IslandPath Analysis: Thermoplasma volcanium GSS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.87   STD DEV: 3.44
Thermoplasma volcanium GSS1, complete genome - 1..1584804
1499 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1155	 42.07	0	1209022..1210005	+	327	13541986	-	TVN1155	-	permease
1156	 38.85	0	1210002..1210382	+	126	13541987	-	TVN1156	-	hypothetical protein
1157	 44.95	+1	1210440..1211894	+	484	13541988	-	TVN1157	-	putative oxidoreductase
1158	 45.62	+1	1212110..1213330	+	406	13541989	-	TVN1158	-	cofactor-independent phosphoglycerate mutase
1159	 42.54	0	1213430..1213972	+	180	13541990	-	TVN1159	-	hypothetical protein
1160	 44.10	0	1213986..1215350	-	454	13541991	-	TVN1160	-	proline/betaine transport permease
1161	 41.92	0	1215416..1216615	-	399	13541992	-	TVN1161	-	carnitine dehydratase
1162	 40.28	0	1216673..1217104	-	143	13541993	-	TVN1162	-	transcription regulator (SlyA-related)
1163	 44.90	+1	1217101..1218864	-	587	13541994	-	TVN1163	-	multidrug efflux permease
1164	 34.70	-1	1218962..1219474	+	170	13541995	-	TVN1164	-	hypothetical protein
1165	 39.14	0	1219531..1219926	+	131	13541996	-	TVN1165	-	hypothetical protein
1166	 38.79	0	1219960..1220490	-	176	13541997	-	TVN1166	-	secreted endonuclease distantly related to Holliday junction resolvase
1167	 40.14	0	1220593..1221180	+	195	13541998	-	TVN1167	-	alpha/beta superfamily hydrolase
1168	 44.44	+1	1221182..1222441	-	419	13541999	-	TVN1168	-	hydroxymethylglutaryl-CoA reductase
1169	 40.16	0	1222485..1223699	-	404	13542000	-	TVN1169	-	multidrug efflux permease
1170	 42.27	0	1223864..1224769	+	301	13542001	-	TVN1170	-	dihydroorotate dehydrogenase 1B
1171	 41.97	0	1224766..1225518	+	250	13542002	-	TVN1171	-	dihydroorotate dehydrogenase electron transfer subunit
1172	 37.45	0	1225570..1228122	+	850	13542003	-	TVN1172	-	TPR repeat-containing protein
1173	 38.18	0	1228061..1228927	-	288	13542004	-	TVN1173	-	hypothetical protein
1174	 41.50	0	1228987..1229292	-	101	13542005	-	TVN1174	-	hypothetical protein
1175	 42.88	0	1230030..1231223	+	397	13542006	-	TVN1175	-	Acyl-CoA dehydrogenase
1176	 40.89	0	1231330..1231911	+	193	13542007	-	TVN1176	-	putative RNA-processing protein
1177	 37.83	0	1232029..1232784	-	251	13542008	-	TVN1177	-	serine/threonine protein kinase
1178	 41.13	0	1232812..1233183	-	123	13542009	-	TVN1178	-	translation initiation factor IF-1A
1179	 37.76	0	1233261..1233689	-	142	13542010	nusA	TVN1179	-	transcription elongation factor NusA-like protein
1180	 42.67	0	1233699..1235240	-	513	13542011	-	TVN1180	-	DNA-directed RNA polymerase subunit A''
1181	 44.19	0	1235237..1237897	-	886	13542012	-	TVN1181	-	DNA-directed RNA polymerase subunit alpha
1182	 45.43	+1	1237894..1241481	-	1195	13542013	-	TVN1182	-	DNA-directed RNA polymerase subunit beta
1183	 38.26	0	1241478..1241741	-	87	13542014	rpoH	TVN1183	-	DNA-directed RNA polymerase subunit H
1184	 40.56	0	1241900..1242715	-	271	13542015	-	TVN1184	-	hypothetical protein
1185	 40.48	0	1242712..1243788	-	358	13542016	-	TVN1185	-	replication factor A
1186	 34.62	-1	1243935..1244633	+	232	13542017	-	TVN1186	-	transcription regulator
1187	 40.86	0	1244656..1245837	-	393	13542018	-	TVN1187	-	transposase
1188	 28.09	-2	1245857..1246180	-	107	13542019	-	TVN1188	-	transcription regulator
1189	 38.63	0	1246465..1246974	-	169	13542020	-	TVN1189	-	inorganic pyrophosphatase
1190	 38.58	0	1247214..1247804	-	196	13542021	-	TVN1190	-	ATP:corrinoid adenosyltransferase
1191	 35.28	-1	1247883..1248551	+	222	13542022	-	TVN1191	-	ribosome biogenesis protein
1192	 28.12	-2	1248764..1249051	-	95	13542023	-	TVN1192	-	hypothetical protein
1193	 35.40	-1	1249252..1249542	-	96	13542024	-	TVN1193	-	hypothetical protein
1194	 38.65	0	1250055..1251221	-	388	13542025	-	TVN1194	-	galactonate dehydratase
1195	 41.74	0	1252494..1253183	+	229	13542026	-	TVN1195	-	serine/threonine protein phosphatase
1196	 38.39	0	1253697..1254131	+	144	13542027	-	TVN1196	-	transcription regulator
1197	 40.73	0	1255890..1257431	-	513	13542028	-	TVN1197	-	benzoylformate decarboxylase
1198	 40.75	0	1257432..1258361	-	309	13542029	-	TVN1198	-	2-hydroxyacid dehydrogenase
1199	 38.43	0	1258483..1258953	+	156	13542030	-	TVN1199	-	hypothetical protein
1200	 42.14	0	1258977..1261565	+	862	13542031	-	TVN1200	-	penicillin amidase related protein
1201	 41.37	0	1261595..1261930	+	111	13542032	-	TVN1201	-	hypothetical protein
1202	 36.49	-1	1262323..1262670	-	115	13542033	-	TVN1202	-	hypothetical protein
1203	 36.51	-1	1262718..1263221	-	167	13542034	-	TVN1203	-	hypothetical protein
1204	 39.73	0	1263637..1265169	+	510	13542035	-	TVN1204	-	TPR repeat-containing protein
1205	 38.89	0	1265213..1266004	+	263	13542036	-	TVN1205	-	hypothetical protein
1206	 41.99	0	1266214..1267449	+	411	13542037	-	TVN1206	-	NAD(FAD)-dependent dehydrogenase
1207	 34.02	-1	1267452..1267742	+	96	13542038	-	TVN1207	-	hypothetical protein
1208	 38.13	0	1267907..1268344	+	145	13542039	rps15p	TVN1208	-	30S ribosomal protein S15P
1209	 40.39	0	1268341..1269687	+	448	13542040	-	TVN1209	-	single-stranded DNA-specific exonuclease
1210	 37.88	0	1269764..1270423	+	219	13542041	-	TVN1210	-	hypothetical protein
1211	 38.97	0	1270428..1271207	-	259	13542042	-	TVN1211	-	hypothetical protein
1212	 38.65	0	1271204..1277434	-	2076	13542043	-	TVN1212	-	hypothetical protein
1213	 34.93	-1	1277788..1278162	+	124	13542044	-	TVN1213	-	prefoldin subunit beta
1214	 38.13	0	1278159..1279013	+	284	13542045	-	TVN1214	-	GTP cyclohydrolase
1215	 38.00	0	1279046..1279474	-	142	13542046	-	TVN1215	-	cytidylyltransferase
1216	 36.42	-1	1279532..1279984	+	150	13542047	-	TVN1216	-	acetyltransferase
1217	 40.79	0	1280038..1280493	+	151	13542048	-	TVN1217	-	HIT (histidine triad) family protein
1218	 40.70	0	1280648..1281244	+	198	13542049	-	TVN1218	-	orotate phosphoribosyltransferase
1219	 40.87	0	1281403..1282914	+	503	13542050	lysK	TVN1219	-	lysyl-tRNA synthetase
1220	 38.97	0	1282981..1284612	+	543	13542051	-	TVN1220	-	methionyl-tRNA synthetase
1221	 40.52	0	1284768..1285073	+	101	13542052	-	TVN1221	-	cationic amino acid transporter
1222	 41.81	0	1285178..1286428	-	416	13542053	-	TVN1222	-	transposase
1223	 38.17	0	1286418..1286996	-	192	13542054	-	TVN1223	-	site-specific integrase-resolvase
1224	 40.57	0	1287157..1288110	+	317	13542055	-	TVN1224	-	amino acid transporter
1225	 32.80	-2	1288113..1288298	-	61	13542056	rpoK	TVN1225	-	DNA-directed RNA polymerase subunit K
1226	 35.84	-1	1288366..1288803	-	145	13542057	-	TVN1226	-	hypothetical protein
1227	 44.10	0	1288826..1289884	-	352	13542058	egsA	TVN1227	-	NAD(P)-dependent glycerol-1-phosphate dehydrogenase
1228	 41.26	0	1289977..1290846	-	289	13542059	-	TVN1228	-	dihydrodipicolinate synthetase
1229	 41.13	0	1290876..1291850	-	324	13542060	-	TVN1229	-	hypothetical protein
1230	 42.62	0	1291978..1292892	+	304	13542061	-	TVN1230	-	ribonuclease Z
1231	 36.27	-1	1292898..1293305	-	135	13542062	-	TVN1231	-	hypothetical protein
1232	 39.16	0	1293497..1294303	+	268	13542063	-	TVN1232	-	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
1233	 41.69	0	1294312..1296393	-	693	13542064	-	TVN1233	-	Acyl-CoA synthetase (NDP forming)
1234	 38.61	0	1296716..1297321	-	201	13542065	-	TVN1234	-	hypothetical protein
1235	 35.83	-1	1297667..1298026	+	119	13542066	-	TVN1235	-	small primase-like protein
1236	 40.64	0	1298098..1298535	+	145	13542067	-	TVN1236	-	single-strand DNA-binding protein
1237	 40.69	0	1298537..1300303	-	588	13542068	-	TVN1237	-	ATP-dependent DNA ligase
1238	 43.74	0	1300339..1302039	-	566	13542069	-	TVN1238	-	amino acid transporter
1239	 43.84	0	1302262..1304136	+	624	13542070	-	TVN1239	-	aldehyde:ferredoxin oxidoreductase
1240	 41.58	0	1304145..1306205	-	686	13542071	-	TVN1240	-	cation transport ATPase
1241	 34.78	-1	1306291..1306428	+	45	13542072	-	TVN1241	-	hypothetical protein
1242	 38.71	0	1306495..1306680	+	61	13542073	-	TVN1242	-	metal-binding protein
1243	 40.80	0	1306677..1307855	-	392	13542074	-	TVN1243	-	nicotinate phosphoribosyltransferase
1244	 38.75	0	1307912..1309276	-	454	13542075	cysS	TVN1244	-	cysteinyl-tRNA synthetase
1245	 39.12	0	1309485..1310729	-	414	13542076	-	TVN1245	-	major facilitator superfamily permease
1246	 37.20	-1	1310918..1311382	+	154	13542077	-	TVN1246	-	transcription regulator (SlyA-related)
1247	 37.50	0	1311805..1312452	-	215	13542078	-	TVN1247	-	30S ribosomal protein S3Ae
1248	 47.26	+1	1313266..1313502	-	78	13542079	-	TVN1248	-	transcription regulator
1249	 45.65	+1	1313513..1313926	-	137	13542080	-	TVN1249	-	hypothetical protein
1250	 41.92	0	1314147..1314728	+	193	13542081	-	TVN1250	-	hypothetical protein
1251	 32.27	-2	1314741..1315115	-	124	13542082	-	TVN1251	-	transcription regulator
1252	 42.13	0	1315211..1316233	+	340	13542083	-	TVN1252	-	translation initiation factor IF-2B subunit alpha
1253	 38.88	0	1316213..1317493	-	426	13542084	-	TVN1253	-	tryptophanyl-tRNA synthetase
1254	 38.63	0	1317774..1319114	+	446	13542085	-	TVN1254	-	trehalose-6-phosphate synthase
40.87	MEAN

3.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.