IslandPath Analysis: Thermoplasma volcanium GSS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.87   STD DEV: 3.44
Thermoplasma volcanium GSS1, complete genome - 1..1584804
1499 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
262	 42.07	0	275700..276764	+	354	13541093	-	TVN0262	-	geranylgeranyl pyrophosphate synthase
263	 44.13	0	276761..277612	-	283	13541094	-	TVN0263	-	integrase/recombinase
264	 39.31	0	277703..278338	+	211	13541095	-	TVN0264	-	ribulose-phosphate 3-epimerase
265	 43.97	0	278316..279302	-	328	13541096	-	TVN0265	-	alcohol dehydrogenase
266	 39.48	0	279375..279911	-	178	13541097	-	TVN0266	-	hypothetical protein
267	 44.00	0	280069..280218	+	49	13541098	rpl40e	TVN0267	-	50S ribosomal protein L40e
268	 43.11	0	280223..280999	+	258	13541099	-	TVN0268	-	phosphoribosylformylglycinamidine synthase subunit I
269	 44.71	+1	280992..282239	+	415	13541100	-	TVN0269	-	dihydroorotase
270	 41.25	0	282227..282820	-	197	13541101	-	TVN0270	-	RNA methylase
271	 44.12	0	282820..283125	-	101	13541102	-	TVN0271	-	hypothetical protein
272	 43.83	0	283269..284192	-	307	13541103	-	TVN0272	-	ornithine carbamoyltransferase
273	 45.80	+1	284189..285046	-	285	13541104	-	TVN0273	-	succinyl-CoA synthetase subunit alpha
274	 44.54	+1	285047..286144	-	365	13541105	sucC	TVN0274	-	succinyl-CoA synthetase subunit beta
275	 30.63	-2	288250..289470	-	406	13541106	-	TVN0275	-	hypothetical protein
276	 41.85	0	291894..292433	-	179	13541107	-	TVN0276	-	hypothetical protein
277	 39.00	0	292522..293121	-	199	13541108	-	TVN0277	-	hypothetical protein
278	 46.05	+1	293611..293838	+	75	13541109	-	TVN0278	-	hypothetical protein
279	 37.36	-1	293828..294100	-	90	13541110	-	TVN0279	-	RNAse P protein subunit RPR2
280	 38.81	0	294141..294815	+	224	13541111	-	TVN0280	-	phosphoglycolate phosphatase
281	 43.26	0	294833..295648	-	271	13541112	-	TVN0281	-	solute-binding protein
282	 37.29	-1	295743..296525	+	260	13541113	-	TVN0282	-	hypothetical protein
283	 41.69	0	296872..297936	-	354	13541114	-	TVN0283	-	ABC-type Fe3+-siderophores transporter, permease component
284	 42.34	0	298043..299008	+	321	13541115	-	TVN0284	-	ABC-type Fe3+-siderophores transporter, solute-binding component
285	 41.28	0	299333..300628	-	431	13541116	-	TVN0285	-	arsenite transport permease
286	 44.09	0	300659..301132	-	157	13541117	-	TVN0286	-	peroxiredoxin
287	 39.51	0	301512..302822	-	436	13541118	-	TVN0287	-	adenylosuccinate synthetase
288	 42.01	0	302996..303364	+	122	13541119	-	TVN0288	-	glycine cleavage system protein H
289	 40.40	0	303361..303954	+	197	13541120	-	TVN0289	-	methyltransferase involved in cell division
290	 37.32	-1	303941..304567	-	208	13541121	-	TVN0290	-	hypothetical protein
291	 40.47	0	304564..305502	-	312	13541122	-	TVN0291	-	hypothetical protein
292	 39.37	0	305692..306138	+	148	13541123	-	TVN0292	-	Fe2+ uptake regulation protein
293	 41.26	0	306280..307212	-	310	13541124	-	TVN0293	-	GMP synthase subunit B
294	 44.03	0	307259..307576	-	105	13541125	-	TVN0294	-	hypothetical protein
295	 39.74	0	307586..307819	-	77	13541126	-	TVN0295	-	transcription regulator
296	 40.48	0	307952..308581	+	209	13541127	-	TVN0296	-	organic radical activating protein
297	 40.08	0	308639..309943	+	434	13541128	-	TVN0297	-	glycine dehydrogenase subunit 1
298	 41.79	0	309940..311358	+	472	13541129	-	TVN0298	-	glycine dehydrogenase subunit 2
299	 40.75	0	311426..312436	+	336	13541130	-	TVN0299	-	heme d1 biosynthesis protein (NirJ-related)
300	 37.67	0	312896..313402	+	168	13541131	-	TVN0300	-	hypothetical protein
301	 38.15	0	313409..314239	-	276	13541132	-	TVN0301	-	metal-dependent hydrolase
302	 40.33	0	314249..315463	-	404	13541133	-	TVN0302	-	hypothetical protein
303	 41.13	0	315520..316917	-	465	13541134	-	TVN0303	-	phosphate ABC transporter permease
304	 42.17	0	317051..317752	+	233	13541135	-	TVN0304	-	proteasome subunit alpha
305	 41.85	0	317790..318482	+	230	13541136	-	TVN0305	-	putative RNA-associated protein
306	 45.29	+1	318533..319243	+	236	13541137	-	TVN0306	-	exosome complex RNA-binding protein Rrp4
307	 42.70	0	319203..319949	+	248	13541138	-	TVN0307	-	exosome complex exonuclease Rrp41
308	 43.93	0	319952..320734	+	260	13541139	-	TVN0308	-	exosome complex RNA-binding protein Rrp42
309	 46.50	+1	320740..320982	+	80	13541140	rpl37ae	TVN0309	-	50S ribosomal protein L37Ae
310	 39.86	0	320979..321116	+	45	13541141	-	TVN0310	-	DNA-directed RNA polymerase subunit P
311	 39.85	0	321120..322286	+	388	13541142	-	TVN0311	-	pseudouridylate synthase
312	 44.44	+1	322289..322585	+	98	13541143	-	TVN0312	-	50S ribosomal protein L21e
313	 35.58	-1	322589..322900	+	103	13541144	-	TVN0313	-	hypothetical protein
314	 41.17	0	322914..323462	+	182	13541145	-	TVN0314	-	RNA-binding protein
315	 38.80	0	323459..324172	+	237	13541146	-	TVN0315	-	rRNA dimethyladenosine transferase
316	 42.55	0	324117..324941	-	274	13541147	-	TVN0316	-	membrane protease subunit
317	 35.06	-1	326039..326443	+	134	13541148	-	TVN0317	-	transcription regulator
318	 35.42	-1	326520..326903	+	127	13541149	-	TVN0318	-	hypothetical protein
319	 42.26	0	326994..327161	+	55	13541150	-	TVN0319	-	preprotein translocase subunit SecG
320	 40.08	0	327166..328128	-	320	13541151	-	TVN0320	-	mevalonate pyrophosphate decarboxylase
321	 37.48	0	328339..329157	+	272	13541152	-	TVN0321	-	hypothetical protein
322	 38.50	0	329566..331095	+	509	13541153	-	TVN0322	-	membrane-associated Zn-dependent protease 1
323	 44.12	0	331403..331810	+	135	13541154	-	TVN0323	-	hypothetical protein
324	 42.77	0	332231..333226	+	331	13541155	rpl3p	TVN0324	-	50S ribosomal protein L3P
325	 43.10	0	333223..333990	+	255	13541156	rpl4lp	TVN0325	-	50S ribosomal protein L4P
326	 39.68	0	333990..334241	+	83	13541157	rplW	TVN0326	-	50S ribosomal protein L23
327	 45.96	+1	334250..334954	+	234	13541158	rpl2p	TVN0327	-	50S ribosomal protein L2P
328	 41.01	0	334941..335396	+	151	13541159	rps19p	TVN0328	-	30S ribosomal protein S19P
329	 42.54	0	335393..335848	+	151	13541160	rpl22p	TVN0329	-	50S ribosomal protein L22P
330	 41.74	0	335845..336522	+	225	13541161	rps3p	TVN0330	-	30S ribosomal protein S3P
331	 45.27	+1	336449..336649	+	66	13541162	rpmC	TVN0331	-	50S ribosomal protein L29
332	 41.58	0	336650..336952	+	100	13541163	-	TVN0332	-	translation initiation factor Sui1
333	 39.26	0	336949..337218	+	89	13541164	-	TVN0333	-	ribonuclease P protein component 1
334	 44.55	+1	337220..337549	+	109	13541165	rps17p	TVN0334	-	30S ribosomal protein S17P
335	 46.62	+1	337546..337944	+	132	13541166	rpl14p	TVN0335	-	50S ribosomal protein L14P
336	 39.27	0	337953..338390	+	145	13541167	rpl24p	TVN0336	-	50S ribosomal protein L24P
337	 43.08	0	338380..339087	+	235	13541168	-	TVN0337	-	30S ribosomal protein S4e
338	 40.94	0	339084..339596	+	170	13541169	rpl5p	TVN0338	-	50S ribosomal protein L5P
339	 44.44	+1	339601..339762	+	53	13541170	rps14P	TVN0339	-	30S ribosomal protein S14P
340	 37.69	0	339772..340161	+	129	13541171	rps8p	TVN0340	-	30S ribosomal protein S8P
341	 40.41	0	340175..340711	+	178	13541172	rpl6p	TVN0341	-	50S ribosomal protein L6P
342	 42.12	0	340713..341099	+	128	13541173	rpl32e	TVN0342	-	50S ribosomal protein L32e
343	 41.33	0	341109..341558	+	149	13541174	rpl19e	TVN0343	-	50S ribosomal protein L19e
344	 41.82	0	341564..342046	+	160	13541175	rpl18p	TVN0344	-	50S ribosomal protein L18P
345	 44.14	0	342043..342708	+	221	13541176	rps5p	TVN0345	-	30S ribosomal protein S5P
346	 41.16	0	342686..343183	+	165	13541177	rpl30p	TVN0346	-	50S ribosomal protein L30P
347	 41.78	0	343164..343601	+	145	13541178	rpl15p	TVN0347	-	50S ribosomal protein L15P
348	 42.08	0	343579..345339	+	586	13541179	-	TVN0348	-	preprotein translocase SecY
349	 46.15	+1	345340..345885	+	181	13541180	-	TVN0349	-	adenylate kinase
350	 41.00	0	345882..346559	+	225	13541181	-	TVN0350	-	hypothetical protein
351	 39.09	0	346556..347128	+	190	13541182	-	TVN0351	-	cytidylate kinase
352	 43.03	0	347179..348240	+	353	13541183	-	TVN0352	-	H/ACA RNA-protein complex component Cbf5p
353	 43.48	0	348263..348814	+	183	13541184	-	TVN0353	-	Nop56p-related protein (ribosomal biogenesis)
354	 44.42	+1	348801..350225	-	474	13541185	-	TVN0354	-	amidophosphoribosyltransferase
355	 46.06	+1	350173..350337	-	54	13541186	rpl37e	TVN0355	-	50S ribosomal protein L37e
356	 39.68	0	350334..350585	-	83	13541187	-	TVN0356	-	small nuclear ribonucleoprotein
357	 43.05	0	350720..351553	+	277	13541188	-	TVN0357	-	nucleoside-diphosphate-sugar epimerase
358	 38.25	0	351555..352022	-	155	13541189	-	TVN0358	-	hypothetical protein
359	 39.00	0	352110..353009	+	299	13541190	-	TVN0359	-	translation elongation factor (GTPase)
360	 44.54	+1	353081..353785	+	234	13541191	-	TVN0360	-	hypothetical protein
361	 39.57	0	354006..355256	+	416	13541192	-	TVN0361	-	hypothetical protein
40.87	MEAN

3.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.