IslandPath Analysis: Thermoplasma volcanium GSS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.87   STD DEV: 3.44
Thermoplasma volcanium GSS1, complete genome - 1..1584804
1499 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1069	 38.36	0	1126727..1128259	-	510	13541900	-	TVN1069	-	queuine tRNA-ribosyltransferase
1070	 40.08	0	1128771..1129511	-	246	13541901	truA	TVN1070	-	tRNA pseudouridine synthase A
1071	 42.58	0	1129508..1130524	-	338	13541902	-	TVN1071	-	tRNA 2'-O-methylase
1072	 40.04	0	1130521..1131027	-	168	13541903	-	TVN1072	-	hypothetical protein
1073	 38.89	0	1131371..1131532	-	53	13541904	-	TVN1073	-	hypothetical protein
1074	 37.91	0	1131795..1132799	+	334	13541905	-	TVN1074	-	methyltransferase
1075	 40.74	0	1133061..1133276	-	71	13541906	-	TVN1075	-	small nuclear ribonucleoprotein (snRNP)-like protein
1076	 33.33	-2	1133289..1133450	-	53	13541907	-	TVN1076	-	hypothetical protein
1077	 41.05	0	1133467..1134075	-	202	13541908	-	TVN1077	-	exosome complex RNA-binding protein Csl4
1078	 38.61	0	1134366..1135520	+	384	13541909	-	TVN1078	-	major facilitator superfamily permease
1079	 42.07	0	1135544..1136722	-	392	13541910	-	TVN1079	-	succinyl-diaminopimelate desuccinylase
1080	 39.66	0	1136823..1137407	+	194	13541911	-	TVN1080	-	hypothetical protein
1081	 40.68	0	1137473..1138861	+	462	13541912	-	TVN1081	-	prolyl-tRNA synthetase
1082	 38.81	0	1138861..1139499	+	212	13541913	-	TVN1082	-	phosphoserine phosphatase
1083	 43.45	0	1139885..1140823	-	312	13541914	tfb	TVN1083	-	transcription initiation factor IIB
1084	 39.61	0	1140833..1141039	-	68	13541915	-	TVN1084	-	H/ACA RNA-protein complex component Gar1
1085	 36.50	-1	1141285..1142262	+	325	13541916	-	TVN1085	-	GTPase
1086	 41.53	0	1142243..1143889	+	548	13541917	gltX	TVN1086	-	glutamyl-tRNA synthetase
1087	 34.12	-1	1143890..1144144	-	84	13541918	-	TVN1087	-	hypothetical protein
1088	 43.02	0	1144148..1144756	-	202	13541919	-	TVN1088	-	GMP synthase subunit A
1089	 43.84	0	1144753..1145694	-	313	13541920	tfb	TVN1089	-	transcription initiation factor IIB
1090	 39.16	0	1146079..1147365	+	428	13541921	aspC	TVN1090	-	aspartyl-tRNA synthetase
1091	 38.10	0	1147653..1148597	+	314	13541922	-	TVN1091	-	3-hydroxyacyl-CoA dehydrogenase
1092	 42.36	0	1148602..1148889	-	95	13541923	-	TVN1092	-	hypothetical protein
1093	 39.81	0	1149034..1149465	-	143	13541924	-	TVN1093	-	transcription factor
1094	 40.51	0	1149537..1150205	+	222	13541925	-	TVN1094	-	fibrillarin
1095	 40.83	0	1150252..1150731	+	159	13541926	-	TVN1095	-	6-pyruvoyl-tetrahydropterin synthase
1096	 40.77	0	1150733..1151458	+	241	13541927	-	TVN1096	-	ATPase
1097	 43.25	0	1151701..1152678	-	325	13541928	-	TVN1097	-	malate dehydrogenase
1098	 39.08	0	1152945..1154372	+	475	13541929	-	TVN1098	-	ATPase
1099	 42.48	0	1154375..1154986	-	203	13541930	-	TVN1099	-	putative peroxiredoxin
1100	 43.17	0	1155064..1156029	-	321	13541931	-	TVN1100	-	delta-aminolevulinic acid dehydratase
1101	 38.14	0	1156112..1156444	+	110	13541932	-	TVN1101	-	hypothetical protein
1102	 38.62	0	1156448..1156693	-	81	13541933	-	TVN1102	-	hypothetical protein
1103	 39.64	0	1156690..1157022	-	110	13541934	-	TVN1103	-	hypothetical protein
1104	 39.45	0	1157047..1158468	-	473	13541935	-	TVN1104	-	NADH dehydrogenase subunit N
1105	 40.17	0	1158465..1160015	-	516	13541936	-	TVN1105	-	NADH dehydrogenase subunit M
1106	 42.90	0	1160017..1161072	-	351	13541937	-	TVN1106	-	NADH:ubiquinone oxidoreductase subunit 5 (chain L)
1107	 42.74	0	1161017..1162015	-	332	13541938	-	TVN1107	-	NADH:ubiquinone oxidoreductase subunit 5 (chain L)
1108	 39.10	0	1162018..1162329	-	103	13541939	-	TVN1108	-	NADH dehydrogenase subunit K
1109	 38.81	0	1162330..1162548	-	72	13541940	-	TVN1109	-	NADH dehydrogenase subunit J
1110	 34.94	-1	1162541..1162789	-	82	13541941	-	TVN1110	-	NADH dehydrogenase subunit J
1111	 39.57	0	1162786..1163250	-	154	13541942	-	TVN1111	-	NADH dehydrogenase subunit I
1112	 38.90	0	1163214..1164254	-	346	13541943	-	TVN1112	-	NADH dehydrogenase subunit H
1113	 43.03	0	1164251..1165354	-	367	13541944	-	TVN1113	-	NADH dehydrogenase subunit D
1114	 42.76	0	1165354..1165809	-	151	13541945	-	TVN1114	-	NADH dehydrogenase subunit C
1115	 44.09	0	1165809..1166282	-	157	13541946	-	TVN1115	-	NADH dehydrogenase subunit B
1116	 40.13	0	1166270..1166725	-	151	13541947	-	TVN1116	-	NADH dehydrogenase subunit A
1117	 39.57	0	1166951..1168747	-	598	13541948	-	TVN1117	-	glutamyl-tRNA(Gln) amidotransferase subunit E
1118	 39.89	0	1168744..1169964	-	406	13541949	-	TVN1118	-	glutamyl-tRNA(Gln) amidotransferase subunit D
1119	 37.21	-1	1170047..1170820	+	257	13541950	-	TVN1119	-	hypothetical protein
1120	 42.60	0	1170798..1171952	-	384	13541951	-	TVN1120	-	Acyl-CoA dehydrogenase
1121	 38.64	0	1172230..1173228	-	332	13541952	-	TVN1121	-	DNA primase small subunit
1122	 37.04	-1	1173264..1176557	+	1097	13541953	-	TVN1122	-	serine protease
1123	 38.55	0	1176554..1177588	-	344	13541954	-	TVN1123	-	methionine synthase
1124	 37.41	-1	1177590..1178471	-	293	13541955	-	TVN1124	-	hypothetical protein
1125	 39.27	0	1178481..1179272	-	263	13541956	-	TVN1125	-	5,10-methylenetetrahydrofolate reductase
1126	 34.98	-1	1179340..1179765	+	141	13541957	-	TVN1126	-	hypothetical protein
1127	 35.05	-1	1179749..1180156	-	135	13541958	-	TVN1127	-	transcription regulator
1128	 46.52	+1	1180337..1181974	+	545	13541959	-	TVN1128	-	chaperonin GroEL
1129	 42.37	0	1182043..1183005	+	320	13541960	-	TVN1129	-	thioredoxin reductase
1130	 41.67	0	1183365..1184036	+	223	13541961	-	TVN1130	-	threonine dehydratase
1131	 40.88	0	1184142..1184459	+	105	13541962	-	TVN1131	-	hypothetical protein
1132	 38.52	0	1184913..1185779	+	288	13541963	-	TVN1132	-	protoheme IX farnesyltransferase
1133	 36.69	-1	1185824..1186360	+	178	13541964	-	TVN1133	-	hypothetical protein
1134	 41.73	0	1186695..1187063	+	122	13541965	-	TVN1134	-	50S ribosomal protein L18e
1135	 38.44	0	1187069..1187479	+	136	13541966	rpl13p	TVN1135	-	50S ribosomal protein L13P
1136	 41.85	0	1187481..1187879	+	132	13541967	rps9p	TVN1136	-	30S ribosomal protein S9P
1137	 40.64	0	1187885..1188103	+	72	13541968	-	TVN1137	-	DNA-directed RNA polymerase subunit N
1138	 41.08	0	1189091..1190485	+	464	13541969	-	TVN1138	-	hypothetical protein
1139	 40.95	0	1190495..1191334	-	279	13541970	-	TVN1139	-	pyrroline-5-carboxylate reductase
1140	 39.19	0	1191381..1191875	-	164	13541971	-	TVN1140	-	hypothetical protein
1141	 41.42	0	1192129..1193625	-	498	13541972	-	TVN1141	-	glycerol kinase
1142	 37.34	-1	1193765..1194688	+	307	13541973	-	TVN1142	-	hypothetical protein
1143	 41.72	0	1194876..1196198	+	440	13541974	-	TVN1143	-	sugar-binding protein
1144	 37.31	-1	1196202..1197131	+	309	13541975	-	TVN1144	-	ABC-type sugar transporter, permease component
1145	 40.09	0	1197134..1198021	+	295	13541976	-	TVN1145	-	sugar permease
1146	 41.04	0	1198028..1199143	+	371	13541977	-	TVN1146	-	ABC-type sugar transporter, ATPase component
1147	 40.68	0	1199109..1201040	+	643	13541978	-	TVN1147	-	glycogen debranching protein
1148	 38.74	0	1201046..1202803	+	585	13541979	-	TVN1148	-	glycogen debranching protein
1149	 40.13	0	1202787..1203845	-	352	13541980	-	TVN1149	-	transcription regulator
1150	 43.22	0	1204140..1206092	+	650	13541981	-	TVN1150	-	Acyl-coenzyme A synthetase
1151	 43.79	0	1206089..1206700	+	203	13541982	-	TVN1151	-	hypothetical protein
1152	 41.18	0	1206711..1207577	-	288	13541983	-	TVN1152	-	aldo/keto reductase
1153	 43.21	0	1207583..1208473	-	296	13541984	-	TVN1153	-	hypothetical protein
1154	 38.10	0	1208678..1208887	-	69	13541985	-	TVN1154	-	hypothetical protein
1155	 42.07	0	1209022..1210005	+	327	13541986	-	TVN1155	-	permease
1156	 38.85	0	1210002..1210382	+	126	13541987	-	TVN1156	-	hypothetical protein
1157	 44.95	+1	1210440..1211894	+	484	13541988	-	TVN1157	-	putative oxidoreductase
1158	 45.62	+1	1212110..1213330	+	406	13541989	-	TVN1158	-	cofactor-independent phosphoglycerate mutase
1159	 42.54	0	1213430..1213972	+	180	13541990	-	TVN1159	-	hypothetical protein
1160	 44.10	0	1213986..1215350	-	454	13541991	-	TVN1160	-	proline/betaine transport permease
1161	 41.92	0	1215416..1216615	-	399	13541992	-	TVN1161	-	carnitine dehydratase
1162	 40.28	0	1216673..1217104	-	143	13541993	-	TVN1162	-	transcription regulator (SlyA-related)
1163	 44.90	+1	1217101..1218864	-	587	13541994	-	TVN1163	-	multidrug efflux permease
1164	 34.70	-1	1218962..1219474	+	170	13541995	-	TVN1164	-	hypothetical protein
1165	 39.14	0	1219531..1219926	+	131	13541996	-	TVN1165	-	hypothetical protein
1166	 38.79	0	1219960..1220490	-	176	13541997	-	TVN1166	-	secreted endonuclease distantly related to Holliday junction resolvase
1167	 40.14	0	1220593..1221180	+	195	13541998	-	TVN1167	-	alpha/beta superfamily hydrolase
1168	 44.44	+1	1221182..1222441	-	419	13541999	-	TVN1168	-	hydroxymethylglutaryl-CoA reductase
40.87	MEAN

3.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.