IslandPath Analysis: Thermoplasma volcanium GSS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.87   STD DEV: 3.44
Thermoplasma volcanium GSS1, complete genome - 1..1584804
1499 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
577	 44.79	+1	563624..565438	-	604	13541408	-	TVN0577	-	indolepyruvate:ferredoxin oxidoreductase, alpha and beta subunits
578	 40.77	0	565645..566451	+	268	13541409	-	TVN0578	-	FKBP-type peptidyl-prolyl cis-trans isomerase
579	 42.50	0	566438..567190	+	250	13541410	-	TVN0579	-	rRNA methylase
580	 36.42	-1	567165..567488	+	107	13541411	-	TVN0580	-	hypothetical protein
581	 41.07	0	568043..569632	+	529	13541412	-	TVN0581	-	Fe-S oxidoreductase
582	 43.29	0	569675..570508	+	277	13541413	-	TVN0582	-	hypothetical protein
583	 39.91	0	570518..571216	+	232	13541414	-	TVN0583	-	hypothetical protein
584	 38.39	0	571194..572399	-	401	13541415	-	TVN0584	-	Serine/threonine protein kinase
585	 43.93	0	572464..573237	-	257	13541416	-	TVN0585	-	competence damage-inducible protein A
586	 41.37	0	573246..573929	-	227	13541417	pyrH	TVN0586	-	uridylate kinase
587	 40.58	0	575161..575781	+	206	13541418	-	TVN0587	-	transposase
588	 42.39	0	576190..577437	+	415	13541419	-	TVN0588	-	peptide chain release factor 1
589	 42.58	0	577443..578372	+	309	13541420	-	TVN0589	-	cysteine synthase
590	 37.75	0	578390..579613	+	407	13541421	hemA	TVN0590	-	glutamyl-tRNA reductase
591	 41.07	0	579516..580265	-	249	13541422	-	TVN0591	-	ICC-like phosphoesterase
592	 44.07	0	580405..581550	-	381	13541423	-	TVN0592	-	hypothetical protein
593	 39.53	0	581547..582449	-	300	13541424	-	TVN0593	-	Fe-S oxidoreductase
594	 44.72	+1	582526..583737	-	403	13541425	-	TVN0594	-	major facilitator superfamily permease
595	 44.33	+1	584082..585218	-	378	13541426	-	TVN0595	-	Fe-S oxidoreductase
596	 42.90	0	585220..586599	-	459	13541427	-	TVN0596	-	FAD/FMN-containing dehydrogenase
597	 36.65	-1	586833..590237	+	1134	13541428	-	TVN0597	-	hypothetical protein
598	 37.97	0	590215..590688	+	157	13541429	-	TVN0598	-	phosphatase
599	 40.11	0	590669..591982	-	437	13541430	-	TVN0599	-	DNA-binding protein
600	 39.12	0	591988..592764	-	258	13541431	-	TVN0600	-	undecaprenyl pyrophosphate synthase
601	 35.51	-1	592854..593312	-	152	13541432	-	TVN0601	-	hypothetical protein
602	 37.63	0	593418..593813	+	131	13541433	-	TVN0602	-	hypothetical protein
603	 37.91	0	593814..594797	+	327	13541434	-	TVN0603	-	transcription regulator (HTH)
604	 40.74	0	594890..595213	+	107	13541435	-	TVN0604	-	transcription regulator
605	 38.10	0	595236..596849	+	537	13541436	pheT	TVN0605	-	phenylalanyl-tRNA synthetase subunit beta
606	 38.43	0	596843..597352	-	169	13541437	-	TVN0606	-	acetyltransferase
607	 45.03	+1	597888..598631	+	247	13541438	-	TVN0607	-	flagellin
608	 38.49	0	598670..599134	+	154	13541439	-	TVN0608	-	flagellar protein C
609	 42.35	0	599131..599784	+	217	13541440	-	TVN0609	-	flagellar protein E
610	 33.82	-2	599774..600187	+	137	13541441	-	TVN0610	-	flagellar protein F
611	 42.79	0	600188..600631	+	147	13541442	-	TVN0611	-	flagellar protein G
612	 43.90	0	600636..601307	+	223	13541443	-	TVN0612	-	flagellar accessory protein FlaH
613	 42.04	0	601313..602920	+	535	13541444	-	TVN0613	-	ATPase
614	 39.66	0	602910..604568	+	552	13541445	-	TVN0614	-	flagellar assembly protein J
615	 38.85	0	605411..609019	+	1202	13541446	-	TVN0615	-	TPR repeat-containing protein
616	 41.62	0	609064..609642	+	192	13541447	-	TVN0616	-	Zn-dependent protease
617	 37.91	0	609673..610743	-	356	13541448	-	TVN0617	-	glycosyltransferase
618	 38.41	0	610740..611015	-	91	13541449	ef1B	TVN0618	-	elongation factor 1-beta
619	 45.83	+1	611012..611179	-	55	13541450	-	TVN0619	-	RNA-binding protein involved in translation
620	 41.96	0	611334..612677	+	447	13541451	-	TVN0620	-	phosphomannomutase
621	 39.33	0	612669..613268	-	199	13541452	-	TVN0621	-	phosphatidylglycerophosphate synthase
622	 38.53	0	613288..613749	-	153	13541453	-	TVN0622	-	nucleotide kinase (related to CMP and AMP kinase)
623	 40.81	0	613788..615125	-	445	13541454	-	TVN0623	-	purine-cytosine permease
624	 36.79	-1	615221..615712	+	163	13541455	-	TVN0624	-	transcription regulator
625	 43.20	0	615821..617128	+	435	13541456	-	TVN0625	-	phosphoribosylamine--glycine ligase
626	 42.59	0	617441..617710	+	89	13541457	-	TVN0626	-	hypothetical protein
627	 41.87	0	617864..618226	+	120	13541458	-	TVN0627	-	ArsR family transcriptional regulator
628	 40.13	0	618303..620303	+	666	13541459	-	TVN0628	-	hypothetical protein
629	 40.17	0	620800..621501	+	233	13541460	-	TVN0629	-	SAM-dependent methyltransfera
630	 43.20	0	621603..623447	+	614	13541461	-	TVN0630	-	Mg-chelatase, I and D subunits
631	 41.83	0	623523..624440	+	305	13541462	pyrB	TVN0631	-	aspartate carbamoyltransferase catalytic subunit
632	 38.34	0	624442..624900	+	152	13541463	-	TVN0632	-	aspartate carbamoyltransferase regulatory subunit
633	 37.63	0	625033..625731	-	232	13541464	hemD	TVN0633	-	uroporphyrinogen-III synthase
634	 38.81	0	625731..626624	-	297	13541465	hemC	TVN0634	-	porphobilinogen deaminase
635	 41.81	0	626624..627886	-	420	13541466	-	TVN0635	-	glutamate-1-semialdehyde aminotransferase
636	 41.14	0	628081..628554	+	157	13541467	dcd	TVN0636	-	deoxycytidine triphosphate deaminase
637	 40.76	0	628696..629193	+	165	13541468	-	TVN0637	-	Acyl-CoA hydrolase
638	 38.58	0	629529..630443	+	304	13541469	-	TVN0638	-	hypothetical protein
639	 35.74	-1	630455..632449	+	664	13541470	-	TVN0639	-	ATPase
640	 36.98	-1	632516..632707	-	63	13541471	-	TVN0640	-	hypothetical protein
641	 45.16	+1	632920..633900	+	326	13541472	-	TVN0641	-	HSP70 class molecular chaperone involved in cell morphogenesis
642	 33.33	-2	633909..634229	+	106	13541473	-	TVN0642	-	hypothetical protein
643	 37.93	0	634882..635229	+	115	13541474	-	TVN0643	-	hypothetical protein
644	 40.62	0	635240..636076	+	278	13541475	-	TVN0644	-	permease
645	 39.98	0	636160..641301	+	1713	13541476	-	TVN0645	-	helicase (Lhr-related)
646	 36.42	-1	641348..641800	+	150	13541477	-	TVN0646	-	nucleotide-binding protein (UspA-related)
647	 37.72	0	641871..642098	+	75	13541478	rps17E	TVN0647	-	30S ribosomal protein S17e
648	 34.09	-1	642101..642496	+	131	13541479	-	TVN0648	-	hypothetical protein
649	 45.07	+1	642581..643747	+	388	13541480	-	TVN0649	-	acetyl-CoA acetyltransferase
650	 42.66	0	643821..645074	+	417	13541481	-	TVN0650	-	glycine oxidase (deaminating)
651	 37.53	0	645211..645996	+	261	13541482	-	TVN0651	-	hypothetical protein
652	 37.37	-1	645988..646284	-	98	13541483	-	TVN0652	-	hypothetical protein
653	 43.48	0	646436..647983	+	515	13541484	-	TVN0653	-	NAD-dependent aldehyde dehydrogenase
654	 38.38	0	648029..649573	+	514	13541485	-	TVN0654	-	O-antigen and teichoic acid export protein
655	 39.55	0	649580..650206	-	208	13541486	-	TVN0655	-	translation initiation factor IF-2 subunit beta
656	 38.13	0	650357..650773	+	138	13541487	-	TVN0656	-	hypothetical protein
657	 37.41	-1	650770..651504	+	244	13541488	-	TVN0657	-	cell division GTPase
658	 41.20	0	651564..651995	-	143	13541489	-	TVN0658	-	transcription regulator
659	 39.68	0	652127..653071	+	314	13541490	-	TVN0659	-	asparagine synthetase A
660	 34.00	-2	653073..653675	-	200	13541491	-	TVN0660	-	DNA polymerase elongation subunit
661	 41.84	0	653656..655077	-	473	13541492	-	TVN0661	-	multidrug efflux permease
662	 38.77	0	655098..655520	-	140	13541493	-	TVN0662	-	CBS domain-containing protein
663	 43.24	0	656015..656650	+	211	13541494	-	TVN0663	-	proteasome protease subunit beta
664	 45.00	+1	656692..658611	+	639	13541495	-	TVN0664	-	metal-dependent RNase
665	 40.51	0	658721..660406	+	561	13541496	-	TVN0665	-	hypothetical protein
666	 42.26	0	660430..661101	-	223	13541497	-	TVN0666	-	putative translaldolase
667	 41.32	0	661085..662035	-	316	13541498	-	TVN0667	-	transketolase
668	 44.65	+1	662032..662853	-	273	13541499	-	TVN0668	-	transketolase
669	 39.56	0	663048..663914	-	288	13541500	-	TVN0669	-	dihydrodipicolinate synthase
670	 43.22	0	664080..665333	-	417	13541501	-	TVN0670	-	Acyl-CoA dehydrogenase
671	 39.05	0	665344..666900	-	518	13541502	-	TVN0671	-	Acyl-CoA synthetase (AMP-forming)
672	 36.41	-1	667678..668251	-	191	13541503	-	TVN0672	-	hypothetical protein
673	 40.92	0	668267..668635	-	122	13541504	-	TVN0673	-	hypothetical protein
674	 36.49	-1	669823..671343	+	506	13541505	-	TVN0674	-	MutS-like ATPase involved in mismatch repair
675	 37.72	0	671340..672842	+	500	13541506	-	TVN0675	-	MutS-like ATPase involved in mismatch repair
676	 41.04	0	673748..674383	+	211	13541507	-	TVN0676	-	formylmethanofuran dehydrogenase subunit E
40.87	MEAN

3.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.