IslandPath Analysis: Thermoplasma volcanium GSS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.87   STD DEV: 3.44
Thermoplasma volcanium GSS1, complete genome - 1..1584804
1499 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
39	 36.65	-1	43106..43618	+	170	13540870	-	TVN0039	-	hypothetical protein
40	 44.91	+1	43806..44090	+	94	13540871	-	TVN0040	-	hypothetical protein
41	 38.50	0	44114..44713	-	199	13540872	-	TVN0041	-	regulator of amino acid metabolism
42	 37.36	-1	44802..45074	-	90	13540873	-	TVN0042	-	hypothetical protein
43	 49.71	+2	45165..45689	-	174	13540874	-	TVN0043	-	hypothetical protein
44	 39.23	0	46243..46971	+	242	13540875	-	TVN0044	-	TPR repeat-containing protein
45	 41.46	0	46979..47335	-	118	13540876	-	TVN0045	-	hypothetical protein
46	 41.63	0	47464..48222	+	252	13540877	-	TVN0046	-	exonuclease III
47	 44.57	+1	48225..49505	-	426	13540878	glyA	TVN0047	-	serine hydroxymethyltransferase
48	 42.98	0	49756..49983	+	75	13540879	-	TVN0048	-	H+-ATPase subunit K
49	 35.48	-1	49989..50546	+	185	13540880	-	TVN0049	-	V-type ATP synthase subunit E
50	 40.06	0	50548..51618	+	356	13540881	-	TVN0050	-	V-type ATP synthase subunit C
51	 40.32	0	51620..51934	+	104	13540882	-	TVN0051	-	V-type ATP synthase subunit F
52	 44.36	+1	51944..54274	+	776	13540883	-	TVN0052	-	V-type ATP synthase subunit A
53	 45.84	+1	54255..55637	+	460	13540884	-	TVN0053	-	V-type ATP synthase subunit B
54	 42.90	0	55622..56269	+	215	13540885	-	TVN0054	-	V-type ATP synthase subunit D
55	 40.48	0	56417..56752	+	111	13540886	-	TVN0055	-	V-type ATP synthase subunit H
56	 41.46	0	56755..58686	+	643	13540887	-	TVN0056	-	V-type ATP synthase subunit I
57	 39.83	0	58751..59350	+	199	13540888	-	TVN0057	-	glutamine amidotransferase subunit PdxT
58	 37.28	-1	59351..60439	+	362	13540889	-	TVN0058	-	aminomethyltransferase (glycine cleavage system T protein)
59	 38.98	0	60866..61804	-	312	13540890	-	TVN0059	-	UDP-glucose 4-epimerase
60	 40.69	0	61978..62181	+	67	13540891	-	TVN0060	-	nucleic-acid-binding protein (Zn-ribbon)
61	 44.82	+1	62254..62871	+	205	13540892	-	TVN0061	-	superoxide dismutase
62	 36.42	-1	62879..63493	+	204	13540893	-	TVN0062	-	N-glycosylase/DNA lyase
63	 42.31	0	63671..64561	-	296	13540894	-	TVN0063	-	phosphate permease
64	 41.77	0	64561..65125	-	188	13540895	-	TVN0064	-	hypothetical protein
65	 43.82	0	65335..65973	+	212	13540896	-	TVN0065	-	MarC family integral membrane protein
66	 39.39	0	65980..66474	+	164	13540897	-	TVN0066	-	2'-5' RNA ligase
67	 42.75	0	66522..67031	+	169	13540898	-	TVN0067	-	hypothetical protein
68	 41.30	0	67028..67504	-	158	13540899	-	TVN0068	-	nucleic-acid-binding protein
69	 48.17	+2	67506..68678	-	390	13540900	-	TVN0069	-	acetyl-CoA acetyltransferase
70	 41.67	0	69015..70322	+	435	13540901	-	TVN0070	-	proline/betaine transport permease
71	 47.00	+1	70571..71521	+	316	13540902	-	TVN0071	-	threonine synthase
72	 45.51	+1	71521..72555	+	344	13540903	-	TVN0072	-	hypothetical protein
73	 41.68	0	72606..74006	+	466	13540904	-	TVN0073	-	metal-binding protein containing
74	 44.31	+1	74056..75057	+	333	13540905	-	TVN0074	-	D-mannonate dehydratase
75	 43.38	0	75046..75831	-	261	13540906	-	TVN0075	-	aldose dehydrogenase
76	 42.83	0	75867..76361	-	164	13540907	-	TVN0076	-	hypothetical protein
77	 43.06	0	76358..77128	-	256	13540908	-	TVN0077	-	hypothetical protein
78	 39.19	0	77159..78166	-	335	13540909	-	TVN0078	-	histidinol-phosphate aminotransferase
79	 40.32	0	78297..79184	+	295	13540910	-	TVN0079	-	hypothetical protein
80	 40.00	0	79186..79590	+	134	13540911	-	TVN0080	-	hypothetical protein
81	 42.78	0	79558..80637	-	359	13540912	-	TVN0081	-	nucleoside-diphosphate-sugar pyrophosphorylase
82	 38.16	0	80863..81816	-	317	13540913	-	TVN0082	-	hypothetical protein
83	 43.57	0	81827..83194	-	455	13540914	-	TVN0083	-	cytochrome bd-type quinol oxidase, subunit 1
84	 42.23	0	83526..84143	+	205	13540915	-	TVN0084	-	transcription activator
85	 42.30	0	84357..84869	-	170	13540916	-	TVN0085	-	hypothetical protein
86	 40.92	0	85061..85666	+	201	13540917	-	TVN0086	-	alpha/beta superfamily hydrolase
87	 40.82	0	85663..86076	+	137	13540918	-	TVN0087	-	molybdopterin converting factor, large subunit
88	 44.09	0	89391..90245	-	284	13540919	-	TVN0088	-	ATPase involved in chromosome partitioning
89	 43.89	0	90326..91936	-	536	13540920	-	TVN0089	-	formyltetrahydrofolate synthetase
90	 40.81	0	91933..92547	-	204	13540921	-	TVN0090	-	formiminotetrahydrofolate cyclodeaminase
91	 42.02	0	92631..93539	-	302	13540922	-	TVN0091	-	glutamate formiminotransferase
92	 42.40	0	93749..96052	+	767	13540923	-	TVN0092	-	ribonucleotide-diphosphate reductase subunit alpha
93	 39.53	0	96070..96843	-	257	13540924	-	TVN0093	-	metal-dependent hydrolase
94	 42.10	0	97142..98920	-	592	13540925	-	TVN0094	-	chloride channel protein
95	 38.39	0	99129..100097	-	322	13540926	-	TVN0095	-	cell wall biosynthesis glycosyltransferase
96	 36.93	-1	100132..100770	-	212	13540927	-	TVN0096	-	2-phosphosulfolactate phosphatase
97	 42.66	0	100811..101839	-	342	13540928	-	TVN0097	-	Kef-type K+ transporter NAD-binding component
98	 41.99	0	102084..102626	+	180	13540929	-	TVN0098	-	hypothetical protein
99	 45.31	+1	102621..103931	-	436	13540930	-	TVN0099	-	dihydrolipoamide dehydrogenase
100	 43.84	0	103933..105141	-	402	13540931	-	TVN0100	-	branched-chain alpha-keto acid dehydrogenase subunit E2
101	 47.92	+2	105141..106100	-	319	13540932	-	TVN0101	-	thiamine pyrophosphate-dependent dehydrogenase, E1 component beta subunit
102	 46.15	+1	106097..107110	-	337	13540933	-	TVN0102	-	branched-chain alpha-ketoacid dehydrogenase, E1 component alpha subunit
103	 44.98	+1	107310..108185	-	291	13540934	-	TVN0103	-	methionine aminopeptidase
104	 41.74	0	108190..108867	-	225	13540935	-	TVN0104	-	hypothetical protein
105	 27.59	-2	110650..110910	-	86	13540936	-	TVN0105	-	hypothetical protein
106	 28.90	-2	110910..111878	-	322	13540937	-	TVN0106	-	hypothetical protein
107	 28.69	-2	111880..112590	-	236	13540938	-	TVN0107	-	hypothetical protein
108	 27.63	-2	112611..113768	-	385	13540939	-	TVN0108	-	hypothetical protein
109	 30.98	-2	113769..114659	-	296	13540940	-	TVN0109	-	hypothetical protein
110	 34.35	-1	114661..115350	-	229	13540941	-	TVN0110	-	hypothetical protein
111	 29.48	-2	115343..115783	-	146	13540942	-	TVN0111	-	hypothetical protein
112	 29.68	-2	115828..118155	-	775	13540943	-	TVN0112	-	HD superfamily hydrolase
113	 25.77	-2	118145..118858	-	237	13540944	-	TVN0113	-	hypothetical protein
114	 23.75	-2	119105..120325	+	406	13540945	-	TVN0114	-	hypothetical protein
115	 43.91	0	123780..124526	+	248	13540946	-	TVN0115	-	hypothetical protein
116	 41.55	0	124519..124725	+	68	13540947	-	TVN0116	-	hypothetical protein
117	 42.16	0	124714..126027	-	437	13540948	-	TVN0117	-	tRNA CCA-pyrophosphorylase
118	 43.33	0	126024..126383	-	119	13540949	nac	TVN0118	-	nascent polypeptide-associated complex protein
119	 47.75	+2	127036..127458	-	140	13540950	-	TVN0119	-	ferredoxin
120	 40.85	0	127681..128172	+	163	13540951	-	TVN0120	-	hypothetical protein
121	 38.46	0	128375..128764	-	129	13540952	-	TVN0121	-	hypothetical protein
122	 42.19	0	128958..130538	+	526	13540953	-	TVN0122	-	Acyl-coenzyme A synthetase
123	 43.79	0	130805..132220	+	471	13540954	-	TVN0123	-	phosphate ABC transporter permease
124	 38.46	0	132662..133675	+	337	13540955	-	TVN0124	-	adenine specific DNA methylase
125	 42.02	0	133681..134727	+	348	13540956	-	TVN0125	-	adenine specific DNA methylase
126	 40.29	0	135483..136991	-	502	13540957	-	TVN0126	-	Acyl-CoA synthetase (AMP-forming)
127	 43.60	0	137051..138433	-	460	13540958	-	TVN0127	-	sugar kinase
128	 45.69	+1	138528..139547	+	339	13540959	-	TVN0128	-	oxidoreductase
129	 36.30	-1	139649..139918	+	89	13540960	-	TVN0129	-	hypothetical protein
130	 45.08	+1	139971..141026	+	351	13540961	-	TVN0130	-	hypothetical protein
131	 45.21	+1	141013..142182	+	389	13540962	-	TVN0131	-	acetyl-CoA acetyltransferase
132	 47.26	+1	142185..142586	+	133	13540963	-	TVN0132	-	nucleic-acid-binding protein
133	 40.91	0	142583..143242	-	219	13540964	rnhB	TVN0133	-	ribonuclease HII
134	 39.17	0	143455..143985	+	176	13540965	-	TVN0134	-	hypothetical protein
135	 38.62	0	143986..144477	+	163	13540966	-	TVN0135	-	hypothetical protein
136	 43.11	0	144724..144948	+	74	13540967	-	TVN0136	-	integrase/recombinase
137	 45.72	+1	145021..145569	+	182	13540968	-	TVN0137	-	integrase/recombinase
138	 47.73	+1	145846..147033	-	395	13540969	-	TVN0138	-	multidrug efflux permease
40.87	MEAN

3.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.