IslandPath Analysis: Thermoplasma volcanium GSS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.87   STD DEV: 3.44
Thermoplasma volcanium GSS1, complete genome - 1..1584804
1499 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
179	 43.58	0	186390..187433	-	347	13541010	-	TVN0179	-	isopentenyl pyrophosphate isomerase
180	 36.33	-1	187430..188164	-	244	13541011	-	TVN0180	-	kinase
181	 39.74	0	188161..188691	-	176	13541012	-	TVN0181	-	acetyltransferase
182	 39.27	0	188777..189568	+	263	13541013	-	TVN0182	-	Zn-dependent hydrolase
183	 39.96	0	189621..190586	-	321	13541014	-	TVN0183	-	phosphate uptake regulator
184	 37.25	-1	190639..191352	-	237	13541015	-	TVN0184	-	hypothetical protein
185	 41.71	0	191467..192051	+	194	13541016	-	TVN0185	-	transcription regulator
186	 41.76	0	192133..192666	+	177	13541017	-	TVN0186	-	hypothetical protein
187	 40.11	0	192660..193013	+	117	13541018	-	TVN0187	-	peptidyl-tRNA hydrolase
188	 33.92	-2	193127..193297	-	56	13541019	-	TVN0188	-	hypothetical protein
189	 43.35	0	193469..196114	+	881	13541020	-	TVN0189	-	aconitate hydratase
190	 43.90	0	196177..197397	+	406	13541021	-	TVN0190	-	threonine dehydratase
191	 39.13	0	197394..197945	+	183	13541022	-	TVN0191	-	RNA methylase
192	 38.38	0	198066..198521	+	151	13541023	-	TVN0192	-	transcription regulator
193	 42.66	0	198518..199096	-	192	13541024	-	TVN0193	-	SAM-dependent methyltransferase
194	 37.37	-1	199215..199907	+	230	13541025	aroD	TVN0194	-	3-dehydroquinate dehydratase
195	 46.72	+1	200001..201218	+	405	13541026	-	TVN0195	-	isocitrate dehydrogenase
196	 45.20	+1	201215..201922	-	235	13541027	-	TVN0196	-	hypothetical protein
197	 42.16	0	201915..202775	-	286	13541028	-	TVN0197	-	ribose-phosphate pyrophosphokinase
198	 43.58	0	202930..203661	+	243	13541029	-	TVN0198	-	enoyl-CoA hydratase
199	 41.08	0	203649..204668	+	339	13541030	-	TVN0199	-	N-acetylglucosamine kinase
200	 43.84	0	204657..206426	-	589	13541031	-	TVN0200	-	phosphoenolpyruvate carboxykinase
201	 41.98	0	206628..207356	-	242	13541032	-	TVN0201	-	metal-dependent hydrolase related to alanyl-tRNA synthetase
202	 40.57	0	207459..208121	+	220	13541033	-	TVN0202	-	glutaredoxin
203	 32.05	-2	208360..208593	+	77	13541034	-	TVN0203	-	hypothetical protein
204	 34.15	-1	208707..209075	+	122	13541035	-	TVN0204	-	hypothetical protein
205	 38.59	0	209230..210789	+	519	13541036	-	TVN0205	-	sugar-binding protein
206	 29.52	-2	210797..211687	+	296	13541037	-	TVN0206	-	ABC-type sugar transporter, permease component
207	 30.48	-2	211689..212495	+	268	13541038	-	TVN0207	-	sugar permease
208	 30.96	-2	212538..213590	+	350	13541039	-	TVN0208	-	ABC-type sugar transporter, ATPase component
209	 28.60	-2	215286..218327	+	1013	13541040	-	TVN0209	-	Alpha-mannosidase
210	 37.54	0	218796..219152	-	118	13541041	-	TVN0210	-	transcription regulator
211	 42.88	0	219258..219791	+	177	13541042	-	TVN0211	-	hypothetical protein
212	 41.20	0	219794..220708	+	304	13541043	-	TVN0212	-	Pirin-related protein
213	 37.68	0	220714..221772	-	352	13541044	-	TVN0213	-	transcription regulator
214	 39.62	0	221806..222171	-	121	13541045	-	TVN0214	-	hypothetical protein
215	 39.93	0	222256..222861	+	201	13541046	-	TVN0215	-	hypothetical protein
216	 34.55	-1	222877..224106	-	409	13541047	-	TVN0216	-	major facilitator superfamily permease
217	 36.03	-1	224208..226058	+	616	13541048	-	TVN0217	-	glycosidase
218	 40.60	0	226399..227999	-	533	13541049	-	TVN0218	-	amino acid transporter
219	 42.54	0	228061..229287	-	408	13541050	-	TVN0219	-	multidrug efflux permease
220	 37.92	0	229397..229963	-	188	13541051	-	TVN0220	-	hypothetical protein
221	 41.54	0	230102..230905	+	267	13541052	-	TVN0221	-	Signal peptidase I
222	 46.86	+1	230902..231426	-	174	13541053	-	TVN0222	-	peroxiredoxin
223	 41.12	0	231588..232268	+	226	13541054	-	TVN0223	-	cell wall biosynthesis glycosyltransferase
224	 41.96	0	232273..233466	-	397	13541055	-	TVN0224	-	major facilitator superfamily permease
225	 40.00	0	233580..233939	+	119	13541056	-	TVN0225	-	hypothetical protein
226	 41.84	0	233936..235228	-	430	13541057	-	TVN0226	-	major facilitator superfamily permease
227	 38.43	0	235331..238018	-	895	13541058	-	TVN0227	-	chromosome segregation protein
228	 43.72	0	238008..239114	-	368	13541059	-	TVN0228	-	DNA repair exonuclease
229	 42.39	0	239138..240694	-	518	13541060	-	TVN0229	-	ATPase
230	 40.28	0	240654..241661	-	335	13541061	-	TVN0230	-	hypothetical protein
231	 43.06	0	241856..242719	+	287	13541062	-	TVN0231	-	3-hydroxyisobutyrate dehydrogenase
232	 42.88	0	242725..244368	+	547	13541063	-	TVN0232	-	NADH:flavin oxidoreductase
233	 38.56	0	245034..245435	-	133	13541064	-	TVN0233	-	hypothetical protein
234	 42.02	0	245889..246671	-	260	13541065	-	TVN0234	-	Zn-ribbon domain-containing protein
235	 44.83	+1	246963..247223	-	86	13541066	-	TVN0235	-	hypothetical protein
236	 40.34	0	247285..247983	+	232	13541067	-	TVN0236	-	DNA-binding protein
237	 40.54	0	248059..251055	+	998	13541068	-	TVN0237	-	thermopsin
238	 36.86	-1	251088..251597	-	169	13541069	-	TVN0238	-	hypothetical protein
239	 42.38	0	251796..252956	+	386	13541070	-	TVN0239	-	methylcitrate synthase
240	 41.51	0	252968..253285	-	105	13541071	-	TVN0240	-	hypothetical protein
241	 47.80	+2	253583..253969	-	128	13541072	-	TVN0241	-	hypothetical protein
242	 47.78	+2	253982..254161	-	59	13541073	-	TVN0242	-	hypothetical protein
243	 45.99	+1	254542..257496	+	984	13541074	-	TVN0243	-	hypothetical protein
244	 39.00	0	257661..257960	+	99	13541075	-	TVN0244	-	hypothetical protein
245	 42.86	0	257957..258796	+	279	13541076	-	TVN0245	-	hypothetical protein
246	 41.05	0	258863..260158	+	431	13541077	-	TVN0246	-	major facilitator superfamily permease
247	 39.53	0	260458..261216	-	252	13541078	-	TVN0247	-	SAM-dependent methyltransferase
248	 41.12	0	261621..262802	+	393	13541079	-	TVN0248	-	transposase
249	 39.41	0	262873..263349	+	158	13541080	-	TVN0249	-	HIT (histidine triad) family protein
250	 42.26	0	263385..264527	+	380	13541081	-	TVN0250	-	major facilitator superfamily permease
251	 44.00	0	264489..265904	-	471	13541082	-	TVN0251	-	mercuric reductase
252	 45.33	+1	265894..266118	-	74	13541083	-	TVN0252	-	copper chaperone
253	 36.69	-1	266253..266639	+	128	13541084	-	TVN0253	-	hypothetical protein
254	 41.57	0	266641..267720	-	359	13541085	-	TVN0254	-	membrane-associated Zn-dependent protease 1
255	 37.94	0	268261..269367	-	368	13541086	-	TVN0255	-	major facilitator superfamily permease
256	 41.83	0	269460..270671	+	403	13541087	-	TVN0256	-	multidrug efflux permease
257	 42.90	0	270675..271280	-	201	13541088	-	TVN0257	-	phosphoglycerate mutase
258	 41.04	0	271512..272783	-	423	13541089	-	TVN0258	-	hypothetical protein
259	 43.25	0	272984..273901	+	305	13541090	-	TVN0259	-	carbamate kinase
260	 41.90	0	273888..274541	-	217	13541091	-	TVN0260	-	phosphoribosyltransferase
261	 41.82	0	274704..275033	-	109	13541092	-	TVN0261	-	NTP pyrophosphohydrolase
262	 42.07	0	275700..276764	+	354	13541093	-	TVN0262	-	geranylgeranyl pyrophosphate synthase
263	 44.13	0	276761..277612	-	283	13541094	-	TVN0263	-	integrase/recombinase
264	 39.31	0	277703..278338	+	211	13541095	-	TVN0264	-	ribulose-phosphate 3-epimerase
265	 43.97	0	278316..279302	-	328	13541096	-	TVN0265	-	alcohol dehydrogenase
266	 39.48	0	279375..279911	-	178	13541097	-	TVN0266	-	hypothetical protein
267	 44.00	0	280069..280218	+	49	13541098	rpl40e	TVN0267	-	50S ribosomal protein L40e
268	 43.11	0	280223..280999	+	258	13541099	-	TVN0268	-	phosphoribosylformylglycinamidine synthase subunit I
269	 44.71	+1	280992..282239	+	415	13541100	-	TVN0269	-	dihydroorotase
270	 41.25	0	282227..282820	-	197	13541101	-	TVN0270	-	RNA methylase
271	 44.12	0	282820..283125	-	101	13541102	-	TVN0271	-	hypothetical protein
272	 43.83	0	283269..284192	-	307	13541103	-	TVN0272	-	ornithine carbamoyltransferase
273	 45.80	+1	284189..285046	-	285	13541104	-	TVN0273	-	succinyl-CoA synthetase subunit alpha
274	 44.54	+1	285047..286144	-	365	13541105	sucC	TVN0274	-	succinyl-CoA synthetase subunit beta
275	 30.63	-2	288250..289470	-	406	13541106	-	TVN0275	-	hypothetical protein
276	 41.85	0	291894..292433	-	179	13541107	-	TVN0276	-	hypothetical protein
277	 39.00	0	292522..293121	-	199	13541108	-	TVN0277	-	hypothetical protein
278	 46.05	+1	293611..293838	+	75	13541109	-	TVN0278	-	hypothetical protein
40.87	MEAN

3.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.