IslandPath Analysis: Thermoplasma volcanium GSS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.87   STD DEV: 3.44
Thermoplasma volcanium GSS1, complete genome - 1..1584804
1499 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
767	 37.75	0	782917..783822	-	301	13541598	-	TVN0767	-	acetyltransferase
768	 41.50	0	783936..785282	+	448	13541599	-	TVN0768	-	malate oxidoreductase (malic enzyme)
769	 37.15	-1	785263..785733	+	156	13541600	-	TVN0769	-	acetyltransferase
770	 44.00	0	786138..786887	-	249	13541601	-	TVN0770	-	hypothetical protein
771	 39.02	0	787296..787823	+	175	13541602	-	TVN0771	-	nicotinamidase-like amidase
772	 42.29	0	787900..789597	+	565	13541603	-	TVN0772	-	methylmalonyl-CoA mutase, alpha subunit
773	 47.20	+1	789560..790006	+	148	13541604	-	TVN0773	-	methylmalonyl-CoA mutase, cobalamin-binding subunit
774	 39.77	0	790007..790954	+	315	13541605	-	TVN0774	-	GTPase
775	 37.07	-1	790978..791352	+	124	13541606	-	TVN0775	-	molecular chaperone (small heat shock protein, hsp20-related)
776	 39.33	0	791355..792887	-	510	13541607	-	TVN0776	-	protein kinase
777	 36.94	-1	792902..793234	-	110	13541608	-	TVN0777	-	thioredoxin
778	 36.42	-1	793261..793584	-	107	13541609	-	TVN0778	-	hypothetical protein
779	 39.51	0	793726..794454	+	242	13541610	-	TVN0779	-	TPR repeat-containing protein
780	 40.83	0	794445..794924	-	159	13541611	-	TVN0780	-	hypothetical protein
781	 42.03	0	794990..795955	+	321	13541612	-	TVN0781	-	bifunctional methylated DNA-protein cysteine methyltransferase/deoxyinosine 3'endonuclease
782	 41.48	0	795952..797031	-	359	13541613	-	TVN0782	-	mevalonate pyrophosphate decarboxylase
783	 40.06	0	797109..798371	-	420	13541614	-	TVN0783	-	glycerate kinase
784	 43.51	0	798467..799969	+	500	13541615	-	TVN0784	-	benzoylformate decarboxylase
785	 42.91	0	799969..800469	+	166	13541616	-	TVN0785	-	Rossmann fold nucleotide-binding protein
786	 38.38	0	800502..800897	+	131	13541617	-	TVN0786	-	hypothetical protein
787	 38.88	0	800944..802692	-	582	13541618	-	TVN0787	-	amino acid transporter
788	 38.51	0	802745..803188	-	147	13541619	-	TVN0788	-	hypothetical protein
789	 37.75	0	803300..804319	+	339	13541620	-	TVN0789	-	hypothetical protein
790	 40.32	0	804316..805746	+	476	13541621	-	TVN0790	-	thiamine biosynthesis protein ThiI
791	 40.77	0	805714..806385	-	223	13541622	-	TVN0791	-	hypothetical protein
792	 44.32	+1	806423..807460	-	345	13541623	-	TVN0792	-	cell division protein FtsZ
793	 40.21	0	807623..808276	+	217	13541624	-	TVN0793	-	hypothetical protein
794	 37.32	-1	808305..808580	+	91	13541625	-	TVN0794	-	molybdopterin converting factor, small subunit
795	 44.43	+1	808604..810415	-	603	13541626	-	TVN0795	-	aldehyde:ferredoxin oxidoreductase
796	 40.21	0	810543..811706	+	387	13541627	-	TVN0796	-	glycine hydroxymethyltransferase
797	 40.06	0	811696..812781	+	361	13541628	-	TVN0797	-	CBS domain-containing protein
798	 42.03	0	812849..814159	+	436	13541629	-	TVN0798	-	Zn-dependent protease
799	 40.35	0	814156..815451	+	431	13541630	-	TVN0799	-	Zn-dependent protease
800	 41.71	0	815552..817891	+	779	13541631	-	TVN0800	-	aminopeptidase N
801	 41.22	0	817924..819318	+	464	13541632	-	TVN0801	-	multidrug efflux permease
802	 41.81	0	819699..820736	+	345	13541633	-	TVN0802	-	carbamoyl phosphate synthase small subunit
803	 42.46	0	820729..823863	+	1044	13541634	carB	TVN0803	-	carbamoyl phosphate synthase large subunit
804	 43.83	0	823875..824522	+	215	13541635	-	TVN0804	-	endonuclease III
805	 42.36	0	824539..826311	-	590	13541636	-	TVN0805	-	amino acid transporter
806	 42.28	0	826402..827631	+	409	13541637	-	TVN0806	-	diaminopimelate decarboxylase
807	 40.16	0	827724..831149	+	1141	13541638	-	TVN0807	-	chromosome segregation ATPase
808	 39.31	0	831139..831891	+	250	13541639	-	TVN0808	-	hypothetical protein
809	 39.39	0	831893..832486	-	197	13541640	-	TVN0809	-	hypothetical protein
810	 41.16	0	832637..833926	+	429	13541641	-	TVN0810	-	major facilitator superfamily permease
811	 45.26	+1	834091..835692	-	533	13541642	-	TVN0811	-	N-methylhydaintoinase B
812	 41.81	0	835694..837664	-	656	13541643	-	TVN0812	-	N-methylhydaintoinase A
813	 37.46	0	838588..839460	-	290	13541644	-	TVN0813	-	phospholipase D
814	 41.14	0	841665..843689	+	674	13541645	-	TVN0814	-	ski2-like helicase
815	 38.64	0	843667..844590	+	307	13541646	-	TVN0815	-	methyltransferase
816	 44.27	0	844763..846070	+	435	13541647	-	TVN0816	-	NAD(FAD)-dependent dehydrogenase
817	 44.13	0	846072..848756	+	894	13541648	-	TVN0817	-	Lhr-like helicase
818	 41.12	0	848765..850447	-	560	13541649	-	TVN0818	-	membrane-associated Zn-dependent protease 1
819	 42.24	0	850702..853338	-	878	13541650	alaS	TVN0819	-	alanyl-tRNA synthetase
820	 40.19	0	853481..853903	-	140	13541651	-	TVN0820	-	GAF domain-containing protein
821	 40.27	0	853975..854868	-	297	13541652	-	TVN0821	-	small-conductance mechanosensitive channel protein
822	 42.30	0	855624..856916	-	430	13541653	-	TVN0822	-	major facilitator superfamily permease
823	 42.72	0	857055..859451	+	798	13541654	-	TVN0823	-	DNA polymerase II
824	 40.84	0	859714..860619	-	301	13541655	-	TVN0824	-	ornithine cyclodeaminase
825	 41.96	0	860769..861800	+	343	13541656	-	TVN0825	-	glucosamine 6-phosphate synthase
826	 42.60	0	861874..862758	+	294	13541657	-	TVN0826	-	3-hydroxyacyl-CoA dehydrogenase
827	 45.03	+1	862775..863458	+	227	13541658	-	TVN0827	-	Uracil-DNA glycosylase
828	 44.10	0	863466..864737	-	423	13541659	-	TVN0828	-	Mn2+ transporter
829	 42.34	0	864852..867938	+	1028	13541660	ileS	TVN0829	-	isoleucyl-tRNA synthetase
830	 40.58	0	867995..868615	+	206	13541661	-	TVN0830	-	rhodanese-related protein
831	 41.53	0	868766..869119	+	117	13541662	-	TVN0831	-	hypothetical protein
832	 40.39	0	869124..869690	+	188	13541663	-	TVN0832	-	phosphoglycerate mutase
833	 46.81	+1	869966..870514	+	182	13541664	-	TVN0833	-	2-oxoacid-ferredoxin oxidoreductase, gamma subunit
834	 43.86	0	870523..870807	+	94	13541665	-	TVN0834	-	2-oxoisovalerate-ferredoxin oxidoreductase, subunit delta (vorD)
835	 45.46	+1	870804..871982	+	392	13541666	-	TVN0835	-	pyruvate:ferredoxin oxidoreductase, alpha subunit
836	 48.87	+2	871982..872869	+	295	13541667	-	TVN0836	-	2-ketoisovalerate ferredoxin oxidoreductase subunit beta
837	 43.37	0	872883..873440	-	185	13541668	-	TVN0837	-	SAM-dependent methyltransferase
838	 45.05	+1	873691..874800	+	369	13541669	-	TVN0838	-	coenzyme PQQ synthesis protein E
839	 40.18	0	874790..875242	-	150	13541670	-	TVN0839	-	hypothetical protein
840	 44.82	+1	875243..876487	-	414	13541671	-	TVN0840	-	glycerol-3-phosphate dehydrogenase
841	 42.98	0	876539..877129	-	196	13541672	-	TVN0841	-	glycerophosphoryl diester phosphodiesterase
842	 44.67	+1	877087..878391	-	434	13541673	-	TVN0842	-	transposase
843	 41.98	0	878378..878782	-	134	13541674	-	TVN0843	-	hypothetical protein
844	 43.78	0	878825..879025	-	66	13541675	-	TVN0844	-	hypothetical protein
845	 44.51	+1	879099..879635	-	178	13541676	-	TVN0845	-	nicotinamide-nucleotide adenylyltransferase
846	 45.77	+1	879862..881751	+	629	13541677	-	TVN0846	-	2-oxoacid--ferredoxin oxidoreductase, alpha subunit
847	 46.54	+1	881741..882664	+	307	13541678	-	TVN0847	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
848	 44.19	0	882679..883839	-	386	13541679	-	TVN0848	-	aspartate aminotransferase
849	 42.93	0	883980..884813	+	277	13541680	-	TVN0849	-	site-specific DNA methylase
850	 45.68	+1	884896..885567	+	223	13541681	-	TVN0850	-	metal-dependent hydrolase
851	 43.17	0	885564..885929	-	121	13541682	-	TVN0851	-	nucleic acid-binding protein
852	 41.99	0	885910..886521	-	203	13541683	-	TVN0852	-	2-phosphoglycerate kinase
853	 41.88	0	886521..887105	-	194	13541684	-	TVN0853	-	nicotinamidase-like amidase
854	 43.82	0	887209..887952	+	247	13541685	-	TVN0854	-	dolichol-phosphate-mannosyltransferase
855	 41.67	0	887956..888279	-	107	13541686	-	TVN0855	-	hypothetical protein
856	 42.68	0	888403..889953	-	516	13541687	-	TVN0856	-	family X DNA polymerase
857	 41.32	0	890000..890362	-	120	13541688	-	TVN0857	-	hypothetical protein
858	 46.88	+1	890402..891058	-	218	13541689	-	TVN0858	-	metal-dependent hydrolase
859	 43.88	0	891084..891320	-	78	13541690	-	TVN0859	-	nucleic-acid-binding protein (Zn-ribbon)
860	 38.44	0	891399..891770	+	123	13541691	-	TVN0860	-	hypothetical protein
861	 38.91	0	891777..892583	-	268	13541692	-	TVN0861	-	prephenate dehydratase
862	 34.81	-1	892969..893913	-	314	13541693	-	TVN0862	-	cell wall biosynthesis glycosyltransferase
863	 37.92	0	893971..895104	-	377	13541694	-	TVN0863	-	glycosyltransferase
864	 42.12	0	895451..896554	-	367	13541695	-	TVN0864	-	glycosyltransferase
865	 41.24	0	897346..897522	+	58	13541696	-	TVN0865	-	transposase
866	 46.45	+1	897658..898023	+	121	13541697	-	TVN0866	-	hypothetical protein
40.87	MEAN

3.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.