IslandPath Analysis: Thermoplasma volcanium GSS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.87   STD DEV: 3.44
Thermoplasma volcanium GSS1, complete genome - 1..1584804
1499 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
407	 39.14	0	396861..397721	-	286	13541238	ubiA	TVN0407	-	prenyltransferase
408	 43.22	0	397730..399175	-	481	13541239	-	TVN0408	-	4-hydroxybenzoate decarboxylase
409	 42.12	0	399197..400561	-	454	13541240	-	TVN0409	-	cobyrinic acid a,c-diamide synthase
410	 40.34	0	400558..401313	-	251	13541241	-	TVN0410	-	hypothetical protein
411	 39.68	0	401285..401473	-	62	13541242	-	TVN0411	-	H/ACA RNA-protein complex component Nop10p
412	 42.48	0	401470..402234	-	254	13541243	-	TVN0412	-	translation initiation factor IF-2 subunit alpha
413	 42.93	0	402231..402428	-	65	13541244	rps27e	TVN0413	-	30S ribosomal protein S27e
414	 44.68	+1	402431..402712	-	93	13541245	rpl44e	TVN0414	-	50S ribosomal protein L44e
415	 40.62	0	403403..403690	-	95	13541246	-	TVN0415	-	hypothetical protein
416	 38.52	0	404043..404408	+	121	13541247	-	TVN0416	-	hypothetical protein
417	 42.70	0	404401..405222	-	273	13541248	-	TVN0417	-	spermidine synthase
418	 42.66	0	405413..406345	+	310	13541249	-	TVN0418	-	putative deoxyhypusine synthase
419	 41.61	0	406476..406934	+	152	13541250	-	TVN0419	-	peroxiredoxin
420	 47.94	+2	407122..407436	-	104	13541251	rpl12p	TVN0420	-	50S ribosomal protein L12P
421	 42.86	0	407450..408394	-	314	13541252	rplP0	TVN0421	-	acidic ribosomal protein P0
422	 43.73	0	408391..409044	-	217	13541253	rpl1P	TVN0422	-	50S ribosomal protein L1P
423	 45.70	+1	409059..409535	-	158	13541254	rpl11p	TVN0423	-	50S ribosomal protein L11P
424	 44.74	+1	409698..410258	+	186	13541255	-	TVN0424	-	intracellular protease
425	 39.08	0	410584..411609	+	341	13541256	-	TVN0425	-	hypothetical protein
426	 39.19	0	411662..412771	-	369	13541257	-	TVN0426	-	mevalonate pyrophosphate decarboxylase
427	 42.81	0	414098..414403	+	101	13541258	-	TVN0427	-	hypothetical protein
428	 42.54	0	415361..417271	-	636	13541259	-	TVN0428	-	hypothetical protein
429	 40.64	0	417372..419177	+	601	13541260	-	TVN0429	-	glycogen debranching protein
430	 42.34	0	419174..420283	+	369	13541261	-	TVN0430	-	glycosyltransferase
431	 41.07	0	420280..421416	+	378	13541262	-	TVN0431	-	Alpha-amylase
432	 46.06	+1	421440..422264	+	274	13541263	-	TVN0432	-	asparaginase
433	 45.36	+1	422270..422635	+	121	13541264	-	TVN0433	-	hypothetical protein
434	 38.14	0	422661..423014	-	117	13541265	-	TVN0434	-	hypothetical protein
435	 39.37	0	423096..424040	-	314	13541266	-	TVN0435	-	nucleoside-diphosphate-sugar pyrophosphorylase
436	 44.54	+1	424218..425555	+	445	13541267	-	TVN0436	-	major facilitator superfamily permease
437	 45.10	+1	425663..426886	-	407	13541268	-	TVN0437	-	RNA processing exonuclease
438	 42.25	0	426892..427665	-	257	13541269	-	TVN0438	-	5'-methylthioadenosine phosphorylase II
439	 40.08	0	427721..428431	-	236	13541270	-	TVN0439	-	asparagine synthase
440	 43.71	0	428481..430262	+	593	13541271	-	TVN0440	-	ATPase
441	 43.08	0	430273..430785	+	170	13541272	-	TVN0441	-	hypothetical protein
442	 41.57	0	430782..431825	-	347	13541273	-	TVN0442	-	adenine-specific DNA methylase
443	 43.70	0	432246..432380	+	44	13541274	-	TVN0443	-	peroxiredoxin fragment (inactivated)
444	 37.78	0	432540..432809	+	89	13541275	-	TVN0444	-	peroxiredoxin fragment (inactivated)
445	 42.04	0	433464..434393	-	309	13541276	-	TVN0445	-	ATPase
446	 33.99	-2	434445..434747	-	100	13541277	-	TVN0446	-	hypothetical protein
447	 38.91	0	434910..435626	+	238	13541278	-	TVN0447	-	DNA-binding protein
448	 41.76	0	435696..436799	+	367	13541279	-	TVN0448	-	dehydrogenase
449	 43.17	0	437191..437556	+	121	13541280	rpl7ae	TVN0449	-	50S ribosomal protein L7Ae
450	 50.00	+2	437567..437776	+	69	13541281	rps28e	TVN0450	-	30S ribosomal protein S28e
451	 45.27	+1	437779..437979	+	66	13541282	-	TVN0451	-	50S ribosomal protein L24e
452	 41.22	0	437979..438422	+	147	13541283	-	TVN0452	-	nucleoside diphosphate kinase
453	 44.24	0	438400..440169	+	589	13541284	-	TVN0453	-	translation initiation factor IF-2
454	 41.93	0	440460..441413	-	317	13541285	-	TVN0454	-	UDP-glucose 4-epimerase
455	 41.50	0	441622..442698	+	358	13541286	-	TVN0455	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
456	 40.70	0	442721..443236	-	171	13541287	-	TVN0456	-	regulator of amino acid metabolism
457	 45.99	+1	443339..444310	-	323	13541288	radA	TVN0457	-	DNA repair and recombination protein RadA
458	 42.18	0	444310..445326	-	338	13541289	-	TVN0458	-	glyceraldehyde-3-phosphate dehydrogenase
459	 34.80	-1	445619..449104	+	1161	13541290	-	TVN0459	-	hypothetical protein
460	 41.58	0	449193..449738	+	181	13541291	-	TVN0460	-	hypothetical protein
461	 36.43	-1	449750..450298	+	182	13541292	-	TVN0461	-	aromatic acid decarboxylase
462	 38.61	0	450261..450734	+	157	13541293	-	TVN0462	-	hypothetical protein
463	 39.49	0	450731..451753	+	340	13541294	-	TVN0463	-	RNA-binding protein (pelota-related)
464	 37.47	0	452430..452888	-	152	13541295	-	TVN0464	-	restriction endonuclease S subunit fragment
465	 36.95	-1	452892..453140	-	82	13541296	-	TVN0465	-	restriction endonuclease S subunit fragment
466	 47.46	+1	453177..453806	+	209	13541297	-	TVN0466	-	hypothetical protein
467	 38.65	0	454214..454984	-	256	13541298	-	TVN0467	-	hypothetical protein
468	 42.23	0	455305..456192	-	295	13541299	-	TVN0468	-	hypothetical protein
469	 41.26	0	456214..456579	-	121	13541300	-	TVN0469	-	hypothetical protein
470	 45.87	+1	456921..457223	+	100	13541301	-	TVN0470	-	thioredoxin reductase
471	 28.55	-2	457516..458142	-	208	13541302	-	TVN0471	-	transcription regulator (HTH)
472	 40.99	0	458260..459657	+	465	13541303	-	TVN0472	-	transporter component
473	 38.13	0	459941..461107	+	388	13541304	-	TVN0473	-	NAD(FAD)-dependent dehydrogenase
474	 32.62	-2	461113..461535	+	140	13541305	-	TVN0474	-	hypothetical protein
475	 34.99	-1	461540..462262	-	240	13541306	-	TVN0475	-	hypothetical protein
476	 43.84	0	462512..463720	+	402	13541307	-	TVN0476	-	transporter component
477	 39.06	0	464026..465282	-	418	13541308	-	TVN0477	-	arginine deiminase
478	 38.69	0	465345..466352	-	335	13541309	-	TVN0478	-	NMD protein (ribosome stability and mRNA decay protein)
479	 37.24	-1	466379..466993	-	204	13541310	-	TVN0479	-	hypothetical protein
480	 43.49	0	467069..468151	+	360	13541311	-	TVN0480	-	hypothetical protein
481	 36.96	-1	468197..468499	+	100	13541312	-	TVN0481	-	hypothetical protein
482	 43.45	0	468494..468661	-	55	13541313	-	TVN0482	-	30S ribosomal protein S27ae
483	 40.33	0	468673..468972	-	99	13541314	rps24e	TVN0483	-	30S ribosomal protein S24e
484	 39.72	0	468984..469484	-	166	13541315	-	TVN0484	-	hypothetical protein
485	 40.51	0	469462..469656	-	64	13541316	rpoE	TVN0485	-	DNA-directed RNA polymerase subunit E''
486	 43.18	0	469653..470231	-	192	13541317	-	TVN0486	-	DNA-directed RNA polymerase subunit E'
487	 42.90	0	470348..471445	-	365	13541318	-	TVN0487	-	molecular chaperone (DnaJ-related)
488	 43.51	0	471466..473313	-	615	13541319	dnaK	TVN0488	-	molecular chaperone DnaK
489	 37.10	-1	473313..473843	-	176	13541320	-	TVN0489	-	molecular chaperone GrpE (heat shock protein)
490	 39.25	0	473958..475190	+	410	13541321	-	TVN0490	-	multidrug efflux permease
491	 38.48	0	475215..475661	+	148	13541322	-	TVN0491	-	phospholipid-binding protein
492	 41.74	0	475673..476992	+	439	13541323	-	TVN0492	-	membrane-bound serine protease
493	 37.72	0	477074..477415	+	113	13541324	-	TVN0493	-	hypothetical protein
494	 44.51	+1	477602..479569	+	655	13541325	-	TVN0494	-	ATP-dependent protease Lon
495	 37.32	-1	479924..480700	-	258	13541326	cobS	TVN0495	-	cobalamin synthase
496	 42.10	0	480705..481742	-	345	13541327	-	TVN0496	-	aspartate aminotransferase
497	 41.20	0	483190..483672	-	160	13541328	-	TVN0497	-	hypothetical protein
498	 43.60	0	483803..485350	+	515	13541329	-	TVN0498	-	RNA polymerase II complex ELP3 subunit
499	 40.50	0	485525..487282	+	585	13541330	-	TVN0499	-	potassium-transporting ATPase subunit A
500	 39.96	0	487279..489285	+	668	13541331	-	TVN0500	-	potassium-transporting ATPase subunit B
501	 40.63	0	489279..489908	+	209	13541332	-	TVN0501	-	potassium-transporting ATPase subunit C
502	 40.17	0	489921..490739	-	272	13541333	-	TVN0502	-	nucleotide-binding protein (UspA-related)
503	 41.41	0	491021..491515	+	164	13541334	-	TVN0503	-	hypothetical protein
504	 44.14	0	491501..492490	-	329	13541335	-	TVN0504	-	kinase related to galactokinase and mevalonate kinase
505	 42.81	0	492576..493451	+	291	13541336	-	TVN0505	-	nucleoside-diphosphate sugar epimerase
506	 42.07	0	493454..494392	-	312	13541337	-	TVN0506	-	tRNA-modifying enzyme
40.87	MEAN

3.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.