IslandPath Analysis: Thermoplasma volcanium GSS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.87   STD DEV: 3.44
Thermoplasma volcanium GSS1, complete genome - 1..1584804
1499 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
618	 38.41	0	610740..611015	-	91	13541449	ef1B	TVN0618	-	elongation factor 1-beta
619	 45.83	+1	611012..611179	-	55	13541450	-	TVN0619	-	RNA-binding protein involved in translation
620	 41.96	0	611334..612677	+	447	13541451	-	TVN0620	-	phosphomannomutase
621	 39.33	0	612669..613268	-	199	13541452	-	TVN0621	-	phosphatidylglycerophosphate synthase
622	 38.53	0	613288..613749	-	153	13541453	-	TVN0622	-	nucleotide kinase (related to CMP and AMP kinase)
623	 40.81	0	613788..615125	-	445	13541454	-	TVN0623	-	purine-cytosine permease
624	 36.79	-1	615221..615712	+	163	13541455	-	TVN0624	-	transcription regulator
625	 43.20	0	615821..617128	+	435	13541456	-	TVN0625	-	phosphoribosylamine--glycine ligase
626	 42.59	0	617441..617710	+	89	13541457	-	TVN0626	-	hypothetical protein
627	 41.87	0	617864..618226	+	120	13541458	-	TVN0627	-	ArsR family transcriptional regulator
628	 40.13	0	618303..620303	+	666	13541459	-	TVN0628	-	hypothetical protein
629	 40.17	0	620800..621501	+	233	13541460	-	TVN0629	-	SAM-dependent methyltransfera
630	 43.20	0	621603..623447	+	614	13541461	-	TVN0630	-	Mg-chelatase, I and D subunits
631	 41.83	0	623523..624440	+	305	13541462	pyrB	TVN0631	-	aspartate carbamoyltransferase catalytic subunit
632	 38.34	0	624442..624900	+	152	13541463	-	TVN0632	-	aspartate carbamoyltransferase regulatory subunit
633	 37.63	0	625033..625731	-	232	13541464	hemD	TVN0633	-	uroporphyrinogen-III synthase
634	 38.81	0	625731..626624	-	297	13541465	hemC	TVN0634	-	porphobilinogen deaminase
635	 41.81	0	626624..627886	-	420	13541466	-	TVN0635	-	glutamate-1-semialdehyde aminotransferase
636	 41.14	0	628081..628554	+	157	13541467	dcd	TVN0636	-	deoxycytidine triphosphate deaminase
637	 40.76	0	628696..629193	+	165	13541468	-	TVN0637	-	Acyl-CoA hydrolase
638	 38.58	0	629529..630443	+	304	13541469	-	TVN0638	-	hypothetical protein
639	 35.74	-1	630455..632449	+	664	13541470	-	TVN0639	-	ATPase
640	 36.98	-1	632516..632707	-	63	13541471	-	TVN0640	-	hypothetical protein
641	 45.16	+1	632920..633900	+	326	13541472	-	TVN0641	-	HSP70 class molecular chaperone involved in cell morphogenesis
642	 33.33	-2	633909..634229	+	106	13541473	-	TVN0642	-	hypothetical protein
643	 37.93	0	634882..635229	+	115	13541474	-	TVN0643	-	hypothetical protein
644	 40.62	0	635240..636076	+	278	13541475	-	TVN0644	-	permease
645	 39.98	0	636160..641301	+	1713	13541476	-	TVN0645	-	helicase (Lhr-related)
646	 36.42	-1	641348..641800	+	150	13541477	-	TVN0646	-	nucleotide-binding protein (UspA-related)
647	 37.72	0	641871..642098	+	75	13541478	rps17E	TVN0647	-	30S ribosomal protein S17e
648	 34.09	-1	642101..642496	+	131	13541479	-	TVN0648	-	hypothetical protein
649	 45.07	+1	642581..643747	+	388	13541480	-	TVN0649	-	acetyl-CoA acetyltransferase
650	 42.66	0	643821..645074	+	417	13541481	-	TVN0650	-	glycine oxidase (deaminating)
651	 37.53	0	645211..645996	+	261	13541482	-	TVN0651	-	hypothetical protein
652	 37.37	-1	645988..646284	-	98	13541483	-	TVN0652	-	hypothetical protein
653	 43.48	0	646436..647983	+	515	13541484	-	TVN0653	-	NAD-dependent aldehyde dehydrogenase
654	 38.38	0	648029..649573	+	514	13541485	-	TVN0654	-	O-antigen and teichoic acid export protein
655	 39.55	0	649580..650206	-	208	13541486	-	TVN0655	-	translation initiation factor IF-2 subunit beta
656	 38.13	0	650357..650773	+	138	13541487	-	TVN0656	-	hypothetical protein
657	 37.41	-1	650770..651504	+	244	13541488	-	TVN0657	-	cell division GTPase
658	 41.20	0	651564..651995	-	143	13541489	-	TVN0658	-	transcription regulator
659	 39.68	0	652127..653071	+	314	13541490	-	TVN0659	-	asparagine synthetase A
660	 34.00	-2	653073..653675	-	200	13541491	-	TVN0660	-	DNA polymerase elongation subunit
661	 41.84	0	653656..655077	-	473	13541492	-	TVN0661	-	multidrug efflux permease
662	 38.77	0	655098..655520	-	140	13541493	-	TVN0662	-	CBS domain-containing protein
663	 43.24	0	656015..656650	+	211	13541494	-	TVN0663	-	proteasome protease subunit beta
664	 45.00	+1	656692..658611	+	639	13541495	-	TVN0664	-	metal-dependent RNase
665	 40.51	0	658721..660406	+	561	13541496	-	TVN0665	-	hypothetical protein
666	 42.26	0	660430..661101	-	223	13541497	-	TVN0666	-	putative translaldolase
667	 41.32	0	661085..662035	-	316	13541498	-	TVN0667	-	transketolase
668	 44.65	+1	662032..662853	-	273	13541499	-	TVN0668	-	transketolase
669	 39.56	0	663048..663914	-	288	13541500	-	TVN0669	-	dihydrodipicolinate synthase
670	 43.22	0	664080..665333	-	417	13541501	-	TVN0670	-	Acyl-CoA dehydrogenase
671	 39.05	0	665344..666900	-	518	13541502	-	TVN0671	-	Acyl-CoA synthetase (AMP-forming)
672	 36.41	-1	667678..668251	-	191	13541503	-	TVN0672	-	hypothetical protein
673	 40.92	0	668267..668635	-	122	13541504	-	TVN0673	-	hypothetical protein
674	 36.49	-1	669823..671343	+	506	13541505	-	TVN0674	-	MutS-like ATPase involved in mismatch repair
675	 37.72	0	671340..672842	+	500	13541506	-	TVN0675	-	MutS-like ATPase involved in mismatch repair
676	 41.04	0	673748..674383	+	211	13541507	-	TVN0676	-	formylmethanofuran dehydrogenase subunit E
677	 34.93	-1	674771..675523	+	250	13541508	-	TVN0677	-	permease
678	 49.35	+2	676728..678044	+	438	13541509	-	TVN0678	-	integrase/recombinase
679	 48.05	+2	678392..678982	-	196	13541510	-	TVN0679	-	hypothetical protein
680	 44.31	0	680695..680940	+	81	13541511	-	TVN0680	-	integrase/recombinase
681	 42.03	0	681337..684360	+	1007	13541512	-	TVN0681	-	Type II restriction enzyme, methylase subunit
682	 43.45	0	684344..687475	+	1043	13541513	-	TVN0682	-	helicase
683	 35.50	-1	687568..688074	-	168	13541514	-	TVN0683	-	hypothetical protein
684	 42.18	0	689289..689729	+	146	13541515	-	TVN0684	-	hypothetical protein
685	 34.51	-1	689781..691226	+	481	13541516	-	TVN0685	-	Beta-galactosidase
686	 47.58	+1	691296..691625	+	109	13541517	-	TVN0686	-	hypothetical protein
687	 39.01	0	691828..692109	+	93	13541518	-	TVN0687	-	hypothetical protein
688	 40.28	0	692339..692554	+	71	13541519	-	TVN0688	-	hypothetical protein
689	 42.64	0	693675..694007	+	110	13541520	-	TVN0689	-	hypothetical protein
690	 38.01	0	694060..696003	+	647	13541521	-	TVN0690	-	hypothetical protein
691	 37.56	0	696958..697170	+	70	13541522	-	TVN0691	-	transposase
692	 37.38	-1	697684..698004	+	106	13541523	-	TVN0692	-	hypothetical protein
693	 43.65	0	698340..698591	+	83	13541524	-	TVN0693	-	hypothetical protein
694	 40.16	0	698845..699210	+	121	13541525	-	TVN0694	-	hypothetical protein
695	 45.67	+1	699600..700142	+	180	13541526	-	TVN0695	-	site-specific recombinase, DNA invertase Pin-related
696	 43.72	0	700497..700679	+	60	13541527	-	TVN0696	-	AAA ATPase family protein
697	 44.09	0	702334..702900	-	188	13541528	-	TVN0697	-	hypothetical protein
698	 49.88	+2	703424..703840	-	138	13541529	-	TVN0698	-	hypothetical protein
699	 48.28	+2	703837..704973	-	378	13541530	-	TVN0699	-	hypothetical protein
700	 52.82	+2	705358..705711	-	117	13541531	-	TVN0700	-	hypothetical protein
701	 52.85	+2	705804..706346	-	180	13541532	-	TVN0701	-	hypothetical protein
702	 44.65	+1	707052..708014	+	320	13541533	-	TVN0702	-	hypothetical protein
703	 37.29	-1	708255..708911	-	218	13541534	-	TVN0703	-	Serine/threonine protein phosphatase
704	 37.79	0	708898..709548	-	216	13541535	-	TVN0704	-	sugar fermentation stimulation protein A
705	 39.10	0	709660..710526	+	288	13541536	-	TVN0705	-	small-conductance mechanosensitive channel protein
706	 36.32	-1	710523..710924	-	133	13541537	-	TVN0706	-	thioesterase
707	 38.14	0	710951..711241	-	96	13541538	-	TVN0707	-	coiled-coil protein
708	 40.94	0	711315..712958	-	547	13541539	-	TVN0708	-	amino acid transporter
709	 34.27	-1	714418..714843	-	141	13541540	-	TVN0709	-	hypothetical protein
710	 45.22	+1	715045..719175	+	1376	13541541	-	TVN0710	-	hypothetical protein
711	 41.76	0	719265..720035	+	256	13541542	-	TVN0711	-	3-oxoacyl-[acyl-carrier-protein] reductase
712	 34.62	-1	720480..720869	+	129	13541543	-	TVN0712	-	hypothetical protein
713	 37.56	0	720929..721141	+	70	13541544	-	TVN0713	-	hypothetical protein
714	 43.10	0	721251..721670	+	139	13541545	-	TVN0714	-	hypothetical protein
715	 38.68	0	721703..722263	+	186	13541546	-	TVN0715	-	threonine efflux protein
716	 40.79	0	722669..723097	+	142	13541547	-	TVN0716	-	nucleotide-binding protein (UspA-related)
717	 40.63	0	723257..723982	-	241	13541548	-	TVN0717	-	ribose-5-phosphate isomerase A
40.87	MEAN

3.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.