IslandPath Analysis: Thermoplasma volcanium GSS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.87   STD DEV: 3.44
Thermoplasma volcanium GSS1, complete genome - 1..1584804
1499 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1347	 42.86	0	1419648..1419878	+	76	13542178	-	TVN1347	-	transcription regulator
1348	 43.53	0	1420005..1420367	+	120	13542179	-	TVN1348	-	hypothetical protein
1349	 40.78	0	1420446..1420982	+	178	13542180	-	TVN1349	-	chorismate mutase
1350	 39.56	0	1420979..1421572	+	197	13542181	-	TVN1350	-	prephenate dehydrogenase
1351	 41.64	0	1421569..1422507	+	312	13542182	-	TVN1351	-	3-deoxy-7-phosphoheptulonate synthase
1352	 40.93	0	1422495..1423547	-	350	13542183	-	TVN1352	-	pyruvate-formate lyase-activating enzyme
1353	 43.82	0	1423778..1425265	+	495	13542184	hutH	TVN1353	-	histidine ammonia-lyase
1354	 40.58	0	1425262..1425606	-	114	13542185	-	TVN1354	-	hypothetical protein
1355	 38.44	0	1425726..1427135	-	469	13542186	-	TVN1355	-	amino acid transporter
1356	 45.25	+1	1427251..1428912	+	553	13542187	-	TVN1356	-	urocanate hydratase
1357	 40.58	0	1428909..1430123	+	404	13542188	-	TVN1357	-	imidazolonepropionase
1358	 39.75	0	1430252..1431061	-	269	13542189	-	TVN1358	-	hypothetical protein
1359	 44.06	0	1431058..1431663	-	201	13542190	-	TVN1359	-	hypothetical protein
1360	 43.89	0	1431896..1433041	+	381	13542191	-	TVN1360	-	metal-dependent amidohydrolase
1361	 43.19	0	1433046..1433978	+	310	13542192	-	TVN1361	-	microcin C7 resistance protein MccF-like protein
1362	 37.04	-1	1433995..1434210	-	71	13542193	-	TVN1362	-	hypothetical protein
1363	 41.77	0	1434253..1434738	-	161	13542194	-	TVN1363	-	major facilitator superfamily permease
1364	 41.00	0	1434889..1435605	-	238	13542195	-	TVN1364	-	sugar transport permease
1365	 39.69	0	1435680..1436858	-	392	13542196	-	TVN1365	-	major facilitator superfamily permease
1366	 44.91	+1	1437000..1438442	+	480	13542197	-	TVN1366	-	multidrug efflux permease
1367	 41.61	0	1438477..1439394	+	305	13542198	-	TVN1367	-	ABC-type multidrug transport system, ATPase component
1368	 42.09	0	1439391..1440155	+	254	13542199	-	TVN1368	-	ABC transporter permease
1369	 42.02	0	1440158..1440802	+	214	13542200	-	TVN1369	-	phosphoribosyltransferase
1370	 40.32	0	1441065..1441436	+	123	13542201	-	TVN1370	-	hypothetical protein
1371	 39.47	0	1441923..1442264	+	113	13542202	-	TVN1371	-	hypothetical protein
1372	 42.44	0	1442259..1443653	-	464	13542203	-	TVN1372	-	DNA polymerase II small subunit
1373	 43.24	0	1443757..1444614	+	285	13542204	-	TVN1373	-	DMT family permease
1374	 40.32	0	1444617..1445804	-	395	13542205	-	TVN1374	-	NAD-dependent aldehyde dehydrogenase
1375	 47.67	+1	1445839..1447296	-	485	13542206	-	TVN1375	-	inositol-5-monophosphate dehydrogenase
1376	 41.33	0	1447366..1448115	-	249	13542207	-	TVN1376	-	solute-binding protein
1377	 42.26	0	1448112..1449209	-	365	13542208	-	TVN1377	-	hypothetical protein
1378	 43.14	0	1449429..1451111	+	560	13542209	-	TVN1378	-	Fe-S oxidoreductase
1379	 43.78	0	1451146..1452246	+	366	13542210	-	TVN1379	-	hypothetical protein
1380	 40.57	0	1452239..1453468	+	409	13542211	truD	TVN1380	-	tRNA pseudouridine synthase D
1381	 43.12	0	1453486..1454865	-	459	13542212	-	TVN1381	-	membrane glycosyltransferase
1382	 44.44	+1	1454962..1455843	-	293	13542213	-	TVN1382	-	electron transfer flavoprotein subunit alpha
1383	 44.44	+1	1455840..1456577	-	245	13542214	-	TVN1383	-	electron transfer flavoprotein subunit beta
1384	 40.87	0	1456691..1457884	-	397	13542215	-	TVN1384	-	major facilitator superfamily permease
1385	 43.98	0	1457991..1458422	+	143	13542216	-	TVN1385	-	hypothetical protein
1386	 44.42	+1	1458424..1459776	-	450	13542217	-	TVN1386	-	dihydrolipoamide dehydrogenase
1387	 42.05	0	1459898..1460734	+	278	13542218	-	TVN1387	-	CBS domain-containing protein
1388	 44.16	0	1460731..1462161	+	476	13542219	-	TVN1388	-	glycyl-tRNA synthetase
1389	 43.46	0	1462163..1463377	-	404	13542220	-	TVN1389	-	membrane component of an uncharacterized iron-regulated ABC-type transporter
1390	 45.99	+1	1463374..1464819	-	481	13542221	-	TVN1390	-	membrane component of an uncharacterized iron-regulated ABC-type transporter
1391	 45.88	+1	1464820..1465560	-	246	13542222	-	TVN1391	-	Iron-regulated ABC transporter ATPase subunit
1392	 41.36	0	1465653..1466300	+	215	13542223	-	TVN1392	-	transcription regulator
1393	 47.52	+1	1466311..1466613	+	100	13542224	-	TVN1393	-	aromatic ring hydroxylating enzyme
1394	 43.24	0	1466683..1467237	+	184	13542225	-	TVN1394	-	transcription factor
1395	 44.85	+1	1467238..1469217	-	659	13542226	-	TVN1395	-	Fe-S oxidoreductase
1396	 43.35	0	1469397..1470524	-	375	13542227	-	TVN1396	-	major facilitator superfamily permease
1397	 41.19	0	1470598..1470915	+	105	13542228	-	TVN1397	-	hypothetical protein
1398	 44.33	+1	1470916..1471506	-	196	13542229	-	TVN1398	-	hypothetical protein
1399	 40.88	0	1471558..1472127	+	189	13542230	-	TVN1399	-	ankyrin repeat-containing protein
1400	 43.97	0	1472194..1473030	+	278	13542231	-	TVN1400	-	adenine-specific DNA methylase
1401	 46.24	+1	1473053..1473478	+	141	13542232	-	TVN1401	-	stress-induced protein
1402	 44.12	0	1473494..1474114	-	206	13542233	-	TVN1402	-	alpha/beta superfamily hydrolase
1403	 46.05	+1	1474209..1475309	-	366	13542234	-	TVN1403	-	HD family phosphatase
1404	 42.59	0	1475681..1476274	+	197	13542235	-	TVN1404	-	SAM-dependent methyltransferase
1405	 49.85	+2	1477077..1477736	+	219	13542236	-	TVN1405	-	hypothetical protein
1406	 41.94	0	1478495..1479238	+	247	13542237	fabG	TVN1406	-	3-ketoacyl-(acyl-carrier-protein) reductase
1407	 38.25	0	1479283..1480482	-	399	13542238	-	TVN1407	-	major facilitator superfamily permease
1408	 37.19	-1	1480525..1481172	+	215	13542239	-	TVN1408	-	transcription regulator
1409	 48.10	+2	1483149..1483385	-	78	13542240	-	TVN1409	-	IS5 inactivated transposase
1410	 46.14	+1	1483393..1484040	-	215	13542241	-	TVN1410	-	IS5 inactivated transposase
1411	 31.77	-2	1484829..1485662	+	277	13542242	-	TVN1411	-	hypothetical protein
1412	 39.86	0	1485676..1485966	-	96	13542243	-	TVN1412	-	hypothetical protein
1413	 35.02	-1	1487043..1487993	+	316	13542244	-	TVN1413	-	adenine-specific DNA methylase
1414	 34.85	-1	1488041..1488832	+	263	13542245	-	TVN1414	-	hypothetical protein
1415	 32.37	-2	1489932..1490552	+	206	13542246	-	TVN1415	-	hypothetical protein
1416	 33.33	-2	1490633..1491781	+	382	13542247	-	TVN1416	-	adenine-specific DNA methylase
1417	 46.67	+1	1493094..1493393	-	99	13542248	-	TVN1417	-	hypothetical protein
1418	 47.19	+1	1494356..1494658	+	100	13542249	-	TVN1418	-	hypothetical protein
1419	 39.62	0	1494892..1496037	-	381	13542250	-	TVN1419	-	multidrug efflux permease
1420	 40.76	0	1496158..1497099	-	313	13542251	-	TVN1420	-	hypothetical protein
1421	 45.34	+1	1497152..1497634	+	160	13542252	-	TVN1421	-	hypothetical protein
1422	 40.13	0	1497808..1498425	-	205	13542253	-	TVN1422	-	transcription regulator
1423	 45.34	+1	1498611..1500026	-	471	13542254	-	TVN1423	-	amino acid transporter
1424	 42.16	0	1500171..1502957	+	928	13542255	-	TVN1424	-	ABC-type peptide transport system, solute-binding component
1425	 42.90	0	1503014..1504393	-	459	13542256	-	TVN1425	-	multidrug efflux permease
1426	 45.40	+1	1504499..1505227	-	242	13542257	-	TVN1426	-	flagellin
1427	 40.50	0	1505360..1506196	+	278	13542258	-	TVN1427	-	transposase
1428	 40.04	0	1506208..1506684	+	158	13542259	-	TVN1428	-	GTP:adenosylcobinamide-phosphate guanylyltransferase
1429	 42.61	0	1506668..1507411	-	247	13542260	-	TVN1429	-	ABC-type Fe3+-siderophores transporter, ATPase component
1430	 45.45	+1	1507408..1507869	-	153	13542261	-	TVN1430	-	hypothetical protein
1431	 47.27	+1	1507900..1508394	-	164	13542262	-	TVN1431	-	hypothetical protein
1432	 45.21	+1	1508405..1509541	-	378	13542263	-	TVN1432	-	NAD(FAD)-dependent dehydrogenase
1433	 47.26	+1	1509547..1509783	-	78	13542264	-	TVN1433	-	transcription regulator
1434	 45.89	+1	1509794..1510207	-	137	13542265	-	TVN1434	-	hypothetical protein
1435	 38.99	0	1510489..1510824	+	111	13542266	-	TVN1435	-	DNA-directed RNA polymerase subunit L
1436	 41.74	0	1510821..1511783	+	320	13542267	-	TVN1436	-	DNA modification methylase
1437	 44.24	0	1511805..1513619	+	604	13542268	-	TVN1437	-	RNA-binding protein  snRNP
1438	 42.51	0	1513716..1514630	+	304	13542269	-	TVN1438	-	bifunctional phosphoglucose/phosphomannose isomerase
1439	 43.18	0	1514647..1515408	-	253	13542270	-	TVN1439	-	hypothetical protein
1440	 43.51	0	1515492..1515776	+	94	13542271	-	TVN1440	-	hypothetical protein
1441	 41.99	0	1515782..1516243	-	153	13542272	-	TVN1441	-	RNA-binding protein
1442	 40.18	0	1516240..1517583	-	447	13542273	-	TVN1442	-	hypothetical protein
1443	 41.64	0	1517588..1518454	-	288	13542274	nusG	TVN1443	-	transcription antitermination protein NusG
1444	 42.22	0	1518472..1518786	-	104	13542275	-	TVN1444	-	protein translocase subunit Sss1
1445	 44.77	+1	1520544..1521671	-	375	13542276	-	TVN1445	-	hypothetical protein
1446	 42.57	0	1521948..1523495	-	515	13542277	-	TVN1446	-	alternative thymidylate synthase
40.87	MEAN

3.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.