IslandPath Analysis: Thermoplasma volcanium GSS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.87   STD DEV: 3.44
Thermoplasma volcanium GSS1, complete genome - 1..1584804
1499 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
672	 36.41	-1	667678..668251	-	191	13541503	-	TVN0672	-	hypothetical protein
673	 40.92	0	668267..668635	-	122	13541504	-	TVN0673	-	hypothetical protein
674	 36.49	-1	669823..671343	+	506	13541505	-	TVN0674	-	MutS-like ATPase involved in mismatch repair
675	 37.72	0	671340..672842	+	500	13541506	-	TVN0675	-	MutS-like ATPase involved in mismatch repair
676	 41.04	0	673748..674383	+	211	13541507	-	TVN0676	-	formylmethanofuran dehydrogenase subunit E
677	 34.93	-1	674771..675523	+	250	13541508	-	TVN0677	-	permease
678	 49.35	+2	676728..678044	+	438	13541509	-	TVN0678	-	integrase/recombinase
679	 48.05	+2	678392..678982	-	196	13541510	-	TVN0679	-	hypothetical protein
680	 44.31	0	680695..680940	+	81	13541511	-	TVN0680	-	integrase/recombinase
681	 42.03	0	681337..684360	+	1007	13541512	-	TVN0681	-	Type II restriction enzyme, methylase subunit
682	 43.45	0	684344..687475	+	1043	13541513	-	TVN0682	-	helicase
683	 35.50	-1	687568..688074	-	168	13541514	-	TVN0683	-	hypothetical protein
684	 42.18	0	689289..689729	+	146	13541515	-	TVN0684	-	hypothetical protein
685	 34.51	-1	689781..691226	+	481	13541516	-	TVN0685	-	Beta-galactosidase
686	 47.58	+1	691296..691625	+	109	13541517	-	TVN0686	-	hypothetical protein
687	 39.01	0	691828..692109	+	93	13541518	-	TVN0687	-	hypothetical protein
688	 40.28	0	692339..692554	+	71	13541519	-	TVN0688	-	hypothetical protein
689	 42.64	0	693675..694007	+	110	13541520	-	TVN0689	-	hypothetical protein
690	 38.01	0	694060..696003	+	647	13541521	-	TVN0690	-	hypothetical protein
691	 37.56	0	696958..697170	+	70	13541522	-	TVN0691	-	transposase
692	 37.38	-1	697684..698004	+	106	13541523	-	TVN0692	-	hypothetical protein
693	 43.65	0	698340..698591	+	83	13541524	-	TVN0693	-	hypothetical protein
694	 40.16	0	698845..699210	+	121	13541525	-	TVN0694	-	hypothetical protein
695	 45.67	+1	699600..700142	+	180	13541526	-	TVN0695	-	site-specific recombinase, DNA invertase Pin-related
696	 43.72	0	700497..700679	+	60	13541527	-	TVN0696	-	AAA ATPase family protein
697	 44.09	0	702334..702900	-	188	13541528	-	TVN0697	-	hypothetical protein
698	 49.88	+2	703424..703840	-	138	13541529	-	TVN0698	-	hypothetical protein
699	 48.28	+2	703837..704973	-	378	13541530	-	TVN0699	-	hypothetical protein
700	 52.82	+2	705358..705711	-	117	13541531	-	TVN0700	-	hypothetical protein
701	 52.85	+2	705804..706346	-	180	13541532	-	TVN0701	-	hypothetical protein
702	 44.65	+1	707052..708014	+	320	13541533	-	TVN0702	-	hypothetical protein
703	 37.29	-1	708255..708911	-	218	13541534	-	TVN0703	-	Serine/threonine protein phosphatase
704	 37.79	0	708898..709548	-	216	13541535	-	TVN0704	-	sugar fermentation stimulation protein A
705	 39.10	0	709660..710526	+	288	13541536	-	TVN0705	-	small-conductance mechanosensitive channel protein
706	 36.32	-1	710523..710924	-	133	13541537	-	TVN0706	-	thioesterase
707	 38.14	0	710951..711241	-	96	13541538	-	TVN0707	-	coiled-coil protein
708	 40.94	0	711315..712958	-	547	13541539	-	TVN0708	-	amino acid transporter
709	 34.27	-1	714418..714843	-	141	13541540	-	TVN0709	-	hypothetical protein
710	 45.22	+1	715045..719175	+	1376	13541541	-	TVN0710	-	hypothetical protein
711	 41.76	0	719265..720035	+	256	13541542	-	TVN0711	-	3-oxoacyl-[acyl-carrier-protein] reductase
712	 34.62	-1	720480..720869	+	129	13541543	-	TVN0712	-	hypothetical protein
713	 37.56	0	720929..721141	+	70	13541544	-	TVN0713	-	hypothetical protein
714	 43.10	0	721251..721670	+	139	13541545	-	TVN0714	-	hypothetical protein
715	 38.68	0	721703..722263	+	186	13541546	-	TVN0715	-	threonine efflux protein
716	 40.79	0	722669..723097	+	142	13541547	-	TVN0716	-	nucleotide-binding protein (UspA-related)
717	 40.63	0	723257..723982	-	241	13541548	-	TVN0717	-	ribose-5-phosphate isomerase A
718	 43.12	0	724374..725804	-	476	13541549	-	TVN0718	-	amino acid transporter
719	 42.60	0	726109..726669	-	186	13541550	-	TVN0719	-	hypothetical protein
720	 30.86	-2	727696..728988	-	430	13541551	-	TVN0720	-	methyltransferase
721	 36.87	-1	730400..731305	+	301	13541552	-	TVN0721	-	major facilitator superfamily permease
722	 41.93	0	732760..733434	-	224	13541553	-	TVN0722	-	restriction endonuclease
723	 30.80	-2	734352..734942	+	196	13541554	-	TVN0723	-	integrase/recombinase
724	 31.33	-2	737684..738181	-	165	13541555	-	TVN0724	-	hypothetical protein
725	 33.33	-2	739837..740145	-	102	13541556	-	TVN0725	-	Type II restriction enzyme, methylase subunit
726	 35.48	-1	740668..741039	+	123	13541557	-	TVN0726	-	integrase/recombinase
727	 43.46	0	741296..742213	+	305	13541558	-	TVN0727	-	esterase
728	 41.98	0	742429..743376	-	315	13541559	-	TVN0728	-	transcription regulator
729	 42.56	0	743399..744493	-	364	13541560	-	TVN0729	-	chorismate synthase
730	 41.40	0	744794..745363	-	189	13541561	-	TVN0730	-	phosphoglycerate mutase
731	 39.97	0	745716..747659	+	647	13541562	-	TVN0731	-	thioredoxin domain-containing protein
732	 43.57	0	747748..749124	+	458	13541563	-	TVN0732	-	cytochrome bd-type quinol oxidase, subunit 1
733	 40.99	0	749130..750122	+	330	13541564	-	TVN0733	-	hypothetical protein
734	 40.97	0	750626..751384	-	252	13541565	-	TVN0734	-	geranylgeranylglyceryl phosphate synthase-like protein
735	 38.52	0	751384..752193	-	269	13541566	-	TVN0735	-	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase
736	 41.89	0	752240..753268	-	342	13541567	-	TVN0736	-	N(2),N(2)-dimethylguanosine tRNA methyltransferase
737	 40.11	0	753265..753810	-	181	13541568	-	TVN0737	-	putative NTPase
738	 41.32	0	753807..754169	-	120	13541569	-	TVN0738	-	hypothetical protein
739	 35.93	-1	754205..756862	-	885	13541570	-	TVN0739	-	DNA helicase II
740	 45.84	+1	757029..758219	+	396	13541571	-	TVN0740	-	metal-dependent carboxypeptidase
741	 41.13	0	758278..758931	-	217	13541572	-	TVN0741	-	hypothetical protein
742	 40.59	0	759000..759302	-	100	13541573	-	TVN0742	-	DNA-directed RNA polymerase subunit M
743	 40.99	0	759485..759889	+	134	13541574	-	TVN0743	-	CoA-binding protein
744	 38.71	0	760262..760633	-	123	13541575	-	TVN0744	-	succinate dehydrogenase, hydrophobic anchor subunit
745	 41.13	0	760633..761055	-	140	13541576	-	TVN0745	-	succinate dehydrogenase, subunit C
746	 43.29	0	761062..761784	-	240	13541577	sdhB	TVN0746	-	succinate dehydrogenase iron-sulfur subunit
747	 43.84	0	761794..763497	-	567	13541578	sdhA	TVN0747	-	succinate dehydrogenase flavoprotein subunit
748	 40.33	0	763616..764458	+	280	13541579	-	TVN0748	-	DMT family permease
749	 37.97	0	764460..764912	-	150	161760541	moaC	TVN0749	-	putative molybdenum cofactor biosynthesis protein C
750	 35.90	-1	765016..765249	-	77	13541581	-	TVN0750	-	hypothetical protein
751	 40.29	0	765628..766116	+	162	13541582	-	TVN0751	-	molybdopterin biosynthesis protein
752	 40.37	0	766521..767543	-	340	13541583	-	TVN0752	-	threonine synthase
753	 38.63	0	767609..768061	-	150	13541584	-	TVN0753	-	hypothetical protein
754	 36.15	-1	768171..769271	+	366	13541585	-	TVN0754	-	hypothetical protein
755	 39.44	0	769333..769512	+	59	13541586	-	TVN0755	-	metal-binding protein
756	 37.97	0	769525..770235	-	236	13541587	-	TVN0756	-	metal-dependent hydrolase
757	 38.69	0	770326..771612	+	428	13541588	-	TVN0757	-	folylpolyglutamate synthase
758	 40.33	0	771819..773033	+	404	13541589	cdc6	TVN0758	-	cell division control protein 6
759	 45.03	+1	773051..774358	-	435	13541590	-	TVN0759	-	glutamate dehydrogenase
760	 44.68	+1	774569..775819	-	416	13541591	-	TVN0760	-	glutamate dehydrogenase
761	 39.04	0	775903..778635	-	910	13541592	leuS	TVN0761	-	leucyl-tRNA synthetase
762	 41.71	0	778593..779141	-	182	13541593	-	TVN0762	-	pyruvoyl-dependent arginine decarboxylase
763	 43.30	0	779361..780822	+	486	13541594	-	TVN0763	-	amino acid transporter
764	 41.97	0	780828..782078	-	416	13541595	-	TVN0764	-	transposase
765	 38.50	0	782068..782480	-	137	13541596	-	TVN0765	-	site-specific integrase-resolvase
766	 38.73	0	782700..782903	+	67	13541597	-	TVN0766	-	hypothetical protein
767	 37.75	0	782917..783822	-	301	13541598	-	TVN0767	-	acetyltransferase
768	 41.50	0	783936..785282	+	448	13541599	-	TVN0768	-	malate oxidoreductase (malic enzyme)
769	 37.15	-1	785263..785733	+	156	13541600	-	TVN0769	-	acetyltransferase
770	 44.00	0	786138..786887	-	249	13541601	-	TVN0770	-	hypothetical protein
771	 39.02	0	787296..787823	+	175	13541602	-	TVN0771	-	nicotinamidase-like amidase
40.87	MEAN

3.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.