IslandPath Analysis: Thermoplasma volcanium GSS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.87   STD DEV: 3.44
Thermoplasma volcanium GSS1, complete genome - 1..1584804
1499 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1267	 35.93	-1	1330971..1331393	-	140	13542098	-	TVN1267	-	hypothetical protein
1268	 44.78	+1	1331499..1333358	-	619	13542099	-	TVN1268	-	Acyl-coenzyme A synthetase
1269	 43.26	0	1333406..1334554	-	382	13542100	-	TVN1269	-	isovaleryl-CoA dehydrogenase
1270	 39.34	0	1334636..1335184	-	182	13542101	-	TVN1270	-	molybdopterin-guanine dinucleotide biosynthesis protein
1271	 42.42	0	1335287..1336408	-	373	13542102	-	TVN1271	-	saccharopine dehydrogenase
1272	 42.20	0	1336486..1336812	-	108	13542103	-	TVN1272	-	transcription regulator
1273	 39.22	0	1336820..1337515	-	231	13542104	-	TVN1273	-	endonuclease III-like protein
1274	 43.37	0	1337512..1338747	-	411	13542105	-	TVN1274	-	translation initiation factor IF-2 subunit gamma
1275	 43.41	0	1338731..1339117	-	128	13542106	-	TVN1275	-	30S ribosomal protein S6e
1276	 44.00	0	1339245..1340828	+	527	13542107	-	TVN1276	-	O-sialoglycoprotein endopeptidase/protein kinase
1277	 36.74	-1	1340821..1341378	+	185	13542108	-	TVN1277	-	xanthosine triphosphate pyrophosphatase-like protein
1278	 43.82	0	1341660..1342946	+	428	13542109	-	TVN1278	-	dehydrogenase (flavoprotein)
1279	 39.56	0	1342957..1343229	+	90	13542110	-	TVN1279	-	ferredoxin-like protein
1280	 43.46	0	1343254..1344033	+	259	13542111	-	TVN1280	-	electron transfer flavoprotein subunit beta
1281	 45.43	+1	1344030..1345079	+	349	13542112	-	TVN1281	-	electron transfer flavoprotein subunit alpha
1282	 43.02	0	1345067..1347049	-	660	13542113	thrS	TVN1282	-	threonyl-tRNA synthetase
1283	 40.96	0	1347387..1348697	-	436	13542114	-	TVN1283	-	NAD-dependent aldehyde dehydrogenase
1284	 43.86	0	1348694..1349995	-	433	13542115	-	TVN1284	-	alcohol dehydrogenase IV
1285	 44.73	+1	1350001..1350816	-	271	13542116	-	TVN1285	-	Zn-dependent hydrolase (AttM-related)
1286	 39.80	0	1351159..1351854	-	231	13542117	-	TVN1286	-	hypothetical protein
1287	 40.34	0	1351870..1352511	-	213	13542118	-	TVN1287	-	triosephosphate isomerase
1288	 47.37	+1	1352610..1353122	-	170	13542119	-	TVN1288	-	deoxycytidylate deaminase
1289	 34.04	-1	1353176..1353460	-	94	13542120	-	TVN1289	-	hypothetical protein
1290	 45.03	+1	1353500..1354918	-	472	13542121	-	TVN1290	-	hypothetical protein
1291	 40.45	0	1355049..1355933	-	294	13542122	hemH	TVN1291	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1292	 39.34	0	1356017..1357015	+	332	13542123	hemE	TVN1292	-	uroporphyrinogen decarboxylase
1293	 41.53	0	1357012..1357926	+	304	13542124	hemH	TVN1293	-	ferrochelatase
1294	 40.72	0	1358012..1358959	+	315	13542125	-	TVN1294	-	dolichol kinase
1295	 41.00	0	1359071..1359370	-	99	13542126	-	TVN1295	-	hypothetical protein
1296	 37.76	0	1359439..1359732	-	97	13542127	-	TVN1296	-	hypothetical protein
1297	 45.65	+1	1359744..1360214	-	156	13542128	-	TVN1297	-	phosphoribosylcarboxyaminoimidazole carboxylase catalytic subunit
1298	 40.70	0	1360240..1361325	-	361	13542129	-	TVN1298	-	translation factor (SUA5-related)
1299	 41.79	0	1361435..1363786	+	783	13542130	-	TVN1299	-	aminopeptidase N
1300	 43.57	0	1363800..1365323	-	507	13542131	-	TVN1300	-	Na+/panthothenate symporter permease
1301	 40.80	0	1365320..1365520	-	66	13542132	-	TVN1301	-	hypothetical protein
1302	 40.10	0	1365594..1367885	-	763	13542133	-	TVN1302	-	Alpha-glucosidase
1303	 39.79	0	1368057..1369187	-	376	13542134	-	TVN1303	-	RNA helicase
1304	 46.10	+1	1369451..1370641	+	396	13542135	-	TVN1304	-	acetyl-CoA acetyltransferase
1305	 41.98	0	1370643..1371752	+	369	13542136	-	TVN1305	-	Acyl-CoA dehydrogenase
1306	 42.56	0	1371752..1372228	+	158	13542137	-	TVN1306	-	Acyl-CoA dehydrogenase
1307	 43.73	0	1372249..1372758	+	169	13542138	-	TVN1307	-	Acyl-CoA dehydrogenase
1308	 42.79	0	1373162..1373563	-	133	13542139	-	TVN1308	-	hypothetical protein
1309	 42.89	0	1373719..1375308	+	529	13542140	-	TVN1309	-	acyl-CoA synthetase
1310	 43.74	0	1375310..1377289	-	659	13542141	-	TVN1310	-	3-hydroxyacyl-CoA dehydrogenase
1311	 36.09	-1	1377296..1377622	-	108	13542142	-	TVN1311	-	sterol carrier protein
1312	 40.68	0	1377730..1378260	-	176	13542143	-	TVN1312	-	CBS domain-containing protein
1313	 45.74	+1	1378444..1380120	+	558	13542144	-	TVN1313	-	Fe-S oxidoreductase
1314	 42.79	0	1380154..1381158	+	334	13542145	-	TVN1314	-	oxidoreductase
1315	 42.67	0	1381191..1383032	-	613	13542146	-	TVN1315	-	hypothetical protein
1316	 41.55	0	1383228..1384310	+	360	13542147	aroB	TVN1316	-	3-dehydroquinate synthase
1317	 39.55	0	1384297..1385100	+	267	13542148	aroE	TVN1317	-	shikimate 5-dehydrogenase
1318	 42.87	0	1385087..1385893	+	268	13542149	-	TVN1318	-	shikimate kinase
1319	 41.61	0	1385883..1387115	+	410	13542150	-	TVN1319	-	3-phosphoshikimate 1-carboxyvinyltransferase
1320	 39.80	0	1387144..1388781	+	545	13542151	argS	TVN1320	-	arginyl-tRNA synthetase
1321	 39.69	0	1388786..1391662	-	958	13542152	-	TVN1321	-	hypothetical protein
1322	 44.11	0	1391663..1393063	-	466	13542153	-	TVN1322	-	hypothetical protein
1323	 37.35	-1	1393485..1393808	+	107	13542154	-	TVN1323	-	hypothetical protein
1324	 40.64	0	1393839..1394372	+	177	13542155	-	TVN1324	-	acetyltransferase
1325	 36.90	-1	1394373..1394708	-	111	13542156	-	TVN1325	-	hypothetical protein
1326	 39.38	0	1395016..1395957	+	313	13542157	-	TVN1326	-	Fe-S oxidoreductase
1327	 34.52	-1	1395987..1396322	-	111	13542158	-	TVN1327	-	hypothetical protein
1328	 41.70	0	1396300..1397733	-	477	13542159	-	TVN1328	-	ABC-type peptide transporter, ATPase component
1329	 38.88	0	1397733..1399301	-	522	13542160	-	TVN1329	-	ABC-type peptide transport system, ATPase component
1330	 40.83	0	1399304..1400263	-	319	13542161	-	TVN1330	-	ABC-type peptide transporter, permease component
1331	 41.85	0	1400273..1401364	-	363	13542162	-	TVN1331	-	ABC-type peptide transport system, permease component
1332	 42.42	0	1401500..1404382	-	960	13542163	-	TVN1332	-	ABC-type peptide transport system, solute-binding component
1333	 35.96	-1	1404760..1405254	+	164	13542164	-	TVN1333	-	hypothetical protein
1334	 43.16	0	1405258..1406112	-	284	13542165	-	TVN1334	-	2-oxoacid ferredoxin oxidoreductase subunit beta
1335	 42.21	0	1406112..1407869	-	585	13542166	-	TVN1335	-	2-oxoacid--ferredoxin oxidoreductase, alpha subunit
1336	 41.27	0	1408056..1409429	+	457	13542167	aspA	TVN1336	-	aspartate ammonia-lyase
1337	 38.58	0	1409444..1409977	-	177	13542168	-	TVN1337	-	transcription regulator
1338	 40.13	0	1410138..1411343	+	401	13542169	-	TVN1338	-	2-methylthioadenine synthetase
1339	 41.35	0	1411317..1412327	-	336	13542170	-	TVN1339	-	diphthamide synthase subunit DPH2
1340	 35.65	-1	1412448..1413137	-	229	13542171	-	TVN1340	-	hypothetical protein
1341	 40.16	0	1413232..1413744	-	170	13542172	-	TVN1341	-	hypothetical protein
1342	 42.27	0	1413828..1415270	-	480	13542173	-	TVN1342	-	sugar transport permease
1343	 40.05	0	1415417..1416517	-	366	13542174	-	TVN1343	-	Acyl-CoA dehydrogenase
1344	 40.62	0	1416654..1417421	+	255	13542175	fabG	TVN1344	-	3-ketoacyl-(acyl-carrier-protein) reductase
1345	 41.07	0	1417485..1418453	+	322	13542176	-	TVN1345	-	dehydrogenase
1346	 41.07	0	1418445..1419530	-	361	13542177	-	TVN1346	-	N-acylamino acid racemase
1347	 42.86	0	1419648..1419878	+	76	13542178	-	TVN1347	-	transcription regulator
1348	 43.53	0	1420005..1420367	+	120	13542179	-	TVN1348	-	hypothetical protein
1349	 40.78	0	1420446..1420982	+	178	13542180	-	TVN1349	-	chorismate mutase
1350	 39.56	0	1420979..1421572	+	197	13542181	-	TVN1350	-	prephenate dehydrogenase
1351	 41.64	0	1421569..1422507	+	312	13542182	-	TVN1351	-	3-deoxy-7-phosphoheptulonate synthase
1352	 40.93	0	1422495..1423547	-	350	13542183	-	TVN1352	-	pyruvate-formate lyase-activating enzyme
1353	 43.82	0	1423778..1425265	+	495	13542184	hutH	TVN1353	-	histidine ammonia-lyase
1354	 40.58	0	1425262..1425606	-	114	13542185	-	TVN1354	-	hypothetical protein
1355	 38.44	0	1425726..1427135	-	469	13542186	-	TVN1355	-	amino acid transporter
1356	 45.25	+1	1427251..1428912	+	553	13542187	-	TVN1356	-	urocanate hydratase
1357	 40.58	0	1428909..1430123	+	404	13542188	-	TVN1357	-	imidazolonepropionase
1358	 39.75	0	1430252..1431061	-	269	13542189	-	TVN1358	-	hypothetical protein
1359	 44.06	0	1431058..1431663	-	201	13542190	-	TVN1359	-	hypothetical protein
1360	 43.89	0	1431896..1433041	+	381	13542191	-	TVN1360	-	metal-dependent amidohydrolase
1361	 43.19	0	1433046..1433978	+	310	13542192	-	TVN1361	-	microcin C7 resistance protein MccF-like protein
1362	 37.04	-1	1433995..1434210	-	71	13542193	-	TVN1362	-	hypothetical protein
1363	 41.77	0	1434253..1434738	-	161	13542194	-	TVN1363	-	major facilitator superfamily permease
1364	 41.00	0	1434889..1435605	-	238	13542195	-	TVN1364	-	sugar transport permease
1365	 39.69	0	1435680..1436858	-	392	13542196	-	TVN1365	-	major facilitator superfamily permease
1366	 44.91	+1	1437000..1438442	+	480	13542197	-	TVN1366	-	multidrug efflux permease
40.87	MEAN

3.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.