IslandPath Analysis: Thermoplasma volcanium GSS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.87   STD DEV: 3.44
Thermoplasma volcanium GSS1, complete genome - 1..1584804
1499 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1400	 43.97	0	1472194..1473030	+	278	13542231	-	TVN1400	-	adenine-specific DNA methylase
1401	 46.24	+1	1473053..1473478	+	141	13542232	-	TVN1401	-	stress-induced protein
1402	 44.12	0	1473494..1474114	-	206	13542233	-	TVN1402	-	alpha/beta superfamily hydrolase
1403	 46.05	+1	1474209..1475309	-	366	13542234	-	TVN1403	-	HD family phosphatase
1404	 42.59	0	1475681..1476274	+	197	13542235	-	TVN1404	-	SAM-dependent methyltransferase
1405	 49.85	+2	1477077..1477736	+	219	13542236	-	TVN1405	-	hypothetical protein
1406	 41.94	0	1478495..1479238	+	247	13542237	fabG	TVN1406	-	3-ketoacyl-(acyl-carrier-protein) reductase
1407	 38.25	0	1479283..1480482	-	399	13542238	-	TVN1407	-	major facilitator superfamily permease
1408	 37.19	-1	1480525..1481172	+	215	13542239	-	TVN1408	-	transcription regulator
1409	 48.10	+2	1483149..1483385	-	78	13542240	-	TVN1409	-	IS5 inactivated transposase
1410	 46.14	+1	1483393..1484040	-	215	13542241	-	TVN1410	-	IS5 inactivated transposase
1411	 31.77	-2	1484829..1485662	+	277	13542242	-	TVN1411	-	hypothetical protein
1412	 39.86	0	1485676..1485966	-	96	13542243	-	TVN1412	-	hypothetical protein
1413	 35.02	-1	1487043..1487993	+	316	13542244	-	TVN1413	-	adenine-specific DNA methylase
1414	 34.85	-1	1488041..1488832	+	263	13542245	-	TVN1414	-	hypothetical protein
1415	 32.37	-2	1489932..1490552	+	206	13542246	-	TVN1415	-	hypothetical protein
1416	 33.33	-2	1490633..1491781	+	382	13542247	-	TVN1416	-	adenine-specific DNA methylase
1417	 46.67	+1	1493094..1493393	-	99	13542248	-	TVN1417	-	hypothetical protein
1418	 47.19	+1	1494356..1494658	+	100	13542249	-	TVN1418	-	hypothetical protein
1419	 39.62	0	1494892..1496037	-	381	13542250	-	TVN1419	-	multidrug efflux permease
1420	 40.76	0	1496158..1497099	-	313	13542251	-	TVN1420	-	hypothetical protein
1421	 45.34	+1	1497152..1497634	+	160	13542252	-	TVN1421	-	hypothetical protein
1422	 40.13	0	1497808..1498425	-	205	13542253	-	TVN1422	-	transcription regulator
1423	 45.34	+1	1498611..1500026	-	471	13542254	-	TVN1423	-	amino acid transporter
1424	 42.16	0	1500171..1502957	+	928	13542255	-	TVN1424	-	ABC-type peptide transport system, solute-binding component
1425	 42.90	0	1503014..1504393	-	459	13542256	-	TVN1425	-	multidrug efflux permease
1426	 45.40	+1	1504499..1505227	-	242	13542257	-	TVN1426	-	flagellin
1427	 40.50	0	1505360..1506196	+	278	13542258	-	TVN1427	-	transposase
1428	 40.04	0	1506208..1506684	+	158	13542259	-	TVN1428	-	GTP:adenosylcobinamide-phosphate guanylyltransferase
1429	 42.61	0	1506668..1507411	-	247	13542260	-	TVN1429	-	ABC-type Fe3+-siderophores transporter, ATPase component
1430	 45.45	+1	1507408..1507869	-	153	13542261	-	TVN1430	-	hypothetical protein
1431	 47.27	+1	1507900..1508394	-	164	13542262	-	TVN1431	-	hypothetical protein
1432	 45.21	+1	1508405..1509541	-	378	13542263	-	TVN1432	-	NAD(FAD)-dependent dehydrogenase
1433	 47.26	+1	1509547..1509783	-	78	13542264	-	TVN1433	-	transcription regulator
1434	 45.89	+1	1509794..1510207	-	137	13542265	-	TVN1434	-	hypothetical protein
1435	 38.99	0	1510489..1510824	+	111	13542266	-	TVN1435	-	DNA-directed RNA polymerase subunit L
1436	 41.74	0	1510821..1511783	+	320	13542267	-	TVN1436	-	DNA modification methylase
1437	 44.24	0	1511805..1513619	+	604	13542268	-	TVN1437	-	RNA-binding protein  snRNP
1438	 42.51	0	1513716..1514630	+	304	13542269	-	TVN1438	-	bifunctional phosphoglucose/phosphomannose isomerase
1439	 43.18	0	1514647..1515408	-	253	13542270	-	TVN1439	-	hypothetical protein
1440	 43.51	0	1515492..1515776	+	94	13542271	-	TVN1440	-	hypothetical protein
1441	 41.99	0	1515782..1516243	-	153	13542272	-	TVN1441	-	RNA-binding protein
1442	 40.18	0	1516240..1517583	-	447	13542273	-	TVN1442	-	hypothetical protein
1443	 41.64	0	1517588..1518454	-	288	13542274	nusG	TVN1443	-	transcription antitermination protein NusG
1444	 42.22	0	1518472..1518786	-	104	13542275	-	TVN1444	-	protein translocase subunit Sss1
1445	 44.77	+1	1520544..1521671	-	375	13542276	-	TVN1445	-	hypothetical protein
1446	 42.57	0	1521948..1523495	-	515	13542277	-	TVN1446	-	alternative thymidylate synthase
1447	 41.10	0	1523650..1523868	+	72	13542278	-	TVN1447	-	transcription regulator (HTH)
1448	 41.42	0	1523979..1525115	+	378	13542279	-	TVN1448	-	hypothetical protein
1449	 39.24	0	1525112..1525771	+	219	13542280	-	TVN1449	-	hypothetical protein
1450	 44.90	+1	1526026..1526682	+	218	13542281	-	TVN1450	-	L-fuculose-phosphate aldolase
1451	 43.70	0	1527255..1527611	+	118	13542282	-	TVN1451	-	hypothetical protein
1452	 43.46	0	1527620..1528192	+	190	13542283	-	TVN1452	-	rusticyanin
1453	 42.75	0	1528548..1529492	+	314	13542284	-	TVN1453	-	formate hydrogenlyase, subunit 4
1454	 39.30	0	1529489..1530142	+	217	13542285	-	TVN1454	-	hypothetical protein
1455	 42.34	0	1530139..1531482	+	447	13542286	-	TVN1455	-	hydrogenase 4 subunit F
1456	 44.27	0	1531469..1532638	+	389	13542287	-	TVN1456	-	Ni,Fe-hydrogenase III large subunit
1457	 47.09	+1	1532635..1533303	+	222	13542288	-	TVN1457	-	Ni,Fe-hydrogenase III small subunit
1458	 42.37	0	1533306..1535075	+	589	13542289	-	TVN1458	-	hydrogenase 4 subunit B
1459	 43.16	0	1536123..1537058	-	311	13542290	-	TVN1459	-	phosphate permease
1460	 37.02	-1	1537727..1538296	-	189	13542291	-	TVN1460	-	hypothetical protein
1461	 35.34	-1	1538342..1538689	-	115	13542292	-	TVN1461	-	hypothetical protein
1462	 40.23	0	1539219..1539392	+	57	13542293	-	TVN1462	-	hypothetical protein
1463	 39.38	0	1539639..1542170	-	843	13542294	-	TVN1463	-	Type III restriction-modification enzyme, helicase subunit
1464	 38.25	0	1542167..1544017	-	616	13542295	-	TVN1464	-	adenine specific DNA methylase
1465	 42.72	0	1544340..1544648	-	102	13542296	-	TVN1465	-	hypothetical protein
1466	 43.65	0	1545079..1545912	-	277	13542297	-	TVN1466	-	AAA family ATPase
1467	 39.58	0	1547379..1547906	-	175	13542298	-	TVN1467	-	hypothetical protein
1468	 41.94	0	1548174..1548359	+	61	13542299	-	TVN1468	-	hypothetical protein
1469	 35.46	-1	1548379..1548519	-	46	13542300	-	TVN1469	-	hypothetical protein
1470	 36.34	-1	1548715..1549047	-	110	13542301	-	TVN1470	-	hypothetical protein
1471	 36.28	-1	1549136..1550017	-	293	13542302	-	TVN1471	-	hypothetical protein
1472	 39.52	0	1550441..1550650	-	69	13542303	-	TVN1472	-	hypothetical protein
1473	 38.65	0	1550926..1551546	-	206	13542304	-	TVN1473	-	hypothetical protein
1474	 40.68	0	1552310..1552486	+	58	13542305	-	TVN1474	-	hypothetical protein
1475	 43.15	0	1552703..1555627	-	974	13542306	-	TVN1475	-	Type III restriction-modification enzyme, helicase subunit
1476	 41.54	0	1555627..1557672	-	681	13542307	-	TVN1476	-	adenine specific DNA methylase
1477	 46.11	+1	1557707..1558786	-	359	13542308	-	TVN1477	-	AAA family ATPase
1478	 49.34	+2	1559049..1559654	-	201	13542309	-	TVN1478	-	site-specific recombinase, DNA invertase Pin-related
1479	 41.18	0	1560032..1560541	-	169	13542310	-	TVN1479	-	hypothetical protein
1480	 47.22	+1	1560863..1561618	-	251	13542311	-	TVN1480	-	ATPase involved in chromosome partitioning
1481	 47.53	+1	1561939..1563720	-	593	13542312	-	TVN1481	-	ATPase
1482	 45.54	+1	1563727..1564062	-	111	13542313	-	TVN1482	-	hypothetical protein
1483	 47.54	+1	1564065..1564430	-	121	13542314	-	TVN1483	-	hypothetical protein
1484	 40.61	0	1564647..1565306	-	219	13542315	-	TVN1484	-	hypothetical protein
1485	 45.27	+1	1565306..1565548	-	80	13542316	-	TVN1485	-	integrase/recombinase
1486	 34.27	-1	1565673..1565885	-	70	13542317	-	TVN1486	-	hypothetical protein
1487	 40.15	0	1566346..1566873	-	175	13542318	-	TVN1487	-	hypothetical protein
1488	 42.06	0	1566919..1567560	-	213	13542319	-	TVN1488	-	hypothetical protein
1489	 46.82	+1	1567752..1569041	-	429	13542320	-	TVN1489	-	integrase/recombinase
1490	 40.86	0	1569195..1570736	+	513	13542321	-	TVN1490	-	RNA helicase (ERCC4-like)
1491	 42.01	0	1570739..1571695	-	318	13542322	rfc	TVN1491	-	replication factor C small subunit
1492	 44.39	+1	1571797..1573134	-	445	13542323	-	TVN1492	-	glutamine synthetase
1493	 42.31	0	1573262..1573729	+	155	13542324	-	TVN1493	-	transcription regulator
1494	 42.12	0	1574003..1578382	+	1459	13542325	-	TVN1494	-	hypothetical protein
1495	 42.67	0	1578466..1579590	+	374	13542326	-	TVN1495	-	geranylgeranyl reductase
1496	 41.03	0	1579713..1580570	+	285	13542327	-	TVN1496	-	DMT family permease
1497	 40.44	0	1580555..1582453	-	632	13542328	-	TVN1497	-	7-cyano-7-deazaguanine tRNA-ribosyltransferase
1498	 42.37	0	1582460..1584229	-	589	13542329	-	TVN1498	-	putative ATPase RIL
1499	 38.41	0	1584239..1584691	-	150	13542330	-	TVN1499	-	hypothetical protein
40.87	MEAN

3.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.