IslandPath Analysis: Thermoplasma volcanium GSS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.87   STD DEV: 3.44
Thermoplasma volcanium GSS1, complete genome - 1..1584804
1499 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
346	 41.16	0	342686..343183	+	165	13541177	rpl30p	TVN0346	-	50S ribosomal protein L30P
347	 41.78	0	343164..343601	+	145	13541178	rpl15p	TVN0347	-	50S ribosomal protein L15P
348	 42.08	0	343579..345339	+	586	13541179	-	TVN0348	-	preprotein translocase SecY
349	 46.15	+1	345340..345885	+	181	13541180	-	TVN0349	-	adenylate kinase
350	 41.00	0	345882..346559	+	225	13541181	-	TVN0350	-	hypothetical protein
351	 39.09	0	346556..347128	+	190	13541182	-	TVN0351	-	cytidylate kinase
352	 43.03	0	347179..348240	+	353	13541183	-	TVN0352	-	H/ACA RNA-protein complex component Cbf5p
353	 43.48	0	348263..348814	+	183	13541184	-	TVN0353	-	Nop56p-related protein (ribosomal biogenesis)
354	 44.42	+1	348801..350225	-	474	13541185	-	TVN0354	-	amidophosphoribosyltransferase
355	 46.06	+1	350173..350337	-	54	13541186	rpl37e	TVN0355	-	50S ribosomal protein L37e
356	 39.68	0	350334..350585	-	83	13541187	-	TVN0356	-	small nuclear ribonucleoprotein
357	 43.05	0	350720..351553	+	277	13541188	-	TVN0357	-	nucleoside-diphosphate-sugar epimerase
358	 38.25	0	351555..352022	-	155	13541189	-	TVN0358	-	hypothetical protein
359	 39.00	0	352110..353009	+	299	13541190	-	TVN0359	-	translation elongation factor (GTPase)
360	 44.54	+1	353081..353785	+	234	13541191	-	TVN0360	-	hypothetical protein
361	 39.57	0	354006..355256	+	416	13541192	-	TVN0361	-	hypothetical protein
362	 40.31	0	355283..357232	+	649	13541193	-	TVN0362	-	polyferredoxin
363	 42.67	0	357199..357873	-	224	13541194	-	TVN0363	-	enoyl-CoA hydratase
364	 38.89	0	357925..358554	+	209	13541195	-	TVN0364	-	DNA-binding protein
365	 37.57	0	358547..359065	-	172	13541196	-	TVN0365	-	hypothetical protein
366	 46.78	+1	359295..360023	+	242	13541197	-	TVN0366	-	Rieske Fe-S protein
367	 43.25	0	360034..361647	+	537	13541198	-	TVN0367	-	cytochrome b subunit of the bc complex
368	 44.44	+1	361650..362531	-	293	13541199	-	TVN0368	-	carboxyphosphonoenolpyruvate phosphonomutase
369	 41.22	0	362515..363846	-	443	13541200	-	TVN0369	-	hypothetical protein
370	 41.27	0	363970..364788	-	272	13541201	-	TVN0370	-	Sec-independent protein secretion pathway component (TatC-related)
371	 39.60	0	364778..365080	-	100	13541202	-	TVN0371	-	Sec-independent protein secretion pathway component
372	 42.50	0	365507..366346	+	279	13541203	-	TVN0372	-	Rieske Fe-S protein
373	 41.41	0	366349..367524	+	391	13541204	-	TVN0373	-	cytochrome b subunit of the bc complex
374	 40.10	0	367521..367712	+	63	13541205	-	TVN0374	-	hypothetical protein
375	 36.96	-1	367751..368053	+	100	13541206	-	TVN0375	-	hypothetical protein
376	 37.78	0	368053..368277	+	74	13541207	-	TVN0376	-	hypothetical protein
377	 34.66	-1	368274..368801	-	175	13541208	-	TVN0377	-	transcription regulator
378	 37.43	-1	368934..369104	-	56	13541209	-	TVN0378	-	transcription regulator (HTH)
379	 40.65	0	369160..371058	-	632	13541210	-	TVN0379	-	ATPase
380	 38.33	0	371051..371671	-	206	13541211	-	TVN0380	-	hypothetical protein
381	 41.24	0	371934..372401	+	155	13541212	-	TVN0381	-	hypothetical protein
382	 39.18	0	372394..373521	+	375	13541213	-	TVN0382	-	ATPase of the AAA+ class involved in cell division
383	 40.69	0	373629..374267	+	212	13541214	-	TVN0383	-	coiled-coil domain-containing protein
384	 42.07	0	374366..374674	-	102	13541215	-	TVN0384	-	hypothetical protein
385	 40.83	0	374780..375766	+	328	13541216	-	TVN0385	-	homoserine dehydrogenase
386	 43.30	0	375941..376753	+	270	13541217	-	TVN0386	-	ABC-type nitrate transporter, ATPase component
387	 40.90	0	376750..378375	+	541	13541218	-	TVN0387	-	ABC-type nitrate transport permease
388	 46.32	+1	378387..378848	-	153	13541219	-	TVN0388	-	hypothetical protein
389	 37.76	0	378908..379201	-	97	13541220	-	TVN0389	-	hypothetical protein
390	 40.37	0	379541..380506	+	321	13541221	-	TVN0390	-	dehydrogenase
391	 34.78	-1	380519..380863	+	114	13541222	-	TVN0391	-	hypothetical protein
392	 39.07	0	380902..381372	-	156	13541223	-	TVN0392	-	hypothetical protein
393	 38.32	0	382012..383193	+	393	13541224	-	TVN0393	-	Kef-type K+ transport system, membrane component
394	 42.50	0	383770..384816	-	348	13541225	-	TVN0394	-	major facilitator superfamily permease
395	 42.22	0	385512..385916	+	134	13541226	-	TVN0395	-	sterol carrier protein
396	 40.91	0	385927..387048	+	373	13541227	-	TVN0396	-	alcohol dehydrogenase IV
397	 43.49	0	387045..388541	+	498	13541228	-	TVN0397	-	NAD-dependent aldehyde dehydrogenase
398	 42.55	0	388568..389749	-	393	13541229	-	TVN0398	-	2-amino-3-ketobutyrate coenzyme A ligase
399	 41.17	0	389981..390580	+	199	13541230	rps2P	TVN0399	-	30S ribosomal protein S2
400	 40.16	0	390826..391704	-	292	13541231	-	TVN0400	-	tRNA splicing endonuclease
401	 38.95	0	391697..392212	-	171	13541232	-	TVN0401	-	GTPase
402	 39.95	0	392327..393535	+	402	13541233	-	TVN0402	-	transcription regulator
403	 38.80	0	393600..394586	+	328	13541234	-	TVN0403	-	fused phosphopantetheine adenylyltransferase/unknown domain-containing protein
404	 39.39	0	394567..395457	-	296	13541235	-	TVN0404	-	Ca2+/Na+ antiporter
405	 44.27	0	395474..395866	-	130	13541236	-	TVN0405	-	S-adenosylmethionine decarboxylase proenzyme
406	 40.58	0	396051..396809	-	252	13541237	-	TVN0406	-	transcription regulator
407	 39.14	0	396861..397721	-	286	13541238	ubiA	TVN0407	-	prenyltransferase
408	 43.22	0	397730..399175	-	481	13541239	-	TVN0408	-	4-hydroxybenzoate decarboxylase
409	 42.12	0	399197..400561	-	454	13541240	-	TVN0409	-	cobyrinic acid a,c-diamide synthase
410	 40.34	0	400558..401313	-	251	13541241	-	TVN0410	-	hypothetical protein
411	 39.68	0	401285..401473	-	62	13541242	-	TVN0411	-	H/ACA RNA-protein complex component Nop10p
412	 42.48	0	401470..402234	-	254	13541243	-	TVN0412	-	translation initiation factor IF-2 subunit alpha
413	 42.93	0	402231..402428	-	65	13541244	rps27e	TVN0413	-	30S ribosomal protein S27e
414	 44.68	+1	402431..402712	-	93	13541245	rpl44e	TVN0414	-	50S ribosomal protein L44e
415	 40.62	0	403403..403690	-	95	13541246	-	TVN0415	-	hypothetical protein
416	 38.52	0	404043..404408	+	121	13541247	-	TVN0416	-	hypothetical protein
417	 42.70	0	404401..405222	-	273	13541248	-	TVN0417	-	spermidine synthase
418	 42.66	0	405413..406345	+	310	13541249	-	TVN0418	-	putative deoxyhypusine synthase
419	 41.61	0	406476..406934	+	152	13541250	-	TVN0419	-	peroxiredoxin
420	 47.94	+2	407122..407436	-	104	13541251	rpl12p	TVN0420	-	50S ribosomal protein L12P
421	 42.86	0	407450..408394	-	314	13541252	rplP0	TVN0421	-	acidic ribosomal protein P0
422	 43.73	0	408391..409044	-	217	13541253	rpl1P	TVN0422	-	50S ribosomal protein L1P
423	 45.70	+1	409059..409535	-	158	13541254	rpl11p	TVN0423	-	50S ribosomal protein L11P
424	 44.74	+1	409698..410258	+	186	13541255	-	TVN0424	-	intracellular protease
425	 39.08	0	410584..411609	+	341	13541256	-	TVN0425	-	hypothetical protein
426	 39.19	0	411662..412771	-	369	13541257	-	TVN0426	-	mevalonate pyrophosphate decarboxylase
427	 42.81	0	414098..414403	+	101	13541258	-	TVN0427	-	hypothetical protein
428	 42.54	0	415361..417271	-	636	13541259	-	TVN0428	-	hypothetical protein
429	 40.64	0	417372..419177	+	601	13541260	-	TVN0429	-	glycogen debranching protein
430	 42.34	0	419174..420283	+	369	13541261	-	TVN0430	-	glycosyltransferase
431	 41.07	0	420280..421416	+	378	13541262	-	TVN0431	-	Alpha-amylase
432	 46.06	+1	421440..422264	+	274	13541263	-	TVN0432	-	asparaginase
433	 45.36	+1	422270..422635	+	121	13541264	-	TVN0433	-	hypothetical protein
434	 38.14	0	422661..423014	-	117	13541265	-	TVN0434	-	hypothetical protein
435	 39.37	0	423096..424040	-	314	13541266	-	TVN0435	-	nucleoside-diphosphate-sugar pyrophosphorylase
436	 44.54	+1	424218..425555	+	445	13541267	-	TVN0436	-	major facilitator superfamily permease
437	 45.10	+1	425663..426886	-	407	13541268	-	TVN0437	-	RNA processing exonuclease
438	 42.25	0	426892..427665	-	257	13541269	-	TVN0438	-	5'-methylthioadenosine phosphorylase II
439	 40.08	0	427721..428431	-	236	13541270	-	TVN0439	-	asparagine synthase
440	 43.71	0	428481..430262	+	593	13541271	-	TVN0440	-	ATPase
441	 43.08	0	430273..430785	+	170	13541272	-	TVN0441	-	hypothetical protein
442	 41.57	0	430782..431825	-	347	13541273	-	TVN0442	-	adenine-specific DNA methylase
443	 43.70	0	432246..432380	+	44	13541274	-	TVN0443	-	peroxiredoxin fragment (inactivated)
444	 37.78	0	432540..432809	+	89	13541275	-	TVN0444	-	peroxiredoxin fragment (inactivated)
445	 42.04	0	433464..434393	-	309	13541276	-	TVN0445	-	ATPase
40.87	MEAN

3.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.