IslandPath Analysis: Thermoplasma volcanium GSS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.87   STD DEV: 3.44
Thermoplasma volcanium GSS1, complete genome - 1..1584804
1499 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
530	 43.19	0	520765..521991	+	408	13541361	pgk	TVN0530	-	phosphoglycerate kinase
531	 36.64	-1	521996..522388	+	130	13541362	-	TVN0531	-	prefoldin subunit alpha
532	 39.47	0	522395..523258	+	287	13541363	-	TVN0532	-	Signal recognition particle GTPase
533	 38.58	0	523302..523625	+	107	13541364	-	TVN0533	-	nucleic acid binding protein
534	 40.46	0	523625..524887	+	420	13541365	-	TVN0534	-	replication factor C large subunit
535	 45.29	+1	524958..525551	+	197	13541366	-	TVN0535	-	50S ribosomal protein L15e
536	 42.44	0	525832..526731	+	299	13541367	-	TVN0536	-	polysaccharide deacetylase
537	 42.05	0	526852..527241	+	129	13541368	-	TVN0537	-	translation initiation factor IF-5A
538	 40.68	0	527199..528110	+	303	13541369	-	TVN0538	-	agmatinase
539	 44.63	+1	528148..528678	-	176	13541370	rpl10e	TVN0539	-	50S ribosomal protein L10e
540	 39.51	0	528853..529095	-	80	13541371	-	TVN0540	-	hypothetical protein
541	 41.43	0	529230..531155	+	641	13541372	gyrB	TVN0541	-	DNA gyrase subunit B
542	 42.71	0	531167..533545	+	792	13541373	-	TVN0542	-	DNA gyrase subunit A
543	 40.03	0	533595..534221	+	208	13541374	-	TVN0543	-	nicotinamidase-like amidase
544	 43.08	0	534246..535415	+	389	13541375	-	TVN0544	-	ABC-type molybdate transport system, solute-binding component
545	 41.51	0	535417..536211	+	264	13541376	-	TVN0545	-	ABC-type molybdate transport system, permease component
546	 40.53	0	536198..537100	+	300	13541377	-	TVN0546	-	ABC-type molybdate transporter, ATPase component
547	 39.97	0	537452..538204	-	250	13541378	-	TVN0547	-	cell wall biosynthesis glycosyltransferase
548	 39.15	0	538221..538409	-	62	13541379	-	TVN0548	-	hypothetical protein
549	 40.50	0	538469..539431	-	320	13541380	-	TVN0549	-	hypothetical protein
550	 40.18	0	539478..539813	-	111	13541381	-	TVN0550	-	nucleic acid binding protein
551	 37.78	0	539914..540138	+	74	13541382	-	TVN0551	-	phosphoribosylformylglycinamidine synthase
552	 38.25	0	540271..541998	+	575	13541383	-	TVN0552	-	hypothetical protein
553	 38.26	0	542231..542920	+	229	13541384	-	TVN0553	-	hypothetical protein
554	 45.28	+1	542914..543273	-	119	13541385	-	TVN0554	-	hypothetical protein
555	 40.36	0	543386..543769	+	127	13541386	-	TVN0555	-	30S ribosomal protein S8e
556	 41.57	0	543776..544030	+	84	13541387	-	TVN0556	-	Signal recognition particle 19 kDa protein
557	 39.63	0	544022..545005	-	327	13541388	-	TVN0557	-	DNA primase large subunit
558	 41.64	0	545002..546084	-	360	13541389	-	TVN0558	-	putative proline dipeptidase
559	 40.60	0	546468..547169	+	233	13541390	radB	TVN0559	-	DNA repair and recombination protein RadB
560	 40.87	0	547159..548166	+	335	13541391	-	TVN0560	-	flap endonuclease-1
561	 40.46	0	548252..549499	+	415	13541392	-	TVN0561	-	major facilitator superfamily permease
562	 45.74	+1	549581..550096	+	171	13541393	rps13p	TVN0562	-	30S ribosomal protein S13P
563	 44.28	0	550107..550709	+	200	13541394	rps4p	TVN0563	-	30S ribosomal protein S4
564	 45.36	+1	550687..551085	+	132	13541395	rps11p	TVN0564	-	30S ribosomal protein S11P
565	 43.26	0	551086..551901	+	271	13541396	-	TVN0565	-	DNA-directed RNA polymerase subunit D
566	 41.31	0	552135..553325	+	396	13541397	-	TVN0566	-	molybdopterin biosynthesis protein
567	 40.88	0	553331..555211	+	626	13541398	-	TVN0567	-	molybdopterin biosynthesis protein
568	 41.16	0	555376..556167	-	263	13541399	-	TVN0568	-	hypothetical protein
569	 37.36	-1	556254..556526	+	90	13541400	-	TVN0569	-	molybdopterin converting factor, small subunit
570	 41.48	0	556601..557275	+	224	13541401	-	TVN0570	-	transcription initiation factor IIB
571	 44.62	+1	557379..558521	-	380	13541402	-	TVN0571	-	aminotransferase
572	 42.98	0	558589..559821	-	410	13541403	-	TVN0572	-	hypothetical protein
573	 42.11	0	559784..561151	-	455	13541404	-	TVN0573	-	DNA helicase
574	 40.58	0	561228..562373	+	381	13541405	-	TVN0574	-	SAM-dependent methyltransferase
575	 40.65	0	562457..563044	+	195	13541406	ribA	TVN0575	-	GTP cyclohydrolase II
576	 42.74	0	563052..563636	-	194	13541407	-	TVN0576	-	indolepyruvate oxidoreductase subunit B
577	 44.79	+1	563624..565438	-	604	13541408	-	TVN0577	-	indolepyruvate:ferredoxin oxidoreductase, alpha and beta subunits
578	 40.77	0	565645..566451	+	268	13541409	-	TVN0578	-	FKBP-type peptidyl-prolyl cis-trans isomerase
579	 42.50	0	566438..567190	+	250	13541410	-	TVN0579	-	rRNA methylase
580	 36.42	-1	567165..567488	+	107	13541411	-	TVN0580	-	hypothetical protein
581	 41.07	0	568043..569632	+	529	13541412	-	TVN0581	-	Fe-S oxidoreductase
582	 43.29	0	569675..570508	+	277	13541413	-	TVN0582	-	hypothetical protein
583	 39.91	0	570518..571216	+	232	13541414	-	TVN0583	-	hypothetical protein
584	 38.39	0	571194..572399	-	401	13541415	-	TVN0584	-	Serine/threonine protein kinase
585	 43.93	0	572464..573237	-	257	13541416	-	TVN0585	-	competence damage-inducible protein A
586	 41.37	0	573246..573929	-	227	13541417	pyrH	TVN0586	-	uridylate kinase
587	 40.58	0	575161..575781	+	206	13541418	-	TVN0587	-	transposase
588	 42.39	0	576190..577437	+	415	13541419	-	TVN0588	-	peptide chain release factor 1
589	 42.58	0	577443..578372	+	309	13541420	-	TVN0589	-	cysteine synthase
590	 37.75	0	578390..579613	+	407	13541421	hemA	TVN0590	-	glutamyl-tRNA reductase
591	 41.07	0	579516..580265	-	249	13541422	-	TVN0591	-	ICC-like phosphoesterase
592	 44.07	0	580405..581550	-	381	13541423	-	TVN0592	-	hypothetical protein
593	 39.53	0	581547..582449	-	300	13541424	-	TVN0593	-	Fe-S oxidoreductase
594	 44.72	+1	582526..583737	-	403	13541425	-	TVN0594	-	major facilitator superfamily permease
595	 44.33	+1	584082..585218	-	378	13541426	-	TVN0595	-	Fe-S oxidoreductase
596	 42.90	0	585220..586599	-	459	13541427	-	TVN0596	-	FAD/FMN-containing dehydrogenase
597	 36.65	-1	586833..590237	+	1134	13541428	-	TVN0597	-	hypothetical protein
598	 37.97	0	590215..590688	+	157	13541429	-	TVN0598	-	phosphatase
599	 40.11	0	590669..591982	-	437	13541430	-	TVN0599	-	DNA-binding protein
600	 39.12	0	591988..592764	-	258	13541431	-	TVN0600	-	undecaprenyl pyrophosphate synthase
601	 35.51	-1	592854..593312	-	152	13541432	-	TVN0601	-	hypothetical protein
602	 37.63	0	593418..593813	+	131	13541433	-	TVN0602	-	hypothetical protein
603	 37.91	0	593814..594797	+	327	13541434	-	TVN0603	-	transcription regulator (HTH)
604	 40.74	0	594890..595213	+	107	13541435	-	TVN0604	-	transcription regulator
605	 38.10	0	595236..596849	+	537	13541436	pheT	TVN0605	-	phenylalanyl-tRNA synthetase subunit beta
606	 38.43	0	596843..597352	-	169	13541437	-	TVN0606	-	acetyltransferase
607	 45.03	+1	597888..598631	+	247	13541438	-	TVN0607	-	flagellin
608	 38.49	0	598670..599134	+	154	13541439	-	TVN0608	-	flagellar protein C
609	 42.35	0	599131..599784	+	217	13541440	-	TVN0609	-	flagellar protein E
610	 33.82	-2	599774..600187	+	137	13541441	-	TVN0610	-	flagellar protein F
611	 42.79	0	600188..600631	+	147	13541442	-	TVN0611	-	flagellar protein G
612	 43.90	0	600636..601307	+	223	13541443	-	TVN0612	-	flagellar accessory protein FlaH
613	 42.04	0	601313..602920	+	535	13541444	-	TVN0613	-	ATPase
614	 39.66	0	602910..604568	+	552	13541445	-	TVN0614	-	flagellar assembly protein J
615	 38.85	0	605411..609019	+	1202	13541446	-	TVN0615	-	TPR repeat-containing protein
616	 41.62	0	609064..609642	+	192	13541447	-	TVN0616	-	Zn-dependent protease
617	 37.91	0	609673..610743	-	356	13541448	-	TVN0617	-	glycosyltransferase
618	 38.41	0	610740..611015	-	91	13541449	ef1B	TVN0618	-	elongation factor 1-beta
619	 45.83	+1	611012..611179	-	55	13541450	-	TVN0619	-	RNA-binding protein involved in translation
620	 41.96	0	611334..612677	+	447	13541451	-	TVN0620	-	phosphomannomutase
621	 39.33	0	612669..613268	-	199	13541452	-	TVN0621	-	phosphatidylglycerophosphate synthase
622	 38.53	0	613288..613749	-	153	13541453	-	TVN0622	-	nucleotide kinase (related to CMP and AMP kinase)
623	 40.81	0	613788..615125	-	445	13541454	-	TVN0623	-	purine-cytosine permease
624	 36.79	-1	615221..615712	+	163	13541455	-	TVN0624	-	transcription regulator
625	 43.20	0	615821..617128	+	435	13541456	-	TVN0625	-	phosphoribosylamine--glycine ligase
626	 42.59	0	617441..617710	+	89	13541457	-	TVN0626	-	hypothetical protein
627	 41.87	0	617864..618226	+	120	13541458	-	TVN0627	-	ArsR family transcriptional regulator
628	 40.13	0	618303..620303	+	666	13541459	-	TVN0628	-	hypothetical protein
629	 40.17	0	620800..621501	+	233	13541460	-	TVN0629	-	SAM-dependent methyltransfera
40.87	MEAN

3.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.