IslandPath Analysis: Thermoplasma volcanium GSS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.87   STD DEV: 3.44
Thermoplasma volcanium GSS1, complete genome - 1..1584804
1499 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1237	 40.69	0	1298537..1300303	-	588	13542068	-	TVN1237	-	ATP-dependent DNA ligase
1238	 43.74	0	1300339..1302039	-	566	13542069	-	TVN1238	-	amino acid transporter
1239	 43.84	0	1302262..1304136	+	624	13542070	-	TVN1239	-	aldehyde:ferredoxin oxidoreductase
1240	 41.58	0	1304145..1306205	-	686	13542071	-	TVN1240	-	cation transport ATPase
1241	 34.78	-1	1306291..1306428	+	45	13542072	-	TVN1241	-	hypothetical protein
1242	 38.71	0	1306495..1306680	+	61	13542073	-	TVN1242	-	metal-binding protein
1243	 40.80	0	1306677..1307855	-	392	13542074	-	TVN1243	-	nicotinate phosphoribosyltransferase
1244	 38.75	0	1307912..1309276	-	454	13542075	cysS	TVN1244	-	cysteinyl-tRNA synthetase
1245	 39.12	0	1309485..1310729	-	414	13542076	-	TVN1245	-	major facilitator superfamily permease
1246	 37.20	-1	1310918..1311382	+	154	13542077	-	TVN1246	-	transcription regulator (SlyA-related)
1247	 37.50	0	1311805..1312452	-	215	13542078	-	TVN1247	-	30S ribosomal protein S3Ae
1248	 47.26	+1	1313266..1313502	-	78	13542079	-	TVN1248	-	transcription regulator
1249	 45.65	+1	1313513..1313926	-	137	13542080	-	TVN1249	-	hypothetical protein
1250	 41.92	0	1314147..1314728	+	193	13542081	-	TVN1250	-	hypothetical protein
1251	 32.27	-2	1314741..1315115	-	124	13542082	-	TVN1251	-	transcription regulator
1252	 42.13	0	1315211..1316233	+	340	13542083	-	TVN1252	-	translation initiation factor IF-2B subunit alpha
1253	 38.88	0	1316213..1317493	-	426	13542084	-	TVN1253	-	tryptophanyl-tRNA synthetase
1254	 38.63	0	1317774..1319114	+	446	13542085	-	TVN1254	-	trehalose-6-phosphate synthase
1255	 37.38	-1	1319080..1319820	+	246	13542086	-	TVN1255	-	trehalose-6-phosphatase
1256	 37.68	0	1319865..1320830	+	321	13542087	-	TVN1256	-	hypothetical protein
1257	 38.01	0	1320838..1321650	-	270	13542088	-	TVN1257	-	amidohydrolase
1258	 42.37	0	1322048..1322512	-	154	13542089	-	TVN1258	-	NTP pyrophosphohydrolase (mutT-related oxidative damage repair enzyme)
1259	 44.44	+1	1322512..1323006	-	164	13542090	-	TVN1259	-	nucleic-acid-binding protein
1260	 47.74	+1	1323003..1324265	-	420	13542091	-	TVN1260	-	acetyl-CoA acetyltransferase
1261	 40.16	0	1324343..1324987	-	214	13542092	-	TVN1261	-	aspartokinase beta subunit
1262	 44.29	0	1325117..1326649	+	510	13542093	-	TVN1262	-	amino acid transporter
1263	 41.81	0	1326678..1327868	-	396	13542094	-	TVN1263	-	multidrug efflux permease
1264	 41.59	0	1327879..1328544	-	221	13542095	-	TVN1264	-	hypothetical protein
1265	 41.88	0	1328580..1328930	-	116	13542096	-	TVN1265	-	transcription regulator
1266	 41.37	0	1328971..1330911	-	646	13542097	-	TVN1266	-	Acyl-coenzyme A synthetase
1267	 35.93	-1	1330971..1331393	-	140	13542098	-	TVN1267	-	hypothetical protein
1268	 44.78	+1	1331499..1333358	-	619	13542099	-	TVN1268	-	Acyl-coenzyme A synthetase
1269	 43.26	0	1333406..1334554	-	382	13542100	-	TVN1269	-	isovaleryl-CoA dehydrogenase
1270	 39.34	0	1334636..1335184	-	182	13542101	-	TVN1270	-	molybdopterin-guanine dinucleotide biosynthesis protein
1271	 42.42	0	1335287..1336408	-	373	13542102	-	TVN1271	-	saccharopine dehydrogenase
1272	 42.20	0	1336486..1336812	-	108	13542103	-	TVN1272	-	transcription regulator
1273	 39.22	0	1336820..1337515	-	231	13542104	-	TVN1273	-	endonuclease III-like protein
1274	 43.37	0	1337512..1338747	-	411	13542105	-	TVN1274	-	translation initiation factor IF-2 subunit gamma
1275	 43.41	0	1338731..1339117	-	128	13542106	-	TVN1275	-	30S ribosomal protein S6e
1276	 44.00	0	1339245..1340828	+	527	13542107	-	TVN1276	-	O-sialoglycoprotein endopeptidase/protein kinase
1277	 36.74	-1	1340821..1341378	+	185	13542108	-	TVN1277	-	xanthosine triphosphate pyrophosphatase-like protein
1278	 43.82	0	1341660..1342946	+	428	13542109	-	TVN1278	-	dehydrogenase (flavoprotein)
1279	 39.56	0	1342957..1343229	+	90	13542110	-	TVN1279	-	ferredoxin-like protein
1280	 43.46	0	1343254..1344033	+	259	13542111	-	TVN1280	-	electron transfer flavoprotein subunit beta
1281	 45.43	+1	1344030..1345079	+	349	13542112	-	TVN1281	-	electron transfer flavoprotein subunit alpha
1282	 43.02	0	1345067..1347049	-	660	13542113	thrS	TVN1282	-	threonyl-tRNA synthetase
1283	 40.96	0	1347387..1348697	-	436	13542114	-	TVN1283	-	NAD-dependent aldehyde dehydrogenase
1284	 43.86	0	1348694..1349995	-	433	13542115	-	TVN1284	-	alcohol dehydrogenase IV
1285	 44.73	+1	1350001..1350816	-	271	13542116	-	TVN1285	-	Zn-dependent hydrolase (AttM-related)
1286	 39.80	0	1351159..1351854	-	231	13542117	-	TVN1286	-	hypothetical protein
1287	 40.34	0	1351870..1352511	-	213	13542118	-	TVN1287	-	triosephosphate isomerase
1288	 47.37	+1	1352610..1353122	-	170	13542119	-	TVN1288	-	deoxycytidylate deaminase
1289	 34.04	-1	1353176..1353460	-	94	13542120	-	TVN1289	-	hypothetical protein
1290	 45.03	+1	1353500..1354918	-	472	13542121	-	TVN1290	-	hypothetical protein
1291	 40.45	0	1355049..1355933	-	294	13542122	hemH	TVN1291	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1292	 39.34	0	1356017..1357015	+	332	13542123	hemE	TVN1292	-	uroporphyrinogen decarboxylase
1293	 41.53	0	1357012..1357926	+	304	13542124	hemH	TVN1293	-	ferrochelatase
1294	 40.72	0	1358012..1358959	+	315	13542125	-	TVN1294	-	dolichol kinase
1295	 41.00	0	1359071..1359370	-	99	13542126	-	TVN1295	-	hypothetical protein
1296	 37.76	0	1359439..1359732	-	97	13542127	-	TVN1296	-	hypothetical protein
1297	 45.65	+1	1359744..1360214	-	156	13542128	-	TVN1297	-	phosphoribosylcarboxyaminoimidazole carboxylase catalytic subunit
1298	 40.70	0	1360240..1361325	-	361	13542129	-	TVN1298	-	translation factor (SUA5-related)
1299	 41.79	0	1361435..1363786	+	783	13542130	-	TVN1299	-	aminopeptidase N
1300	 43.57	0	1363800..1365323	-	507	13542131	-	TVN1300	-	Na+/panthothenate symporter permease
1301	 40.80	0	1365320..1365520	-	66	13542132	-	TVN1301	-	hypothetical protein
1302	 40.10	0	1365594..1367885	-	763	13542133	-	TVN1302	-	Alpha-glucosidase
1303	 39.79	0	1368057..1369187	-	376	13542134	-	TVN1303	-	RNA helicase
1304	 46.10	+1	1369451..1370641	+	396	13542135	-	TVN1304	-	acetyl-CoA acetyltransferase
1305	 41.98	0	1370643..1371752	+	369	13542136	-	TVN1305	-	Acyl-CoA dehydrogenase
1306	 42.56	0	1371752..1372228	+	158	13542137	-	TVN1306	-	Acyl-CoA dehydrogenase
1307	 43.73	0	1372249..1372758	+	169	13542138	-	TVN1307	-	Acyl-CoA dehydrogenase
1308	 42.79	0	1373162..1373563	-	133	13542139	-	TVN1308	-	hypothetical protein
1309	 42.89	0	1373719..1375308	+	529	13542140	-	TVN1309	-	acyl-CoA synthetase
1310	 43.74	0	1375310..1377289	-	659	13542141	-	TVN1310	-	3-hydroxyacyl-CoA dehydrogenase
1311	 36.09	-1	1377296..1377622	-	108	13542142	-	TVN1311	-	sterol carrier protein
1312	 40.68	0	1377730..1378260	-	176	13542143	-	TVN1312	-	CBS domain-containing protein
1313	 45.74	+1	1378444..1380120	+	558	13542144	-	TVN1313	-	Fe-S oxidoreductase
1314	 42.79	0	1380154..1381158	+	334	13542145	-	TVN1314	-	oxidoreductase
1315	 42.67	0	1381191..1383032	-	613	13542146	-	TVN1315	-	hypothetical protein
1316	 41.55	0	1383228..1384310	+	360	13542147	aroB	TVN1316	-	3-dehydroquinate synthase
1317	 39.55	0	1384297..1385100	+	267	13542148	aroE	TVN1317	-	shikimate 5-dehydrogenase
1318	 42.87	0	1385087..1385893	+	268	13542149	-	TVN1318	-	shikimate kinase
1319	 41.61	0	1385883..1387115	+	410	13542150	-	TVN1319	-	3-phosphoshikimate 1-carboxyvinyltransferase
1320	 39.80	0	1387144..1388781	+	545	13542151	argS	TVN1320	-	arginyl-tRNA synthetase
1321	 39.69	0	1388786..1391662	-	958	13542152	-	TVN1321	-	hypothetical protein
1322	 44.11	0	1391663..1393063	-	466	13542153	-	TVN1322	-	hypothetical protein
1323	 37.35	-1	1393485..1393808	+	107	13542154	-	TVN1323	-	hypothetical protein
1324	 40.64	0	1393839..1394372	+	177	13542155	-	TVN1324	-	acetyltransferase
1325	 36.90	-1	1394373..1394708	-	111	13542156	-	TVN1325	-	hypothetical protein
1326	 39.38	0	1395016..1395957	+	313	13542157	-	TVN1326	-	Fe-S oxidoreductase
1327	 34.52	-1	1395987..1396322	-	111	13542158	-	TVN1327	-	hypothetical protein
1328	 41.70	0	1396300..1397733	-	477	13542159	-	TVN1328	-	ABC-type peptide transporter, ATPase component
1329	 38.88	0	1397733..1399301	-	522	13542160	-	TVN1329	-	ABC-type peptide transport system, ATPase component
1330	 40.83	0	1399304..1400263	-	319	13542161	-	TVN1330	-	ABC-type peptide transporter, permease component
1331	 41.85	0	1400273..1401364	-	363	13542162	-	TVN1331	-	ABC-type peptide transport system, permease component
1332	 42.42	0	1401500..1404382	-	960	13542163	-	TVN1332	-	ABC-type peptide transport system, solute-binding component
1333	 35.96	-1	1404760..1405254	+	164	13542164	-	TVN1333	-	hypothetical protein
1334	 43.16	0	1405258..1406112	-	284	13542165	-	TVN1334	-	2-oxoacid ferredoxin oxidoreductase subunit beta
1335	 42.21	0	1406112..1407869	-	585	13542166	-	TVN1335	-	2-oxoacid--ferredoxin oxidoreductase, alpha subunit
1336	 41.27	0	1408056..1409429	+	457	13542167	aspA	TVN1336	-	aspartate ammonia-lyase
40.87	MEAN

3.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.