IslandPath Analysis: Thermoplasma volcanium GSS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.87   STD DEV: 3.44
Thermoplasma volcanium GSS1, complete genome - 1..1584804
1499 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
311	 39.85	0	321120..322286	+	388	13541142	-	TVN0311	-	pseudouridylate synthase
312	 44.44	+1	322289..322585	+	98	13541143	-	TVN0312	-	50S ribosomal protein L21e
313	 35.58	-1	322589..322900	+	103	13541144	-	TVN0313	-	hypothetical protein
314	 41.17	0	322914..323462	+	182	13541145	-	TVN0314	-	RNA-binding protein
315	 38.80	0	323459..324172	+	237	13541146	-	TVN0315	-	rRNA dimethyladenosine transferase
316	 42.55	0	324117..324941	-	274	13541147	-	TVN0316	-	membrane protease subunit
317	 35.06	-1	326039..326443	+	134	13541148	-	TVN0317	-	transcription regulator
318	 35.42	-1	326520..326903	+	127	13541149	-	TVN0318	-	hypothetical protein
319	 42.26	0	326994..327161	+	55	13541150	-	TVN0319	-	preprotein translocase subunit SecG
320	 40.08	0	327166..328128	-	320	13541151	-	TVN0320	-	mevalonate pyrophosphate decarboxylase
321	 37.48	0	328339..329157	+	272	13541152	-	TVN0321	-	hypothetical protein
322	 38.50	0	329566..331095	+	509	13541153	-	TVN0322	-	membrane-associated Zn-dependent protease 1
323	 44.12	0	331403..331810	+	135	13541154	-	TVN0323	-	hypothetical protein
324	 42.77	0	332231..333226	+	331	13541155	rpl3p	TVN0324	-	50S ribosomal protein L3P
325	 43.10	0	333223..333990	+	255	13541156	rpl4lp	TVN0325	-	50S ribosomal protein L4P
326	 39.68	0	333990..334241	+	83	13541157	rplW	TVN0326	-	50S ribosomal protein L23
327	 45.96	+1	334250..334954	+	234	13541158	rpl2p	TVN0327	-	50S ribosomal protein L2P
328	 41.01	0	334941..335396	+	151	13541159	rps19p	TVN0328	-	30S ribosomal protein S19P
329	 42.54	0	335393..335848	+	151	13541160	rpl22p	TVN0329	-	50S ribosomal protein L22P
330	 41.74	0	335845..336522	+	225	13541161	rps3p	TVN0330	-	30S ribosomal protein S3P
331	 45.27	+1	336449..336649	+	66	13541162	rpmC	TVN0331	-	50S ribosomal protein L29
332	 41.58	0	336650..336952	+	100	13541163	-	TVN0332	-	translation initiation factor Sui1
333	 39.26	0	336949..337218	+	89	13541164	-	TVN0333	-	ribonuclease P protein component 1
334	 44.55	+1	337220..337549	+	109	13541165	rps17p	TVN0334	-	30S ribosomal protein S17P
335	 46.62	+1	337546..337944	+	132	13541166	rpl14p	TVN0335	-	50S ribosomal protein L14P
336	 39.27	0	337953..338390	+	145	13541167	rpl24p	TVN0336	-	50S ribosomal protein L24P
337	 43.08	0	338380..339087	+	235	13541168	-	TVN0337	-	30S ribosomal protein S4e
338	 40.94	0	339084..339596	+	170	13541169	rpl5p	TVN0338	-	50S ribosomal protein L5P
339	 44.44	+1	339601..339762	+	53	13541170	rps14P	TVN0339	-	30S ribosomal protein S14P
340	 37.69	0	339772..340161	+	129	13541171	rps8p	TVN0340	-	30S ribosomal protein S8P
341	 40.41	0	340175..340711	+	178	13541172	rpl6p	TVN0341	-	50S ribosomal protein L6P
342	 42.12	0	340713..341099	+	128	13541173	rpl32e	TVN0342	-	50S ribosomal protein L32e
343	 41.33	0	341109..341558	+	149	13541174	rpl19e	TVN0343	-	50S ribosomal protein L19e
344	 41.82	0	341564..342046	+	160	13541175	rpl18p	TVN0344	-	50S ribosomal protein L18P
345	 44.14	0	342043..342708	+	221	13541176	rps5p	TVN0345	-	30S ribosomal protein S5P
346	 41.16	0	342686..343183	+	165	13541177	rpl30p	TVN0346	-	50S ribosomal protein L30P
347	 41.78	0	343164..343601	+	145	13541178	rpl15p	TVN0347	-	50S ribosomal protein L15P
348	 42.08	0	343579..345339	+	586	13541179	-	TVN0348	-	preprotein translocase SecY
349	 46.15	+1	345340..345885	+	181	13541180	-	TVN0349	-	adenylate kinase
350	 41.00	0	345882..346559	+	225	13541181	-	TVN0350	-	hypothetical protein
351	 39.09	0	346556..347128	+	190	13541182	-	TVN0351	-	cytidylate kinase
352	 43.03	0	347179..348240	+	353	13541183	-	TVN0352	-	H/ACA RNA-protein complex component Cbf5p
353	 43.48	0	348263..348814	+	183	13541184	-	TVN0353	-	Nop56p-related protein (ribosomal biogenesis)
354	 44.42	+1	348801..350225	-	474	13541185	-	TVN0354	-	amidophosphoribosyltransferase
355	 46.06	+1	350173..350337	-	54	13541186	rpl37e	TVN0355	-	50S ribosomal protein L37e
356	 39.68	0	350334..350585	-	83	13541187	-	TVN0356	-	small nuclear ribonucleoprotein
357	 43.05	0	350720..351553	+	277	13541188	-	TVN0357	-	nucleoside-diphosphate-sugar epimerase
358	 38.25	0	351555..352022	-	155	13541189	-	TVN0358	-	hypothetical protein
359	 39.00	0	352110..353009	+	299	13541190	-	TVN0359	-	translation elongation factor (GTPase)
360	 44.54	+1	353081..353785	+	234	13541191	-	TVN0360	-	hypothetical protein
361	 39.57	0	354006..355256	+	416	13541192	-	TVN0361	-	hypothetical protein
362	 40.31	0	355283..357232	+	649	13541193	-	TVN0362	-	polyferredoxin
363	 42.67	0	357199..357873	-	224	13541194	-	TVN0363	-	enoyl-CoA hydratase
364	 38.89	0	357925..358554	+	209	13541195	-	TVN0364	-	DNA-binding protein
365	 37.57	0	358547..359065	-	172	13541196	-	TVN0365	-	hypothetical protein
366	 46.78	+1	359295..360023	+	242	13541197	-	TVN0366	-	Rieske Fe-S protein
367	 43.25	0	360034..361647	+	537	13541198	-	TVN0367	-	cytochrome b subunit of the bc complex
368	 44.44	+1	361650..362531	-	293	13541199	-	TVN0368	-	carboxyphosphonoenolpyruvate phosphonomutase
369	 41.22	0	362515..363846	-	443	13541200	-	TVN0369	-	hypothetical protein
370	 41.27	0	363970..364788	-	272	13541201	-	TVN0370	-	Sec-independent protein secretion pathway component (TatC-related)
371	 39.60	0	364778..365080	-	100	13541202	-	TVN0371	-	Sec-independent protein secretion pathway component
372	 42.50	0	365507..366346	+	279	13541203	-	TVN0372	-	Rieske Fe-S protein
373	 41.41	0	366349..367524	+	391	13541204	-	TVN0373	-	cytochrome b subunit of the bc complex
374	 40.10	0	367521..367712	+	63	13541205	-	TVN0374	-	hypothetical protein
375	 36.96	-1	367751..368053	+	100	13541206	-	TVN0375	-	hypothetical protein
376	 37.78	0	368053..368277	+	74	13541207	-	TVN0376	-	hypothetical protein
377	 34.66	-1	368274..368801	-	175	13541208	-	TVN0377	-	transcription regulator
378	 37.43	-1	368934..369104	-	56	13541209	-	TVN0378	-	transcription regulator (HTH)
379	 40.65	0	369160..371058	-	632	13541210	-	TVN0379	-	ATPase
380	 38.33	0	371051..371671	-	206	13541211	-	TVN0380	-	hypothetical protein
381	 41.24	0	371934..372401	+	155	13541212	-	TVN0381	-	hypothetical protein
382	 39.18	0	372394..373521	+	375	13541213	-	TVN0382	-	ATPase of the AAA+ class involved in cell division
383	 40.69	0	373629..374267	+	212	13541214	-	TVN0383	-	coiled-coil domain-containing protein
384	 42.07	0	374366..374674	-	102	13541215	-	TVN0384	-	hypothetical protein
385	 40.83	0	374780..375766	+	328	13541216	-	TVN0385	-	homoserine dehydrogenase
386	 43.30	0	375941..376753	+	270	13541217	-	TVN0386	-	ABC-type nitrate transporter, ATPase component
387	 40.90	0	376750..378375	+	541	13541218	-	TVN0387	-	ABC-type nitrate transport permease
388	 46.32	+1	378387..378848	-	153	13541219	-	TVN0388	-	hypothetical protein
389	 37.76	0	378908..379201	-	97	13541220	-	TVN0389	-	hypothetical protein
390	 40.37	0	379541..380506	+	321	13541221	-	TVN0390	-	dehydrogenase
391	 34.78	-1	380519..380863	+	114	13541222	-	TVN0391	-	hypothetical protein
392	 39.07	0	380902..381372	-	156	13541223	-	TVN0392	-	hypothetical protein
393	 38.32	0	382012..383193	+	393	13541224	-	TVN0393	-	Kef-type K+ transport system, membrane component
394	 42.50	0	383770..384816	-	348	13541225	-	TVN0394	-	major facilitator superfamily permease
395	 42.22	0	385512..385916	+	134	13541226	-	TVN0395	-	sterol carrier protein
396	 40.91	0	385927..387048	+	373	13541227	-	TVN0396	-	alcohol dehydrogenase IV
397	 43.49	0	387045..388541	+	498	13541228	-	TVN0397	-	NAD-dependent aldehyde dehydrogenase
398	 42.55	0	388568..389749	-	393	13541229	-	TVN0398	-	2-amino-3-ketobutyrate coenzyme A ligase
399	 41.17	0	389981..390580	+	199	13541230	rps2P	TVN0399	-	30S ribosomal protein S2
400	 40.16	0	390826..391704	-	292	13541231	-	TVN0400	-	tRNA splicing endonuclease
401	 38.95	0	391697..392212	-	171	13541232	-	TVN0401	-	GTPase
402	 39.95	0	392327..393535	+	402	13541233	-	TVN0402	-	transcription regulator
403	 38.80	0	393600..394586	+	328	13541234	-	TVN0403	-	fused phosphopantetheine adenylyltransferase/unknown domain-containing protein
404	 39.39	0	394567..395457	-	296	13541235	-	TVN0404	-	Ca2+/Na+ antiporter
405	 44.27	0	395474..395866	-	130	13541236	-	TVN0405	-	S-adenosylmethionine decarboxylase proenzyme
406	 40.58	0	396051..396809	-	252	13541237	-	TVN0406	-	transcription regulator
407	 39.14	0	396861..397721	-	286	13541238	ubiA	TVN0407	-	prenyltransferase
408	 43.22	0	397730..399175	-	481	13541239	-	TVN0408	-	4-hydroxybenzoate decarboxylase
409	 42.12	0	399197..400561	-	454	13541240	-	TVN0409	-	cobyrinic acid a,c-diamide synthase
410	 40.34	0	400558..401313	-	251	13541241	-	TVN0410	-	hypothetical protein
40.87	MEAN

3.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.