IslandPathversion 1.0

IslandPath Analysis: Thermoplasma volcanium GSS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.87 STD DEV: 3.44
Thermoplasma volcanium GSS1, complete genome - 1..1584804
1499 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
221	 41.54	0	230102..230905	+	267	13541052	-	TVN0221	-	Signal peptidase I
222	 46.86	+1	230902..231426	-	174	13541053	-	TVN0222	-	peroxiredoxin
223	 41.12	0	231588..232268	+	226	13541054	-	TVN0223	-	cell wall biosynthesis glycosyltransferase
224	 41.96	0	232273..233466	-	397	13541055	-	TVN0224	-	major facilitator superfamily permease
225	 40.00	0	233580..233939	+	119	13541056	-	TVN0225	-	hypothetical protein
226	 41.84	0	233936..235228	-	430	13541057	-	TVN0226	-	major facilitator superfamily permease
227	 38.43	0	235331..238018	-	895	13541058	-	TVN0227	-	chromosome segregation protein
228	 43.72	0	238008..239114	-	368	13541059	-	TVN0228	-	DNA repair exonuclease
229	 42.39	0	239138..240694	-	518	13541060	-	TVN0229	-	ATPase
230	 40.28	0	240654..241661	-	335	13541061	-	TVN0230	-	hypothetical protein
231	 43.06	0	241856..242719	+	287	13541062	-	TVN0231	-	3-hydroxyisobutyrate dehydrogenase
232	 42.88	0	242725..244368	+	547	13541063	-	TVN0232	-	NADH:flavin oxidoreductase
233	 38.56	0	245034..245435	-	133	13541064	-	TVN0233	-	hypothetical protein
234	 42.02	0	245889..246671	-	260	13541065	-	TVN0234	-	Zn-ribbon domain-containing protein
235	 44.83	+1	246963..247223	-	86	13541066	-	TVN0235	-	hypothetical protein
236	 40.34	0	247285..247983	+	232	13541067	-	TVN0236	-	DNA-binding protein
237	 40.54	0	248059..251055	+	998	13541068	-	TVN0237	-	thermopsin
238	 36.86	-1	251088..251597	-	169	13541069	-	TVN0238	-	hypothetical protein
239	 42.38	0	251796..252956	+	386	13541070	-	TVN0239	-	methylcitrate synthase
240	 41.51	0	252968..253285	-	105	13541071	-	TVN0240	-	hypothetical protein
241	 47.80	+2	253583..253969	-	128	13541072	-	TVN0241	-	hypothetical protein
242	 47.78	+2	253982..254161	-	59	13541073	-	TVN0242	-	hypothetical protein
243	 45.99	+1	254542..257496	+	984	13541074	-	TVN0243	-	hypothetical protein
244	 39.00	0	257661..257960	+	99	13541075	-	TVN0244	-	hypothetical protein
245	 42.86	0	257957..258796	+	279	13541076	-	TVN0245	-	hypothetical protein
246	 41.05	0	258863..260158	+	431	13541077	-	TVN0246	-	major facilitator superfamily permease
247	 39.53	0	260458..261216	-	252	13541078	-	TVN0247	-	SAM-dependent methyltransferase
248	 41.12	0	261621..262802	+	393	13541079	-	TVN0248	-	transposase
249	 39.41	0	262873..263349	+	158	13541080	-	TVN0249	-	HIT (histidine triad) family protein
250	 42.26	0	263385..264527	+	380	13541081	-	TVN0250	-	major facilitator superfamily permease
251	 44.00	0	264489..265904	-	471	13541082	-	TVN0251	-	mercuric reductase
252	 45.33	+1	265894..266118	-	74	13541083	-	TVN0252	-	copper chaperone
253	 36.69	-1	266253..266639	+	128	13541084	-	TVN0253	-	hypothetical protein
254	 41.57	0	266641..267720	-	359	13541085	-	TVN0254	-	membrane-associated Zn-dependent protease 1
255	 37.94	0	268261..269367	-	368	13541086	-	TVN0255	-	major facilitator superfamily permease
256	 41.83	0	269460..270671	+	403	13541087	-	TVN0256	-	multidrug efflux permease
257	 42.90	0	270675..271280	-	201	13541088	-	TVN0257	-	phosphoglycerate mutase
258	 41.04	0	271512..272783	-	423	13541089	-	TVN0258	-	hypothetical protein
259	 43.25	0	272984..273901	+	305	13541090	-	TVN0259	-	carbamate kinase
260	 41.90	0	273888..274541	-	217	13541091	-	TVN0260	-	phosphoribosyltransferase
261	 41.82	0	274704..275033	-	109	13541092	-	TVN0261	-	NTP pyrophosphohydrolase
262	 42.07	0	275700..276764	+	354	13541093	-	TVN0262	-	geranylgeranyl pyrophosphate synthase
263	 44.13	0	276761..277612	-	283	13541094	-	TVN0263	-	integrase/recombinase
264	 39.31	0	277703..278338	+	211	13541095	-	TVN0264	-	ribulose-phosphate 3-epimerase
265	 43.97	0	278316..279302	-	328	13541096	-	TVN0265	-	alcohol dehydrogenase
266	 39.48	0	279375..279911	-	178	13541097	-	TVN0266	-	hypothetical protein
267	 44.00	0	280069..280218	+	49	13541098	rpl40e	TVN0267	-	50S ribosomal protein L40e
268	 43.11	0	280223..280999	+	258	13541099	-	TVN0268	-	phosphoribosylformylglycinamidine synthase subunit I
269	 44.71	+1	280992..282239	+	415	13541100	-	TVN0269	-	dihydroorotase
270	 41.25	0	282227..282820	-	197	13541101	-	TVN0270	-	RNA methylase
271	 44.12	0	282820..283125	-	101	13541102	-	TVN0271	-	hypothetical protein
272	 43.83	0	283269..284192	-	307	13541103	-	TVN0272	-	ornithine carbamoyltransferase
273	 45.80	+1	284189..285046	-	285	13541104	-	TVN0273	-	succinyl-CoA synthetase subunit alpha
274	 44.54	+1	285047..286144	-	365	13541105	sucC	TVN0274	-	succinyl-CoA synthetase subunit beta
275	 30.63	-2	288250..289470	-	406	13541106	-	TVN0275	-	hypothetical protein
276	 41.85	0	291894..292433	-	179	13541107	-	TVN0276	-	hypothetical protein
277	 39.00	0	292522..293121	-	199	13541108	-	TVN0277	-	hypothetical protein
278	 46.05	+1	293611..293838	+	75	13541109	-	TVN0278	-	hypothetical protein
279	 37.36	-1	293828..294100	-	90	13541110	-	TVN0279	-	RNAse P protein subunit RPR2
280	 38.81	0	294141..294815	+	224	13541111	-	TVN0280	-	phosphoglycolate phosphatase
281	 43.26	0	294833..295648	-	271	13541112	-	TVN0281	-	solute-binding protein
282	 37.29	-1	295743..296525	+	260	13541113	-	TVN0282	-	hypothetical protein
283	 41.69	0	296872..297936	-	354	13541114	-	TVN0283	-	ABC-type Fe3+-siderophores transporter, permease component
284	 42.34	0	298043..299008	+	321	13541115	-	TVN0284	-	ABC-type Fe3+-siderophores transporter, solute-binding component
285	 41.28	0	299333..300628	-	431	13541116	-	TVN0285	-	arsenite transport permease
286	 44.09	0	300659..301132	-	157	13541117	-	TVN0286	-	peroxiredoxin
287	 39.51	0	301512..302822	-	436	13541118	-	TVN0287	-	adenylosuccinate synthetase
288	 42.01	0	302996..303364	+	122	13541119	-	TVN0288	-	glycine cleavage system protein H
289	 40.40	0	303361..303954	+	197	13541120	-	TVN0289	-	methyltransferase involved in cell division
290	 37.32	-1	303941..304567	-	208	13541121	-	TVN0290	-	hypothetical protein
291	 40.47	0	304564..305502	-	312	13541122	-	TVN0291	-	hypothetical protein
292	 39.37	0	305692..306138	+	148	13541123	-	TVN0292	-	Fe2+ uptake regulation protein
293	 41.26	0	306280..307212	-	310	13541124	-	TVN0293	-	GMP synthase subunit B
294	 44.03	0	307259..307576	-	105	13541125	-	TVN0294	-	hypothetical protein
295	 39.74	0	307586..307819	-	77	13541126	-	TVN0295	-	transcription regulator
296	 40.48	0	307952..308581	+	209	13541127	-	TVN0296	-	organic radical activating protein
297	 40.08	0	308639..309943	+	434	13541128	-	TVN0297	-	glycine dehydrogenase subunit 1
298	 41.79	0	309940..311358	+	472	13541129	-	TVN0298	-	glycine dehydrogenase subunit 2
299	 40.75	0	311426..312436	+	336	13541130	-	TVN0299	-	heme d1 biosynthesis protein (NirJ-related)
300	 37.67	0	312896..313402	+	168	13541131	-	TVN0300	-	hypothetical protein
301	 38.15	0	313409..314239	-	276	13541132	-	TVN0301	-	metal-dependent hydrolase
302	 40.33	0	314249..315463	-	404	13541133	-	TVN0302	-	hypothetical protein
303	 41.13	0	315520..316917	-	465	13541134	-	TVN0303	-	phosphate ABC transporter permease
304	 42.17	0	317051..317752	+	233	13541135	-	TVN0304	-	proteasome subunit alpha
305	 41.85	0	317790..318482	+	230	13541136	-	TVN0305	-	putative RNA-associated protein
306	 45.29	+1	318533..319243	+	236	13541137	-	TVN0306	-	exosome complex RNA-binding protein Rrp4
307	 42.70	0	319203..319949	+	248	13541138	-	TVN0307	-	exosome complex exonuclease Rrp41
308	 43.93	0	319952..320734	+	260	13541139	-	TVN0308	-	exosome complex RNA-binding protein Rrp42
309	 46.50	+1	320740..320982	+	80	13541140	rpl37ae	TVN0309	-	50S ribosomal protein L37Ae
310	 39.86	0	320979..321116	+	45	13541141	-	TVN0310	-	DNA-directed RNA polymerase subunit P
311	 39.85	0	321120..322286	+	388	13541142	-	TVN0311	-	pseudouridylate synthase
312	 44.44	+1	322289..322585	+	98	13541143	-	TVN0312	-	50S ribosomal protein L21e
313	 35.58	-1	322589..322900	+	103	13541144	-	TVN0313	-	hypothetical protein
314	 41.17	0	322914..323462	+	182	13541145	-	TVN0314	-	RNA-binding protein
315	 38.80	0	323459..324172	+	237	13541146	-	TVN0315	-	rRNA dimethyladenosine transferase
316	 42.55	0	324117..324941	-	274	13541147	-	TVN0316	-	membrane protease subunit
317	 35.06	-1	326039..326443	+	134	13541148	-	TVN0317	-	transcription regulator
318	 35.42	-1	326520..326903	+	127	13541149	-	TVN0318	-	hypothetical protein
319	 42.26	0	326994..327161	+	55	13541150	-	TVN0319	-	preprotein translocase subunit SecG
320	 40.08	0	327166..328128	-	320	13541151	-	TVN0320	-	mevalonate pyrophosphate decarboxylase
40.87	MEAN

3.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.