN0848	-	aspartate aminotransferase
849	 42.93	0	883980..884813	+	277	13541680	-	TVN0849	-	site-specific DNA methylase
850	 45.68	+1	884896..885567	+	223	13541681	-	TVN0850	-	metal-dependent hydrolase
851	 43.17	0	885564..885929	-	121	13541682	-	TVN0851	-	nucleic acid-binding protein
852	 41.99	0	885910..886521	-	203	13541683	-	TVN0852	-	2-phosphoglycerate kinase
853	 41.88	0	886521..887105	-	194	13541684	-	TVN0853	-	nicotinamidase-like amidase
854	 43.82	0	887209..887952	+	247	13541685	-	TVN0854	-	dolichol-phosphate-mannosyltransferase
855	 41.67	0	887956..888279	-	107	13541686	-	TVN0855	-	hypothetical protein
856	 42.68	0	888403..889953	-	516	13541687	-	TVN0856	-	family X DNA polymerase
857	 41.32	0	890000..890362	-	120	13541688	-	TVN0857	-	hypothetical protein
858	 46.88	+1	890402..891058	-	218	13541689	-	TVN0858	-	metal-dependent hydrolase
859	 43.88	0	891084..891320	-	78	13541690	-	TVN0859	-	nucleic-acid-binding protein (Zn-ribbon)
860	 38.44	0	891399..891770	+	123	13541691	-	TVN0860	-	hypothetical protein
861	 38.91	0	891777..892583	-	268	13541692	-	TVN0861	-	prephenate dehydratase
862	 34.81	-1	892969..893913	-	314	13541693	-	TVN0862	-	cell wall biosynthesis glycosyltransferase
863	 37.92	0	893971..895104	-	377	13541694	-	TVN0863	-	glycosyltransferase
864	 42.12	0	895451..896554	-	367	13541695	-	TVN0864	-	glycosyltransferase
865	 41.24	0	897346..897522	+	58	13541696	-	TVN0865	-	transposase
866	 46.45	+1	897658..898023	+	121	13541697	-	TVN0866	-	hypothetical protein
867	 42.89	0	898063..898533	+	156	13541698	-	TVN0867	-	hypothetical protein
868	 40.94	0	898622..899173	-	183	13541699	-	TVN0868	-	hypothetical protein
869	 29.15	-2	899600..900412	+	270	13541700	-	TVN0869	-	cell wall biosynthesis glycosyltransferase
870	 25.57	-2	901335..901553	+	72	13541701	-	TVN0870	-	hypothetical protein
871	 26.90	-2	902108..902620	+	170	13541702	-	TVN0871	-	cell wall biosynthesis glycosyltransferase
872	 33.77	-2	903798..904250	+	150	13541703	-	TVN0872	-	glycosyltransferase
873	 32.99	-2	904721..905596	-	291	13541704	-	TVN0873	-	SAM-dependent methyltransferase
874	 31.76	-2	908448..908765	+	105	13541705	-	TVN0874	-	integrase/recombinase
875	 37.93	0	909830..910003	-	57	13541706	-	TVN0875	-	aldo/keto reductase
876	 22.16	-2	910396..911451	-	351	13541707	-	TVN0876	-	cell wall biosynthesis glycosyltransferase
877	 30.59	-2	911574..912704	-	376	13541708	-	TVN0877	-	glycosyltransferase
878	 37.12	-1	912906..913169	-	87	13541709	-	TVN0878	-	translation initiation factor IF-1
879	 31.20	-2	913498..916074	-	858	13541710	-	TVN0879	-	hypothetical protein
880	 28.91	-2	917701..918762	-	353	13541711	-	TVN0880	-	glycosyltransferase
881	 32.44	-2	919339..920010	+	223	13541712	-	TVN0881	-	SAM-dependent methyltransferase
882	 41.67	0	921433..921852	+	139	13541713	-	TVN0882	-	hypothetical protein
883	 41.99	0	922132..922512	+	126	13541714	-	TVN0883	-	hypothetical protein
884	 36.60	-1	922748..923542	-	264	13541715	-	TVN0884	-	cell wall biosynthesis glycosyltransferase
885	 36.74	-1	923753..924280	-	175	13541716	-	TVN0885	-	hypothetical protein
886	 34.50	-1	924334..925968	-	544	13541717	-	TVN0886	-	hypothetical protein
887	 37.99	0	926017..926940	+	307	13541718	-	TVN0887	-	nucleoside-diphosphate-sugar epimerase
888	 37.95	0	926937..927911	+	324	13541719	-	TVN0888	-	kinase related to galactokinase and mevalonate kinase
889	 38.99	0	928372..929892	+	506	13541720	-	TVN0889	-	O-antigen and teichoic acid export protein
890	 39.35	0	930644..932389	+	581	13541721	-	TVN0890	-	acylaminoacyl-peptidase
891	 32.55	-2	933646..934671	+	341	13541722	-	TVN0891	-	glycosyltransferase
892	 30.30	-2	935209..936231	-	340	13541723	-	TVN0892	-	cell wall biosynthesis glycosyltransferase
893	 41.91	0	937737..939251	+	504	13541724	-	TVN0893	-	gamma-glutamyltranspeptidase
894	 43.50	0	939308..940537	+	409	13541725	-	TVN0894	-	sugar transport permease
895	 41.77	0	940548..943640	-	1030	13541726	-	TVN0895	-	Tricorn protease
896	 39.30	0	943731..944468	+	245	13541727	-	TVN0896	-	SAM-dependent methyltransferase
897	 43.49	0	944469..945029	-	186	13541728	-	TVN0897	-	hypothetical protein
898	 41.00	0	945253..946674	+	473	13541729	-	TVN0898	-	amino acid transporter
899	 39.05	0	947223..948272	+	349	13541730	-	TVN0899	-	dTDP-glucose pyrophosphorylase
900	 36.77	-1	948279..949121	+	280	13541731	-	TVN0900	-	dTDP-4-dehydrorhamnose reductase
901	 38.52	0	949118..949657	+	179	13541732	-	TVN0901	-	dTDP-4-dehydrorhamnose 3,5-epimerase
902	 38.56	0	949654..950610	+	318	13541733	-	TVN0902	-	dTDP-D-glucose 4,6-dehydratase
903	 42.71	0	951870..952253	+	127	13541734	-	TVN0903	-	hypothetical protein
904	 39.06	0	952290..953267	+	325	13541735	-	TVN0904	-	cell wall biosynthesis glycosyltransferase
905	 36.96	-1	953314..954084	+	256	13541736	-	TVN0905	-	nucleoside-diphosphate-sugar epimerase
906	 38.10	0	955769..956419	+	216	13541737	-	TVN0906	-	DNA-binding protein
907	 44.30	0	956954..958321	-	455	13541738	-	TVN0907	-	major facilitator superfamily permease
908	 41.20	0	958399..959517	-	372	13541739	-	TVN0908	-	carnitine dehydratase
909	 41.26	0	959514..960548	-	344	13541740	-	TVN0909	-	isopropylmalate synthase
910	 41.92	0	960913..961809	-	298	13541741	-	TVN0910	-	proline iminopeptidase
911	 44.11	0	961784..963184	-	466	13541742	-	TVN0911	-	amino acid transporter
912	 41.20	0	963693..965471	+	592	13541743	-	TVN0912	-	acylaminoacyl-peptidase
913	 39.66	0	965581..965928	+	115	13541744	-	TVN0913	-	hypothetical protein
914	 42.50	0	965932..967317	-	461	13541745	-	TVN0914	-	metal-dependent hydrolase
915	 40.08	0	967872..968612	+	246	13541746	-	TVN0915	-	enoyl-CoA hydratase
916	 42.09	0	968891..970615	-	574	13541747	-	TVN0916	-	cobalamin biosynthesis protein (CbiG-related)/precorrin-6Y methylase
917	 43.71	0	970612..971366	-	251	13541748	-	TVN0917	-	precorrin-4 methylase
918	 38.84	0	971375..972064	-	229	13541749	-	TVN0918	-	precorrin-2 methylase
919	 41.42	0	972073..972678	-	201	13541750	-	TVN0919	-	precorrin-6Y methylase
920	 45.50	+1	972668..973801	-	377	13541751	cbiD	TVN0920	-	cobalt-precorrin-6A synthase
921	 45.11	+1	973788..974543	-	251	13541752	-	TVN0921	-	precorrin-3B methylase
922	 44.12	0	974537..975250	-	237	13541753	-	TVN0922	-	precorrin isomerase
923	 41.90	0	975318..976076	-	252	13541754	-	TVN0923	-	uroporphyrinogen-III methylase
924	 40.00	0	976073..976717	-	214	13541755	-	TVN0924	-	siroheme synthase
925	 39.34	0	976779..977111	-	110	13541756	-	TVN0925	-	hypothetical protein
926	 40.82	0	977291..977878	-	195	13541757	-	TVN0926	-	aspartokinase beta subunit
927	 40.62	0	978001..979194	+	397	13541758	-	TVN0927	-	argininosuccinate synthase
928	 38.13	0	979191..980504	+	437	13541759	-	TVN0928	-	argininosuccinate lyase
929	 42.64	0	980491..981339	-	282	13541760	-	TVN0929	-	gluconolactonase
930	 39.62	0	981501..982439	+	312	13541761	-	TVN0930	-	Zn-dependent hydrolase
931	 44.81	+1	982485..983765	+	426	13541762	-	TVN0931	-	tryptophan synthase subunit beta
932	 44.23	0	984086..985801	+	571	13541763	-	TVN0932	-	Fe-S oxidoreductase
933	 39.30	0	985839..986240	+	133	13541764	-	TVN0933	-	hypothetical protein
934	 45.18	+1	986370..986825	+	151	13541765	-	TVN0934	-	transcription regulator
935	 42.94	0	986776..987795	+	339	13541766	-	TVN0935	-	ABC-type multidrug transport system, ATPase component
936	 40.05	0	987796..988599	+	267	13541767	-	TVN0936	-	ABC transporter permease
937	 40.82	0	988703..989851	+	382	13541768	-	TVN0937	-	Fe-S oxidoreductase
40.87	MEAN

3.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.