IslandPath Analysis: Thermoplasma volcanium GSS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.87   STD DEV: 3.44
Thermoplasma volcanium GSS1, complete genome - 1..1584804
1499 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
133	 40.91	0	142583..143242	-	219	13540964	rnhB	TVN0133	-	ribonuclease HII
134	 39.17	0	143455..143985	+	176	13540965	-	TVN0134	-	hypothetical protein
135	 38.62	0	143986..144477	+	163	13540966	-	TVN0135	-	hypothetical protein
136	 43.11	0	144724..144948	+	74	13540967	-	TVN0136	-	integrase/recombinase
137	 45.72	+1	145021..145569	+	182	13540968	-	TVN0137	-	integrase/recombinase
138	 47.73	+1	145846..147033	-	395	13540969	-	TVN0138	-	multidrug efflux permease
139	 44.74	+1	147168..147614	-	148	13540970	-	TVN0139	-	hypothetical protein
140	 39.05	0	147946..148155	-	69	13540971	-	TVN0140	-	transposon-encoded protein
141	 45.61	+1	148313..148825	+	170	13540972	-	TVN0141	-	hypothetical protein
142	 47.46	+1	148943..149119	+	58	13540973	-	TVN0142	-	hypothetical protein
143	 35.35	-1	149208..149603	+	131	13540974	-	TVN0143	-	hypothetical protein
144	 32.70	-2	149832..150464	+	210	13540975	-	TVN0144	-	hypothetical protein
145	 34.29	-1	151549..152070	+	173	13540976	-	TVN0145	-	hypothetical protein
146	 41.41	0	152244..153692	-	482	13540977	-	TVN0146	-	Na+/proline symporter permease
147	 37.95	0	153694..153888	-	64	13540978	-	TVN0147	-	hypothetical protein
148	 45.11	+1	154235..158269	-	1344	13540979	-	TVN0148	-	multitransmembrane protein
149	 45.00	+1	158468..159187	+	239	13540980	-	TVN0149	-	ABC-type multidrug transport system, ATPase component
150	 38.87	0	159177..160586	+	469	13540981	-	TVN0150	-	hypothetical protein
151	 39.26	0	160657..161955	+	432	13540982	-	TVN0151	-	amino acid transporter
152	 44.35	+1	161955..162980	+	341	13540983	-	TVN0152	-	hypothetical protein
153	 41.35	0	162982..164004	-	340	13540984	-	TVN0153	-	dihydropteroate synthase
154	 43.33	0	164058..165338	-	426	13540985	hisS	TVN0154	-	histidyl-tRNA synthetase
155	 44.96	+1	165728..167215	-	495	13540986	-	TVN0155	-	ATP-dependent protease
156	 41.61	0	167197..168489	-	430	13540987	-	TVN0156	-	DNA primase
157	 41.72	0	168808..169833	+	341	13540988	-	TVN0157	-	endonuclease IV
158	 39.52	0	169835..170125	+	96	13540989	-	TVN0158	-	hypothetical protein
159	 39.12	0	170162..170662	-	166	13540990	-	TVN0159	-	hypothetical protein
160	 44.69	+1	170994..171266	+	90	13540991	-	TVN0160	-	nucleoid DNA-binding protein (HB-related)
161	 43.26	0	171420..172799	+	459	13540992	-	TVN0161	-	hypothetical protein
162	 40.64	0	172869..173429	-	186	13540993	-	TVN0162	-	30S ribosomal protein S7P
163	 42.42	0	173432..173860	-	142	13540994	rps12P	TVN0163	-	30S ribosomal protein S12P
164	 39.13	0	174519..175535	+	338	13540995	-	TVN0164	-	phosphoribosylaminoimidazole synthetase
165	 40.31	0	175536..176453	-	305	13540996	-	TVN0165	-	ABC-type multidrug transport system, ATPase component
166	 38.16	0	176458..177285	-	275	13540997	-	TVN0166	-	ABC transporter permease
167	 41.38	0	177412..178020	+	202	13540998	-	TVN0167	-	Zn-dependent hydrolase
168	 41.77	0	178079..179275	+	398	13540999	-	TVN0168	-	galactonate dehydratase
169	 39.89	0	179306..180022	+	238	13541000	-	TVN0169	-	ATPase
170	 45.24	+1	180080..180289	+	69	13541001	-	TVN0170	-	hypothetical protein
171	 42.79	0	180390..180992	-	200	13541002	-	TVN0171	-	folate-dependent phosphoribosylglycinamide formyltransferase
172	 45.67	+1	181068..181448	-	126	13541003	-	TVN0172	-	hypothetical protein
173	 37.35	-1	181531..182103	-	190	13541004	tdk	TVN0173	-	thymidylate kinase
174	 41.97	0	182184..183353	+	389	13541005	-	TVN0174	-	cystathionine gamma-lyase
175	 40.93	0	183359..184108	-	249	13541006	-	TVN0175	-	deoxyribose-phosphate aldolase
176	 43.38	0	184113..185525	-	470	13541007	-	TVN0176	-	major facilitator superfamily permease
177	 31.75	-2	185679..185867	+	62	13541008	-	TVN0177	-	hypothetical protein
178	 36.80	-1	185868..186386	-	172	13541009	-	TVN0178	-	C4-type Zn finger protein
179	 43.58	0	186390..187433	-	347	13541010	-	TVN0179	-	isopentenyl pyrophosphate isomerase
180	 36.33	-1	187430..188164	-	244	13541011	-	TVN0180	-	kinase
181	 39.74	0	188161..188691	-	176	13541012	-	TVN0181	-	acetyltransferase
182	 39.27	0	188777..189568	+	263	13541013	-	TVN0182	-	Zn-dependent hydrolase
183	 39.96	0	189621..190586	-	321	13541014	-	TVN0183	-	phosphate uptake regulator
184	 37.25	-1	190639..191352	-	237	13541015	-	TVN0184	-	hypothetical protein
185	 41.71	0	191467..192051	+	194	13541016	-	TVN0185	-	transcription regulator
186	 41.76	0	192133..192666	+	177	13541017	-	TVN0186	-	hypothetical protein
187	 40.11	0	192660..193013	+	117	13541018	-	TVN0187	-	peptidyl-tRNA hydrolase
188	 33.92	-2	193127..193297	-	56	13541019	-	TVN0188	-	hypothetical protein
189	 43.35	0	193469..196114	+	881	13541020	-	TVN0189	-	aconitate hydratase
190	 43.90	0	196177..197397	+	406	13541021	-	TVN0190	-	threonine dehydratase
191	 39.13	0	197394..197945	+	183	13541022	-	TVN0191	-	RNA methylase
192	 38.38	0	198066..198521	+	151	13541023	-	TVN0192	-	transcription regulator
193	 42.66	0	198518..199096	-	192	13541024	-	TVN0193	-	SAM-dependent methyltransferase
194	 37.37	-1	199215..199907	+	230	13541025	aroD	TVN0194	-	3-dehydroquinate dehydratase
195	 46.72	+1	200001..201218	+	405	13541026	-	TVN0195	-	isocitrate dehydrogenase
196	 45.20	+1	201215..201922	-	235	13541027	-	TVN0196	-	hypothetical protein
197	 42.16	0	201915..202775	-	286	13541028	-	TVN0197	-	ribose-phosphate pyrophosphokinase
198	 43.58	0	202930..203661	+	243	13541029	-	TVN0198	-	enoyl-CoA hydratase
199	 41.08	0	203649..204668	+	339	13541030	-	TVN0199	-	N-acetylglucosamine kinase
200	 43.84	0	204657..206426	-	589	13541031	-	TVN0200	-	phosphoenolpyruvate carboxykinase
201	 41.98	0	206628..207356	-	242	13541032	-	TVN0201	-	metal-dependent hydrolase related to alanyl-tRNA synthetase
202	 40.57	0	207459..208121	+	220	13541033	-	TVN0202	-	glutaredoxin
203	 32.05	-2	208360..208593	+	77	13541034	-	TVN0203	-	hypothetical protein
204	 34.15	-1	208707..209075	+	122	13541035	-	TVN0204	-	hypothetical protein
205	 38.59	0	209230..210789	+	519	13541036	-	TVN0205	-	sugar-binding protein
206	 29.52	-2	210797..211687	+	296	13541037	-	TVN0206	-	ABC-type sugar transporter, permease component
207	 30.48	-2	211689..212495	+	268	13541038	-	TVN0207	-	sugar permease
208	 30.96	-2	212538..213590	+	350	13541039	-	TVN0208	-	ABC-type sugar transporter, ATPase component
209	 28.60	-2	215286..218327	+	1013	13541040	-	TVN0209	-	Alpha-mannosidase
210	 37.54	0	218796..219152	-	118	13541041	-	TVN0210	-	transcription regulator
211	 42.88	0	219258..219791	+	177	13541042	-	TVN0211	-	hypothetical protein
212	 41.20	0	219794..220708	+	304	13541043	-	TVN0212	-	Pirin-related protein
213	 37.68	0	220714..221772	-	352	13541044	-	TVN0213	-	transcription regulator
214	 39.62	0	221806..222171	-	121	13541045	-	TVN0214	-	hypothetical protein
215	 39.93	0	222256..222861	+	201	13541046	-	TVN0215	-	hypothetical protein
216	 34.55	-1	222877..224106	-	409	13541047	-	TVN0216	-	major facilitator superfamily permease
217	 36.03	-1	224208..226058	+	616	13541048	-	TVN0217	-	glycosidase
218	 40.60	0	226399..227999	-	533	13541049	-	TVN0218	-	amino acid transporter
219	 42.54	0	228061..229287	-	408	13541050	-	TVN0219	-	multidrug efflux permease
220	 37.92	0	229397..229963	-	188	13541051	-	TVN0220	-	hypothetical protein
221	 41.54	0	230102..230905	+	267	13541052	-	TVN0221	-	Signal peptidase I
222	 46.86	+1	230902..231426	-	174	13541053	-	TVN0222	-	peroxiredoxin
223	 41.12	0	231588..232268	+	226	13541054	-	TVN0223	-	cell wall biosynthesis glycosyltransferase
224	 41.96	0	232273..233466	-	397	13541055	-	TVN0224	-	major facilitator superfamily permease
225	 40.00	0	233580..233939	+	119	13541056	-	TVN0225	-	hypothetical protein
226	 41.84	0	233936..235228	-	430	13541057	-	TVN0226	-	major facilitator superfamily permease
227	 38.43	0	235331..238018	-	895	13541058	-	TVN0227	-	chromosome segregation protein
228	 43.72	0	238008..239114	-	368	13541059	-	TVN0228	-	DNA repair exonuclease
229	 42.39	0	239138..240694	-	518	13541060	-	TVN0229	-	ATPase
230	 40.28	0	240654..241661	-	335	13541061	-	TVN0230	-	hypothetical protein
231	 43.06	0	241856..242719	+	287	13541062	-	TVN0231	-	3-hydroxyisobutyrate dehydrogenase
232	 42.88	0	242725..244368	+	547	13541063	-	TVN0232	-	NADH:flavin oxidoreductase
40.87	MEAN

3.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.