IslandPath Analysis: Thermoplasma volcanium GSS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.87   STD DEV: 3.44
Thermoplasma volcanium GSS1, complete genome - 1..1584804
1499 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
804	 43.83	0	823875..824522	+	215	13541635	-	TVN0804	-	endonuclease III
805	 42.36	0	824539..826311	-	590	13541636	-	TVN0805	-	amino acid transporter
806	 42.28	0	826402..827631	+	409	13541637	-	TVN0806	-	diaminopimelate decarboxylase
807	 40.16	0	827724..831149	+	1141	13541638	-	TVN0807	-	chromosome segregation ATPase
808	 39.31	0	831139..831891	+	250	13541639	-	TVN0808	-	hypothetical protein
809	 39.39	0	831893..832486	-	197	13541640	-	TVN0809	-	hypothetical protein
810	 41.16	0	832637..833926	+	429	13541641	-	TVN0810	-	major facilitator superfamily permease
811	 45.26	+1	834091..835692	-	533	13541642	-	TVN0811	-	N-methylhydaintoinase B
812	 41.81	0	835694..837664	-	656	13541643	-	TVN0812	-	N-methylhydaintoinase A
813	 37.46	0	838588..839460	-	290	13541644	-	TVN0813	-	phospholipase D
814	 41.14	0	841665..843689	+	674	13541645	-	TVN0814	-	ski2-like helicase
815	 38.64	0	843667..844590	+	307	13541646	-	TVN0815	-	methyltransferase
816	 44.27	0	844763..846070	+	435	13541647	-	TVN0816	-	NAD(FAD)-dependent dehydrogenase
817	 44.13	0	846072..848756	+	894	13541648	-	TVN0817	-	Lhr-like helicase
818	 41.12	0	848765..850447	-	560	13541649	-	TVN0818	-	membrane-associated Zn-dependent protease 1
819	 42.24	0	850702..853338	-	878	13541650	alaS	TVN0819	-	alanyl-tRNA synthetase
820	 40.19	0	853481..853903	-	140	13541651	-	TVN0820	-	GAF domain-containing protein
821	 40.27	0	853975..854868	-	297	13541652	-	TVN0821	-	small-conductance mechanosensitive channel protein
822	 42.30	0	855624..856916	-	430	13541653	-	TVN0822	-	major facilitator superfamily permease
823	 42.72	0	857055..859451	+	798	13541654	-	TVN0823	-	DNA polymerase II
824	 40.84	0	859714..860619	-	301	13541655	-	TVN0824	-	ornithine cyclodeaminase
825	 41.96	0	860769..861800	+	343	13541656	-	TVN0825	-	glucosamine 6-phosphate synthase
826	 42.60	0	861874..862758	+	294	13541657	-	TVN0826	-	3-hydroxyacyl-CoA dehydrogenase
827	 45.03	+1	862775..863458	+	227	13541658	-	TVN0827	-	Uracil-DNA glycosylase
828	 44.10	0	863466..864737	-	423	13541659	-	TVN0828	-	Mn2+ transporter
829	 42.34	0	864852..867938	+	1028	13541660	ileS	TVN0829	-	isoleucyl-tRNA synthetase
830	 40.58	0	867995..868615	+	206	13541661	-	TVN0830	-	rhodanese-related protein
831	 41.53	0	868766..869119	+	117	13541662	-	TVN0831	-	hypothetical protein
832	 40.39	0	869124..869690	+	188	13541663	-	TVN0832	-	phosphoglycerate mutase
833	 46.81	+1	869966..870514	+	182	13541664	-	TVN0833	-	2-oxoacid-ferredoxin oxidoreductase, gamma subunit
834	 43.86	0	870523..870807	+	94	13541665	-	TVN0834	-	2-oxoisovalerate-ferredoxin oxidoreductase, subunit delta (vorD)
835	 45.46	+1	870804..871982	+	392	13541666	-	TVN0835	-	pyruvate:ferredoxin oxidoreductase, alpha subunit
836	 48.87	+2	871982..872869	+	295	13541667	-	TVN0836	-	2-ketoisovalerate ferredoxin oxidoreductase subunit beta
837	 43.37	0	872883..873440	-	185	13541668	-	TVN0837	-	SAM-dependent methyltransferase
838	 45.05	+1	873691..874800	+	369	13541669	-	TVN0838	-	coenzyme PQQ synthesis protein E
839	 40.18	0	874790..875242	-	150	13541670	-	TVN0839	-	hypothetical protein
840	 44.82	+1	875243..876487	-	414	13541671	-	TVN0840	-	glycerol-3-phosphate dehydrogenase
841	 42.98	0	876539..877129	-	196	13541672	-	TVN0841	-	glycerophosphoryl diester phosphodiesterase
842	 44.67	+1	877087..878391	-	434	13541673	-	TVN0842	-	transposase
843	 41.98	0	878378..878782	-	134	13541674	-	TVN0843	-	hypothetical protein
844	 43.78	0	878825..879025	-	66	13541675	-	TVN0844	-	hypothetical protein
845	 44.51	+1	879099..879635	-	178	13541676	-	TVN0845	-	nicotinamide-nucleotide adenylyltransferase
846	 45.77	+1	879862..881751	+	629	13541677	-	TVN0846	-	2-oxoacid--ferredoxin oxidoreductase, alpha subunit
847	 46.54	+1	881741..882664	+	307	13541678	-	TVN0847	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
848	 44.19	0	882679..883839	-	386	13541679	-	TVN0848	-	aspartate aminotransferase
849	 42.93	0	883980..884813	+	277	13541680	-	TVN0849	-	site-specific DNA methylase
850	 45.68	+1	884896..885567	+	223	13541681	-	TVN0850	-	metal-dependent hydrolase
851	 43.17	0	885564..885929	-	121	13541682	-	TVN0851	-	nucleic acid-binding protein
852	 41.99	0	885910..886521	-	203	13541683	-	TVN0852	-	2-phosphoglycerate kinase
853	 41.88	0	886521..887105	-	194	13541684	-	TVN0853	-	nicotinamidase-like amidase
854	 43.82	0	887209..887952	+	247	13541685	-	TVN0854	-	dolichol-phosphate-mannosyltransferase
855	 41.67	0	887956..888279	-	107	13541686	-	TVN0855	-	hypothetical protein
856	 42.68	0	888403..889953	-	516	13541687	-	TVN0856	-	family X DNA polymerase
857	 41.32	0	890000..890362	-	120	13541688	-	TVN0857	-	hypothetical protein
858	 46.88	+1	890402..891058	-	218	13541689	-	TVN0858	-	metal-dependent hydrolase
859	 43.88	0	891084..891320	-	78	13541690	-	TVN0859	-	nucleic-acid-binding protein (Zn-ribbon)
860	 38.44	0	891399..891770	+	123	13541691	-	TVN0860	-	hypothetical protein
861	 38.91	0	891777..892583	-	268	13541692	-	TVN0861	-	prephenate dehydratase
862	 34.81	-1	892969..893913	-	314	13541693	-	TVN0862	-	cell wall biosynthesis glycosyltransferase
863	 37.92	0	893971..895104	-	377	13541694	-	TVN0863	-	glycosyltransferase
864	 42.12	0	895451..896554	-	367	13541695	-	TVN0864	-	glycosyltransferase
865	 41.24	0	897346..897522	+	58	13541696	-	TVN0865	-	transposase
866	 46.45	+1	897658..898023	+	121	13541697	-	TVN0866	-	hypothetical protein
867	 42.89	0	898063..898533	+	156	13541698	-	TVN0867	-	hypothetical protein
868	 40.94	0	898622..899173	-	183	13541699	-	TVN0868	-	hypothetical protein
869	 29.15	-2	899600..900412	+	270	13541700	-	TVN0869	-	cell wall biosynthesis glycosyltransferase
870	 25.57	-2	901335..901553	+	72	13541701	-	TVN0870	-	hypothetical protein
871	 26.90	-2	902108..902620	+	170	13541702	-	TVN0871	-	cell wall biosynthesis glycosyltransferase
872	 33.77	-2	903798..904250	+	150	13541703	-	TVN0872	-	glycosyltransferase
873	 32.99	-2	904721..905596	-	291	13541704	-	TVN0873	-	SAM-dependent methyltransferase
874	 31.76	-2	908448..908765	+	105	13541705	-	TVN0874	-	integrase/recombinase
875	 37.93	0	909830..910003	-	57	13541706	-	TVN0875	-	aldo/keto reductase
876	 22.16	-2	910396..911451	-	351	13541707	-	TVN0876	-	cell wall biosynthesis glycosyltransferase
877	 30.59	-2	911574..912704	-	376	13541708	-	TVN0877	-	glycosyltransferase
878	 37.12	-1	912906..913169	-	87	13541709	-	TVN0878	-	translation initiation factor IF-1
879	 31.20	-2	913498..916074	-	858	13541710	-	TVN0879	-	hypothetical protein
880	 28.91	-2	917701..918762	-	353	13541711	-	TVN0880	-	glycosyltransferase
881	 32.44	-2	919339..920010	+	223	13541712	-	TVN0881	-	SAM-dependent methyltransferase
882	 41.67	0	921433..921852	+	139	13541713	-	TVN0882	-	hypothetical protein
883	 41.99	0	922132..922512	+	126	13541714	-	TVN0883	-	hypothetical protein
884	 36.60	-1	922748..923542	-	264	13541715	-	TVN0884	-	cell wall biosynthesis glycosyltransferase
885	 36.74	-1	923753..924280	-	175	13541716	-	TVN0885	-	hypothetical protein
886	 34.50	-1	924334..925968	-	544	13541717	-	TVN0886	-	hypothetical protein
887	 37.99	0	926017..926940	+	307	13541718	-	TVN0887	-	nucleoside-diphosphate-sugar epimerase
888	 37.95	0	926937..927911	+	324	13541719	-	TVN0888	-	kinase related to galactokinase and mevalonate kinase
889	 38.99	0	928372..929892	+	506	13541720	-	TVN0889	-	O-antigen and teichoic acid export protein
890	 39.35	0	930644..932389	+	581	13541721	-	TVN0890	-	acylaminoacyl-peptidase
891	 32.55	-2	933646..934671	+	341	13541722	-	TVN0891	-	glycosyltransferase
892	 30.30	-2	935209..936231	-	340	13541723	-	TVN0892	-	cell wall biosynthesis glycosyltransferase
893	 41.91	0	937737..939251	+	504	13541724	-	TVN0893	-	gamma-glutamyltranspeptidase
894	 43.50	0	939308..940537	+	409	13541725	-	TVN0894	-	sugar transport permease
895	 41.77	0	940548..943640	-	1030	13541726	-	TVN0895	-	Tricorn protease
896	 39.30	0	943731..944468	+	245	13541727	-	TVN0896	-	SAM-dependent methyltransferase
897	 43.49	0	944469..945029	-	186	13541728	-	TVN0897	-	hypothetical protein
898	 41.00	0	945253..946674	+	473	13541729	-	TVN0898	-	amino acid transporter
899	 39.05	0	947223..948272	+	349	13541730	-	TVN0899	-	dTDP-glucose pyrophosphorylase
900	 36.77	-1	948279..949121	+	280	13541731	-	TVN0900	-	dTDP-4-dehydrorhamnose reductase
901	 38.52	0	949118..949657	+	179	13541732	-	TVN0901	-	dTDP-4-dehydrorhamnose 3,5-epimerase
902	 38.56	0	949654..950610	+	318	13541733	-	TVN0902	-	dTDP-D-glucose 4,6-dehydratase
903	 42.71	0	951870..952253	+	127	13541734	-	TVN0903	-	hypothetical protein
40.87	MEAN

3.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.