IslandPathversion 1.0

IslandPath Analysis: Thermoplasma volcanium GSS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.87 STD DEV: 3.44
Thermoplasma volcanium GSS1, complete genome - 1..1584804
1499 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
727	 43.46	0	741296..742213	+	305	13541558	-	TVN0727	-	esterase
728	 41.98	0	742429..743376	-	315	13541559	-	TVN0728	-	transcription regulator
729	 42.56	0	743399..744493	-	364	13541560	-	TVN0729	-	chorismate synthase
730	 41.40	0	744794..745363	-	189	13541561	-	TVN0730	-	phosphoglycerate mutase
731	 39.97	0	745716..747659	+	647	13541562	-	TVN0731	-	thioredoxin domain-containing protein
732	 43.57	0	747748..749124	+	458	13541563	-	TVN0732	-	cytochrome bd-type quinol oxidase, subunit 1
733	 40.99	0	749130..750122	+	330	13541564	-	TVN0733	-	hypothetical protein
734	 40.97	0	750626..751384	-	252	13541565	-	TVN0734	-	geranylgeranylglyceryl phosphate synthase-like protein
735	 38.52	0	751384..752193	-	269	13541566	-	TVN0735	-	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase
736	 41.89	0	752240..753268	-	342	13541567	-	TVN0736	-	N(2),N(2)-dimethylguanosine tRNA methyltransferase
737	 40.11	0	753265..753810	-	181	13541568	-	TVN0737	-	putative NTPase
738	 41.32	0	753807..754169	-	120	13541569	-	TVN0738	-	hypothetical protein
739	 35.93	-1	754205..756862	-	885	13541570	-	TVN0739	-	DNA helicase II
740	 45.84	+1	757029..758219	+	396	13541571	-	TVN0740	-	metal-dependent carboxypeptidase
741	 41.13	0	758278..758931	-	217	13541572	-	TVN0741	-	hypothetical protein
742	 40.59	0	759000..759302	-	100	13541573	-	TVN0742	-	DNA-directed RNA polymerase subunit M
743	 40.99	0	759485..759889	+	134	13541574	-	TVN0743	-	CoA-binding protein
744	 38.71	0	760262..760633	-	123	13541575	-	TVN0744	-	succinate dehydrogenase, hydrophobic anchor subunit
745	 41.13	0	760633..761055	-	140	13541576	-	TVN0745	-	succinate dehydrogenase, subunit C
746	 43.29	0	761062..761784	-	240	13541577	sdhB	TVN0746	-	succinate dehydrogenase iron-sulfur subunit
747	 43.84	0	761794..763497	-	567	13541578	sdhA	TVN0747	-	succinate dehydrogenase flavoprotein subunit
748	 40.33	0	763616..764458	+	280	13541579	-	TVN0748	-	DMT family permease
749	 37.97	0	764460..764912	-	150	161760541	moaC	TVN0749	-	putative molybdenum cofactor biosynthesis protein C
750	 35.90	-1	765016..765249	-	77	13541581	-	TVN0750	-	hypothetical protein
751	 40.29	0	765628..766116	+	162	13541582	-	TVN0751	-	molybdopterin biosynthesis protein
752	 40.37	0	766521..767543	-	340	13541583	-	TVN0752	-	threonine synthase
753	 38.63	0	767609..768061	-	150	13541584	-	TVN0753	-	hypothetical protein
754	 36.15	-1	768171..769271	+	366	13541585	-	TVN0754	-	hypothetical protein
755	 39.44	0	769333..769512	+	59	13541586	-	TVN0755	-	metal-binding protein
756	 37.97	0	769525..770235	-	236	13541587	-	TVN0756	-	metal-dependent hydrolase
757	 38.69	0	770326..771612	+	428	13541588	-	TVN0757	-	folylpolyglutamate synthase
758	 40.33	0	771819..773033	+	404	13541589	cdc6	TVN0758	-	cell division control protein 6
759	 45.03	+1	773051..774358	-	435	13541590	-	TVN0759	-	glutamate dehydrogenase
760	 44.68	+1	774569..775819	-	416	13541591	-	TVN0760	-	glutamate dehydrogenase
761	 39.04	0	775903..778635	-	910	13541592	leuS	TVN0761	-	leucyl-tRNA synthetase
762	 41.71	0	778593..779141	-	182	13541593	-	TVN0762	-	pyruvoyl-dependent arginine decarboxylase
763	 43.30	0	779361..780822	+	486	13541594	-	TVN0763	-	amino acid transporter
764	 41.97	0	780828..782078	-	416	13541595	-	TVN0764	-	transposase
765	 38.50	0	782068..782480	-	137	13541596	-	TVN0765	-	site-specific integrase-resolvase
766	 38.73	0	782700..782903	+	67	13541597	-	TVN0766	-	hypothetical protein
767	 37.75	0	782917..783822	-	301	13541598	-	TVN0767	-	acetyltransferase
768	 41.50	0	783936..785282	+	448	13541599	-	TVN0768	-	malate oxidoreductase (malic enzyme)
769	 37.15	-1	785263..785733	+	156	13541600	-	TVN0769	-	acetyltransferase
770	 44.00	0	786138..786887	-	249	13541601	-	TVN0770	-	hypothetical protein
771	 39.02	0	787296..787823	+	175	13541602	-	TVN0771	-	nicotinamidase-like amidase
772	 42.29	0	787900..789597	+	565	13541603	-	TVN0772	-	methylmalonyl-CoA mutase, alpha subunit
773	 47.20	+1	789560..790006	+	148	13541604	-	TVN0773	-	methylmalonyl-CoA mutase, cobalamin-binding subunit
774	 39.77	0	790007..790954	+	315	13541605	-	TVN0774	-	GTPase
775	 37.07	-1	790978..791352	+	124	13541606	-	TVN0775	-	molecular chaperone (small heat shock protein, hsp20-related)
776	 39.33	0	791355..792887	-	510	13541607	-	TVN0776	-	protein kinase
777	 36.94	-1	792902..793234	-	110	13541608	-	TVN0777	-	thioredoxin
778	 36.42	-1	793261..793584	-	107	13541609	-	TVN0778	-	hypothetical protein
779	 39.51	0	793726..794454	+	242	13541610	-	TVN0779	-	TPR repeat-containing protein
780	 40.83	0	794445..794924	-	159	13541611	-	TVN0780	-	hypothetical protein
781	 42.03	0	794990..795955	+	321	13541612	-	TVN0781	-	bifunctional methylated DNA-protein cysteine methyltransferase/deoxyinosine 3'endonuclease
782	 41.48	0	795952..797031	-	359	13541613	-	TVN0782	-	mevalonate pyrophosphate decarboxylase
783	 40.06	0	797109..798371	-	420	13541614	-	TVN0783	-	glycerate kinase
784	 43.51	0	798467..799969	+	500	13541615	-	TVN0784	-	benzoylformate decarboxylase
785	 42.91	0	799969..800469	+	166	13541616	-	TVN0785	-	Rossmann fold nucleotide-binding protein
786	 38.38	0	800502..800897	+	131	13541617	-	TVN0786	-	hypothetical protein
787	 38.88	0	800944..802692	-	582	13541618	-	TVN0787	-	amino acid transporter
788	 38.51	0	802745..803188	-	147	13541619	-	TVN0788	-	hypothetical protein
789	 37.75	0	803300..804319	+	339	13541620	-	TVN0789	-	hypothetical protein
790	 40.32	0	804316..805746	+	476	13541621	-	TVN0790	-	thiamine biosynthesis protein ThiI
791	 40.77	0	805714..806385	-	223	13541622	-	TVN0791	-	hypothetical protein
792	 44.32	+1	806423..807460	-	345	13541623	-	TVN0792	-	cell division protein FtsZ
793	 40.21	0	807623..808276	+	217	13541624	-	TVN0793	-	hypothetical protein
794	 37.32	-1	808305..808580	+	91	13541625	-	TVN0794	-	molybdopterin converting factor, small subunit
795	 44.43	+1	808604..810415	-	603	13541626	-	TVN0795	-	aldehyde:ferredoxin oxidoreductase
796	 40.21	0	810543..811706	+	387	13541627	-	TVN0796	-	glycine hydroxymethyltransferase
797	 40.06	0	811696..812781	+	361	13541628	-	TVN0797	-	CBS domain-containing protein
798	 42.03	0	812849..814159	+	436	13541629	-	TVN0798	-	Zn-dependent protease
799	 40.35	0	814156..815451	+	431	13541630	-	TVN0799	-	Zn-dependent protease
800	 41.71	0	815552..817891	+	779	13541631	-	TVN0800	-	aminopeptidase N
801	 41.22	0	817924..819318	+	464	13541632	-	TVN0801	-	multidrug efflux permease
802	 41.81	0	819699..820736	+	345	13541633	-	TVN0802	-	carbamoyl phosphate synthase small subunit
803	 42.46	0	820729..823863	+	1044	13541634	carB	TVN0803	-	carbamoyl phosphate synthase large subunit
804	 43.83	0	823875..824522	+	215	13541635	-	TVN0804	-	endonuclease III
805	 42.36	0	824539..826311	-	590	13541636	-	TVN0805	-	amino acid transporter
806	 42.28	0	826402..827631	+	409	13541637	-	TVN0806	-	diaminopimelate decarboxylase
807	 40.16	0	827724..831149	+	1141	13541638	-	TVN0807	-	chromosome segregation ATPase
808	 39.31	0	831139..831891	+	250	13541639	-	TVN0808	-	hypothetical protein
809	 39.39	0	831893..832486	-	197	13541640	-	TVN0809	-	hypothetical protein
810	 41.16	0	832637..833926	+	429	13541641	-	TVN0810	-	major facilitator superfamily permease
811	 45.26	+1	834091..835692	-	533	13541642	-	TVN0811	-	N-methylhydaintoinase B
812	 41.81	0	835694..837664	-	656	13541643	-	TVN0812	-	N-methylhydaintoinase A
813	 37.46	0	838588..839460	-	290	13541644	-	TVN0813	-	phospholipase D
814	 41.14	0	841665..843689	+	674	13541645	-	TVN0814	-	ski2-like helicase
815	 38.64	0	843667..844590	+	307	13541646	-	TVN0815	-	methyltransferase
816	 44.27	0	844763..846070	+	435	13541647	-	TVN0816	-	NAD(FAD)-dependent dehydrogenase
817	 44.13	0	846072..848756	+	894	13541648	-	TVN0817	-	Lhr-like helicase
818	 41.12	0	848765..850447	-	560	13541649	-	TVN0818	-	membrane-associated Zn-dependent protease 1
819	 42.24	0	850702..853338	-	878	13541650	alaS	TVN0819	-	alanyl-tRNA synthetase
820	 40.19	0	853481..853903	-	140	13541651	-	TVN0820	-	GAF domain-containing protein
821	 40.27	0	853975..854868	-	297	13541652	-	TVN0821	-	small-conductance mechanosensitive channel protein
822	 42.30	0	855624..856916	-	430	13541653	-	TVN0822	-	major facilitator superfamily permease
823	 42.72	0	857055..859451	+	798	13541654	-	TVN0823	-	DNA polymerase II
824	 40.84	0	859714..860619	-	301	13541655	-	TVN0824	-	ornithine cyclodeaminase
825	 41.96	0	860769..861800	+	343	13541656	-	TVN0825	-	glucosamine 6-phosphate synthase
826	 42.60	0	861874..862758	+	294	13541657	-	TVN0826	-	3-hydroxyacyl-CoA dehydrogenase
40.87	MEAN

3.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.