IslandPath Analysis: Thermoplasma volcanium GSS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.87   STD DEV: 3.44
Thermoplasma volcanium GSS1, complete genome - 1..1584804
1499 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
966	 39.51	0	1018247..1019152	+	301	13541797	-	TVN0966	-	phosphate uptake regulator
967	 39.47	0	1019249..1019998	+	249	13541798	-	TVN0967	-	permease
968	 33.74	-2	1020030..1020524	-	164	13541799	-	TVN0968	-	hypothetical protein
969	 39.65	0	1020565..1021134	-	189	13541800	-	TVN0969	-	hypothetical protein
970	 41.19	0	1021365..1022522	-	385	13541801	-	TVN0970	-	hypothetical protein
971	 39.98	0	1022523..1023365	-	280	13541802	-	TVN0971	-	endonuclease IV
972	 43.56	0	1023371..1024084	-	237	13541803	-	TVN0972	-	transcription regulator
973	 42.81	0	1024312..1025493	+	393	13541804	-	TVN0973	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
974	 38.43	0	1025483..1026247	+	254	13541805	-	TVN0974	-	amidohydrolase
975	 39.86	0	1026250..1026954	-	234	13541806	-	TVN0975	-	alpha/beta superfamily hydrolase
976	 44.08	0	1027096..1029756	+	886	13541807	-	TVN0976	-	pyruvate phosphate dikinase
977	 39.81	0	1029778..1030194	-	138	13541808	-	TVN0977	-	DNA-binding protein
978	 40.58	0	1030250..1030594	-	114	13541809	-	TVN0978	-	ferredoxin
979	 42.30	0	1030681..1031550	+	289	13541810	-	TVN0979	-	ribokinase family sugar kinase
980	 43.10	0	1031698..1032219	+	173	13541811	-	TVN0980	-	acetyltransferase
981	 43.28	0	1032254..1033459	+	401	13541812	eno	TVN0981	-	phosphopyruvate hydratase
982	 43.32	0	1033444..1034064	+	206	13541813	-	TVN0982	-	diphthine synthase
983	 40.26	0	1034191..1034796	-	201	13541814	-	TVN0983	-	transcription regulator
984	 42.62	0	1034799..1035347	-	182	13541815	-	TVN0984	-	molecular chaperone (small heat shock protein, hsp20-related)
985	 39.67	0	1035393..1038440	-	1015	13541816	-	TVN0985	-	transporter
986	 42.66	0	1038522..1039754	+	410	13541817	-	TVN0986	-	S-adenosyl-L-homocysteine hydrolase
987	 41.78	0	1039759..1041084	-	441	13541818	-	TVN0987	-	seryl-tRNA synthetase
988	 39.26	0	1041141..1042187	-	348	13541819	-	TVN0988	-	Kef-type K+ transporter NAD-binding component
989	 40.36	0	1042450..1043445	-	331	13541820	-	TVN0989	-	tyrosyl-tRNA synthetase
990	 36.78	-1	1043574..1043834	+	86	13541821	-	TVN0990	-	lipoate-protein ligase A
991	 43.47	0	1043836..1044624	+	262	13541822	-	TVN0991	-	lipoate-protein ligase A
992	 43.20	0	1044736..1046103	+	455	13541823	-	TVN0992	-	signal recognition particle protein Srp54
993	 46.35	+1	1046096..1047286	-	396	13541824	-	TVN0993	-	geranylgeranyl reductase
994	 44.60	+1	1047273..1047485	-	70	13541825	-	TVN0994	-	ferredoxin subunit of tungsten formylmethanofuran dehydrogenase
995	 37.25	-1	1047701..1048567	-	288	13541826	-	TVN0995	-	coiled-coil protein
996	 44.88	+1	1048762..1050051	+	429	13541827	asnC	TVN0996	-	asparaginyl-tRNA synthetase
997	 41.13	0	1050098..1050802	-	234	13541828	-	TVN0997	-	hypothetical protein
998	 47.58	+1	1050816..1051826	-	336	13541829	-	TVN0998	-	pyridoxine biosynthesis protein
999	 42.84	0	1051950..1053296	+	448	13541830	-	TVN0999	-	adenylosuccinate lyase
1000	 42.64	0	1053297..1053887	+	196	13541831	-	TVN1000	-	hypothetical protein
1001	 42.72	0	1053893..1054510	-	205	13541832	-	TVN1001	-	ATPase
1002	 41.92	0	1054535..1055338	-	267	13541833	-	TVN1002	-	thiamine monophosphate kinase
1003	 42.51	0	1055578..1057059	-	493	13541834	-	TVN1003	-	single-stranded DNA-specific exonuclease
1004	 38.94	0	1057056..1058108	-	350	13541835	-	TVN1004	-	Fe-S oxidoreductase
1005	 41.80	0	1058196..1059341	+	381	13541836	-	TVN1005	-	aspartate aminotransferase
1006	 44.84	+1	1059400..1060320	+	306	13541837	-	TVN1006	-	homoserine kinase
1007	 39.77	0	1060298..1061416	+	372	13541838	-	TVN1007	-	cystathionine beta-lyase or cystathionine gamma-synthase
1008	 38.38	0	1061681..1062076	-	131	13541839	-	TVN1008	-	hypothetical protein
1009	 40.12	0	1062110..1063258	-	382	13541840	-	TVN1009	-	translation-associated GTPase
1010	 43.50	0	1063293..1064915	-	540	13541841	-	TVN1010	-	Fe-S oxidoreductase
1011	 41.61	0	1065076..1065993	-	305	13541842	-	TVN1011	-	heat shock protein HtpX
1012	 38.42	0	1066198..1067415	+	405	13541843	-	TVN1012	-	ATPase
1013	 40.64	0	1067417..1068265	+	282	13541844	-	TVN1013	-	hypothetical protein
1014	 42.28	0	1068262..1068999	+	245	13541845	-	TVN1014	-	hypothetical protein
1015	 41.61	0	1068996..1070228	+	410	13541846	-	TVN1015	-	ATPase
1016	 38.57	0	1070221..1071519	-	432	13541847	-	TVN1016	-	NhaP-type Na+/H+ antiporter
1017	 41.43	0	1071522..1072250	-	242	13541848	nadE	TVN1017	-	NAD synthetase
1018	 41.73	0	1072456..1073301	-	281	13541849	-	TVN1018	-	5,10-methylene-tetrahydrofolate dehydrogenase
1019	 41.62	0	1073292..1074377	-	361	13541850	-	TVN1019	-	glucose 1-dehydrogenase
1020	 41.94	0	1074483..1076108	+	541	13541851	-	TVN1020	-	pyruvate kinase
1021	 45.68	+1	1076124..1077605	-	493	13541852	-	TVN1021	-	NAD-dependent aldehyde dehydrogenase
1022	 38.94	0	1077942..1078655	-	237	13541853	trpC	TVN1022	-	indole-3-glycerol-phosphate synthase
1023	 42.57	0	1078652..1079203	-	183	13541854	-	TVN1023	-	anthranilate synthase component II
1024	 42.05	0	1079200..1080255	-	351	13541855	-	TVN1024	-	anthranilate synthase component I
1025	 41.67	0	1080245..1080832	-	195	13541856	-	TVN1025	-	N-(5'-phosphoribosyl)anthranilate isomerase
1026	 42.02	0	1080804..1081793	-	329	13541857	trpD	TVN1026	-	anthranilate phosphoribosyltransferase
1027	 42.02	0	1081798..1082511	-	237	13541858	-	TVN1027	-	tryptophan synthase subunit alpha
1028	 40.25	0	1082508..1083317	-	269	13541859	-	TVN1028	-	hypothetical protein
1029	 37.50	0	1083343..1083726	-	127	13541860	-	TVN1029	-	hypothetical protein
1030	 40.18	0	1083723..1084394	-	223	13541861	-	TVN1030	-	methylase involved in ubiquinone/menaquinone biosynthesis
1031	 41.25	0	1084391..1084693	-	100	13541862	-	TVN1031	-	hypothetical protein
1032	 42.90	0	1084690..1086789	-	699	13541863	-	TVN1032	-	ATPase involved in replication control
1033	 39.70	0	1086877..1087473	-	198	13541864	-	TVN1033	-	aspartokinase beta subunit
1034	 42.61	0	1087952..1088770	+	272	13541865	ppnK	TVN1034	-	inorganic polyphosphate/ATP-NAD kinase
1035	 40.92	0	1088757..1089125	+	122	13541866	-	TVN1035	-	hypothetical protein
1036	 46.16	+1	1089346..1091037	-	563	13541867	-	TVN1036	-	amino acid transporter
1037	 41.27	0	1091235..1092683	+	482	13541868	pheS	TVN1037	-	phenylalanyl-tRNA synthetase subunit alpha
1038	 34.16	-1	1092836..1093558	+	240	13541869	-	TVN1038	-	hypothetical protein
1039	 41.69	0	1093610..1094530	+	306	13541870	-	TVN1039	-	ABC-type daunorubicin transport system, ATPase component
1040	 40.32	0	1094511..1095254	+	247	13541871	-	TVN1040	-	ABC-type multidrug transport system, permease component
1041	 37.23	-1	1095337..1095567	-	76	13541872	-	TVN1041	-	transposon-encoded protein
1042	 43.73	0	1095610..1096917	-	435	13541873	-	TVN1042	-	ammonia permease
1043	 43.00	0	1098308..1099635	+	441	13541874	-	TVN1043	-	major facilitator superfamily permease
1044	 41.71	0	1099680..1100789	+	369	13541875	-	TVN1044	-	AAA family ATPase
1045	 42.04	0	1100740..1102599	-	619	13541876	-	TVN1045	-	DNA polymerase I
1046	 44.07	0	1102602..1102778	-	58	13541877	-	TVN1046	-	hypothetical protein
1047	 37.92	0	1102801..1103214	-	137	13541878	-	TVN1047	-	hypothetical protein
1048	 40.86	0	1103735..1104505	+	256	13541879	-	TVN1048	-	ABC-type Fe3+-siderophores transporter, solute-binding component
1049	 45.16	+1	1104527..1106725	-	732	13541880	-	TVN1049	-	elongation factor EF-2
1050	 45.40	+1	1106762..1107076	-	104	13541881	rps10p	TVN1050	-	30S ribosomal protein S10P
1051	 46.59	+1	1107082..1108356	-	424	13541882	-	TVN1051	-	elongation factor 1-alpha
1052	 40.98	0	1108542..1109522	+	326	13541883	moaA	TVN1052	-	molybdenum cofactor biosynthesis protein A
1053	 40.54	0	1109669..1110889	+	406	13541884	-	TVN1053	-	major facilitator superfamily permease
1054	 45.83	+1	1110903..1112447	-	514	13541885	-	TVN1054	-	NAD-dependent aldehyde dehydrogenase
1055	 33.90	-2	1112501..1112677	-	58	13541886	-	TVN1055	-	hypothetical protein
1056	 41.84	0	1112685..1113848	-	387	13541887	-	TVN1056	-	arsenite transporting ATPase
1057	 41.28	0	1113858..1114838	-	326	13541888	-	TVN1057	-	octaprenyl diphosphate synthase
1058	 40.74	0	1115434..1115703	-	89	13541889	-	TVN1058	-	chromatin protein
1059	 38.18	0	1116040..1116741	+	233	13541890	-	TVN1059	-	3-oxoacyl-[acyl-carrier-protein] reductase
1060	 42.86	0	1116776..1117951	-	391	13541891	-	TVN1060	-	major facilitator superfamily permease
1061	 37.63	0	1118431..1118709	+	92	13541892	-	TVN1061	-	hypothetical protein
1062	 41.03	0	1118724..1119464	-	246	13541893	-	TVN1062	-	DNA polymerase sliding clamp
1063	 40.95	0	1119628..1120467	-	279	13541894	-	TVN1063	-	hypothetical protein
1064	 38.86	0	1120468..1121769	-	433	13541895	-	TVN1064	-	hypothetical protein
1065	 41.98	0	1121766..1122725	-	319	13541896	-	TVN1065	-	MoxR-like ATPase
40.87	MEAN

3.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.