IslandPathversion 1.0

IslandPath Analysis: Thermoplasma volcanium GSS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.87 STD DEV: 3.44
Thermoplasma volcanium GSS1, complete genome - 1..1584804
1499 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1191	 35.28	-1	1247883..1248551	+	222	13542022	-	TVN1191	-	ribosome biogenesis protein
1192	 28.12	-2	1248764..1249051	-	95	13542023	-	TVN1192	-	hypothetical protein
1193	 35.40	-1	1249252..1249542	-	96	13542024	-	TVN1193	-	hypothetical protein
1194	 38.65	0	1250055..1251221	-	388	13542025	-	TVN1194	-	galactonate dehydratase
1195	 41.74	0	1252494..1253183	+	229	13542026	-	TVN1195	-	serine/threonine protein phosphatase
1196	 38.39	0	1253697..1254131	+	144	13542027	-	TVN1196	-	transcription regulator
1197	 40.73	0	1255890..1257431	-	513	13542028	-	TVN1197	-	benzoylformate decarboxylase
1198	 40.75	0	1257432..1258361	-	309	13542029	-	TVN1198	-	2-hydroxyacid dehydrogenase
1199	 38.43	0	1258483..1258953	+	156	13542030	-	TVN1199	-	hypothetical protein
1200	 42.14	0	1258977..1261565	+	862	13542031	-	TVN1200	-	penicillin amidase related protein
1201	 41.37	0	1261595..1261930	+	111	13542032	-	TVN1201	-	hypothetical protein
1202	 36.49	-1	1262323..1262670	-	115	13542033	-	TVN1202	-	hypothetical protein
1203	 36.51	-1	1262718..1263221	-	167	13542034	-	TVN1203	-	hypothetical protein
1204	 39.73	0	1263637..1265169	+	510	13542035	-	TVN1204	-	TPR repeat-containing protein
1205	 38.89	0	1265213..1266004	+	263	13542036	-	TVN1205	-	hypothetical protein
1206	 41.99	0	1266214..1267449	+	411	13542037	-	TVN1206	-	NAD(FAD)-dependent dehydrogenase
1207	 34.02	-1	1267452..1267742	+	96	13542038	-	TVN1207	-	hypothetical protein
1208	 38.13	0	1267907..1268344	+	145	13542039	rps15p	TVN1208	-	30S ribosomal protein S15P
1209	 40.39	0	1268341..1269687	+	448	13542040	-	TVN1209	-	single-stranded DNA-specific exonuclease
1210	 37.88	0	1269764..1270423	+	219	13542041	-	TVN1210	-	hypothetical protein
1211	 38.97	0	1270428..1271207	-	259	13542042	-	TVN1211	-	hypothetical protein
1212	 38.65	0	1271204..1277434	-	2076	13542043	-	TVN1212	-	hypothetical protein
1213	 34.93	-1	1277788..1278162	+	124	13542044	-	TVN1213	-	prefoldin subunit beta
1214	 38.13	0	1278159..1279013	+	284	13542045	-	TVN1214	-	GTP cyclohydrolase
1215	 38.00	0	1279046..1279474	-	142	13542046	-	TVN1215	-	cytidylyltransferase
1216	 36.42	-1	1279532..1279984	+	150	13542047	-	TVN1216	-	acetyltransferase
1217	 40.79	0	1280038..1280493	+	151	13542048	-	TVN1217	-	HIT (histidine triad) family protein
1218	 40.70	0	1280648..1281244	+	198	13542049	-	TVN1218	-	orotate phosphoribosyltransferase
1219	 40.87	0	1281403..1282914	+	503	13542050	lysK	TVN1219	-	lysyl-tRNA synthetase
1220	 38.97	0	1282981..1284612	+	543	13542051	-	TVN1220	-	methionyl-tRNA synthetase
1221	 40.52	0	1284768..1285073	+	101	13542052	-	TVN1221	-	cationic amino acid transporter
1222	 41.81	0	1285178..1286428	-	416	13542053	-	TVN1222	-	transposase
1223	 38.17	0	1286418..1286996	-	192	13542054	-	TVN1223	-	site-specific integrase-resolvase
1224	 40.57	0	1287157..1288110	+	317	13542055	-	TVN1224	-	amino acid transporter
1225	 32.80	-2	1288113..1288298	-	61	13542056	rpoK	TVN1225	-	DNA-directed RNA polymerase subunit K
1226	 35.84	-1	1288366..1288803	-	145	13542057	-	TVN1226	-	hypothetical protein
1227	 44.10	0	1288826..1289884	-	352	13542058	egsA	TVN1227	-	NAD(P)-dependent glycerol-1-phosphate dehydrogenase
1228	 41.26	0	1289977..1290846	-	289	13542059	-	TVN1228	-	dihydrodipicolinate synthetase
1229	 41.13	0	1290876..1291850	-	324	13542060	-	TVN1229	-	hypothetical protein
1230	 42.62	0	1291978..1292892	+	304	13542061	-	TVN1230	-	ribonuclease Z
1231	 36.27	-1	1292898..1293305	-	135	13542062	-	TVN1231	-	hypothetical protein
1232	 39.16	0	1293497..1294303	+	268	13542063	-	TVN1232	-	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
1233	 41.69	0	1294312..1296393	-	693	13542064	-	TVN1233	-	Acyl-CoA synthetase (NDP forming)
1234	 38.61	0	1296716..1297321	-	201	13542065	-	TVN1234	-	hypothetical protein
1235	 35.83	-1	1297667..1298026	+	119	13542066	-	TVN1235	-	small primase-like protein
1236	 40.64	0	1298098..1298535	+	145	13542067	-	TVN1236	-	single-strand DNA-binding protein
1237	 40.69	0	1298537..1300303	-	588	13542068	-	TVN1237	-	ATP-dependent DNA ligase
1238	 43.74	0	1300339..1302039	-	566	13542069	-	TVN1238	-	amino acid transporter
1239	 43.84	0	1302262..1304136	+	624	13542070	-	TVN1239	-	aldehyde:ferredoxin oxidoreductase
1240	 41.58	0	1304145..1306205	-	686	13542071	-	TVN1240	-	cation transport ATPase
1241	 34.78	-1	1306291..1306428	+	45	13542072	-	TVN1241	-	hypothetical protein
1242	 38.71	0	1306495..1306680	+	61	13542073	-	TVN1242	-	metal-binding protein
1243	 40.80	0	1306677..1307855	-	392	13542074	-	TVN1243	-	nicotinate phosphoribosyltransferase
1244	 38.75	0	1307912..1309276	-	454	13542075	cysS	TVN1244	-	cysteinyl-tRNA synthetase
1245	 39.12	0	1309485..1310729	-	414	13542076	-	TVN1245	-	major facilitator superfamily permease
1246	 37.20	-1	1310918..1311382	+	154	13542077	-	TVN1246	-	transcription regulator (SlyA-related)
1247	 37.50	0	1311805..1312452	-	215	13542078	-	TVN1247	-	30S ribosomal protein S3Ae
1248	 47.26	+1	1313266..1313502	-	78	13542079	-	TVN1248	-	transcription regulator
1249	 45.65	+1	1313513..1313926	-	137	13542080	-	TVN1249	-	hypothetical protein
1250	 41.92	0	1314147..1314728	+	193	13542081	-	TVN1250	-	hypothetical protein
1251	 32.27	-2	1314741..1315115	-	124	13542082	-	TVN1251	-	transcription regulator
1252	 42.13	0	1315211..1316233	+	340	13542083	-	TVN1252	-	translation initiation factor IF-2B subunit alpha
1253	 38.88	0	1316213..1317493	-	426	13542084	-	TVN1253	-	tryptophanyl-tRNA synthetase
1254	 38.63	0	1317774..1319114	+	446	13542085	-	TVN1254	-	trehalose-6-phosphate synthase
1255	 37.38	-1	1319080..1319820	+	246	13542086	-	TVN1255	-	trehalose-6-phosphatase
1256	 37.68	0	1319865..1320830	+	321	13542087	-	TVN1256	-	hypothetical protein
1257	 38.01	0	1320838..1321650	-	270	13542088	-	TVN1257	-	amidohydrolase
1258	 42.37	0	1322048..1322512	-	154	13542089	-	TVN1258	-	NTP pyrophosphohydrolase (mutT-related oxidative damage repair enzyme)
1259	 44.44	+1	1322512..1323006	-	164	13542090	-	TVN1259	-	nucleic-acid-binding protein
1260	 47.74	+1	1323003..1324265	-	420	13542091	-	TVN1260	-	acetyl-CoA acetyltransferase
1261	 40.16	0	1324343..1324987	-	214	13542092	-	TVN1261	-	aspartokinase beta subunit
1262	 44.29	0	1325117..1326649	+	510	13542093	-	TVN1262	-	amino acid transporter
1263	 41.81	0	1326678..1327868	-	396	13542094	-	TVN1263	-	multidrug efflux permease
1264	 41.59	0	1327879..1328544	-	221	13542095	-	TVN1264	-	hypothetical protein
1265	 41.88	0	1328580..1328930	-	116	13542096	-	TVN1265	-	transcription regulator
1266	 41.37	0	1328971..1330911	-	646	13542097	-	TVN1266	-	Acyl-coenzyme A synthetase
1267	 35.93	-1	1330971..1331393	-	140	13542098	-	TVN1267	-	hypothetical protein
1268	 44.78	+1	1331499..1333358	-	619	13542099	-	TVN1268	-	Acyl-coenzyme A synthetase
1269	 43.26	0	1333406..1334554	-	382	13542100	-	TVN1269	-	isovaleryl-CoA dehydrogenase
1270	 39.34	0	1334636..1335184	-	182	13542101	-	TVN1270	-	molybdopterin-guanine dinucleotide biosynthesis protein
1271	 42.42	0	1335287..1336408	-	373	13542102	-	TVN1271	-	saccharopine dehydrogenase
1272	 42.20	0	1336486..1336812	-	108	13542103	-	TVN1272	-	transcription regulator
1273	 39.22	0	1336820..1337515	-	231	13542104	-	TVN1273	-	endonuclease III-like protein
1274	 43.37	0	1337512..1338747	-	411	13542105	-	TVN1274	-	translation initiation factor IF-2 subunit gamma
1275	 43.41	0	1338731..1339117	-	128	13542106	-	TVN1275	-	30S ribosomal protein S6e
1276	 44.00	0	1339245..1340828	+	527	13542107	-	TVN1276	-	O-sialoglycoprotein endopeptidase/protein kinase
1277	 36.74	-1	1340821..1341378	+	185	13542108	-	TVN1277	-	xanthosine triphosphate pyrophosphatase-like protein
1278	 43.82	0	1341660..1342946	+	428	13542109	-	TVN1278	-	dehydrogenase (flavoprotein)
1279	 39.56	0	1342957..1343229	+	90	13542110	-	TVN1279	-	ferredoxin-like protein
1280	 43.46	0	1343254..1344033	+	259	13542111	-	TVN1280	-	electron transfer flavoprotein subunit beta
1281	 45.43	+1	1344030..1345079	+	349	13542112	-	TVN1281	-	electron transfer flavoprotein subunit alpha
1282	 43.02	0	1345067..1347049	-	660	13542113	thrS	TVN1282	-	threonyl-tRNA synthetase
1283	 40.96	0	1347387..1348697	-	436	13542114	-	TVN1283	-	NAD-dependent aldehyde dehydrogenase
1284	 43.86	0	1348694..1349995	-	433	13542115	-	TVN1284	-	alcohol dehydrogenase IV
1285	 44.73	+1	1350001..1350816	-	271	13542116	-	TVN1285	-	Zn-dependent hydrolase (AttM-related)
1286	 39.80	0	1351159..1351854	-	231	13542117	-	TVN1286	-	hypothetical protein
1287	 40.34	0	1351870..1352511	-	213	13542118	-	TVN1287	-	triosephosphate isomerase
1288	 47.37	+1	1352610..1353122	-	170	13542119	-	TVN1288	-	deoxycytidylate deaminase
1289	 34.04	-1	1353176..1353460	-	94	13542120	-	TVN1289	-	hypothetical protein
1290	 45.03	+1	1353500..1354918	-	472	13542121	-	TVN1290	-	hypothetical protein
40.87	MEAN

3.44	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.